genome.fa.s19.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  18  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5015856--5015896	4	10.2	4	100	0	82	24	0	24	51	1.49
5017896--5017943	20	2.3	21	85	3	62	66	4	6	22	1.32
5019845--5019887	22	1.9	23	85	4	61	55	6	2	34	1.39
5021742--5021771	13	2.3	13	100	0	60	40	43	0	16	1.48
5021914--5021979	9	7.2	9	83	10	80	19	10	27	42	1.84
5027201--5027374	73	2.4	73	82	0	195	23	20	25	31	1.98
5027429--5027683	114	2.2	115	90	1	415	27	22	21	28	1.99
5027429--5027840	114	3.6	112	82	3	396	26	20	23	28	1.99
5028182--5028243	21	3.0	21	70	0	52	25	1	24	48	1.60
5028499--5028552	28	1.9	28	82	14	67	20	0	31	48	1.50
5029014--5029224	114	1.8	115	89	1	334	27	16	20	36	1.93
5033372--5033439	21	3.2	21	76	0	64	38	17	36	7	1.78
5033859--5034053	42	4.7	42	86	1	241	26	20	20	32	1.97
5033859--5034067	84	2.5	84	86	4	287	26	21	20	32	1.98
5034141--5034185	21	2.1	21	87	0	63	44	28	15	11	1.81
5043012--5043080	25	2.7	25	77	6	68	30	11	14	43	1.81
5044610--5044642	16	2.1	16	88	11	50	63	0	3	33	1.10
5053083--5053132	23	2.2	22	86	10	66	56	6	4	34	1.43
5053100--5053189	22	3.9	24	81	10	98	56	3	5	34	1.39
5054661--5055786	143	7.9	143	86	0	1491	28	21	19	30	1.97
5056954--5060265	829	4.0	830	93	1	5279	25	21	16	37	1.93
5060577--5060637	22	2.7	22	82	2	68	8	24	0	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5067049--5067079	9	3.4	9	90	0	53	25	12	22	38	1.90
5067133--5067169	9	4.1	9	92	0	65	45	13	10	29	1.77
5068172--5068197	5	5.2	5	100	0	52	19	19	19	42	1.90
5070432--5070521	45	2.0	45	88	0	135	25	18	20	35	1.95
5070579--5070651	37	1.9	37	84	13	96	43	2	21	31	1.67
5076649--5076724	23	3.3	23	92	0	134	30	26	21	22	1.99
5081937--5082409	45	10.6	43	72	12	266	29	20	18	31	1.96
5082077--5082409	44	7.5	45	71	13	135	30	21	18	30	1.97
5082167--5082271	41	2.6	40	82	5	131	34	19	18	28	1.95
5082157--5082271	40	2.8	40	80	5	142	33	19	17	29	1.94
5082971--5083061	45	2.0	46	82	6	114	52	8	12	26	1.67
5084314--5084347	17	2.0	17	94	0	59	52	2	5	38	1.41
5084360--5084415	25	2.2	25	83	0	67	58	5	3	32	1.37
5084433--5084471	3	13.0	3	84	10	53	64	0	2	33	1.08
5084437--5084475	12	3.2	12	86	13	62	61	0	5	33	1.18
5084434--5084471	13	2.8	14	80	19	53	63	0	2	34	1.09
5088768--5088817	24	2.1	24	85	7	66	46	12	22	20	1.83
5089844--5089895	22	2.4	22	83	0	68	46	21	15	17	1.84
5089887--5090088	32	6.4	32	79	3	185	40	19	17	22	1.91
5090248--5090338	11	7.7	11	72	13	65	48	29	6	15	1.70
5090238--5090367	24	5.4	24	89	0	179	46	26	7	19	1.77
5090533--5090593	27	2.3	27	88	0	86	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5094849--5094917	25	2.7	25	81	2	75	31	13	13	42	1.82
5096699--5096748	23	2.2	22	85	3	64	54	6	6	34	1.50
5096727--5096805	22	3.5	22	77	11	72	55	3	6	34	1.43
5098270--5098672	143	2.8	143	81	2	495	30	20	18	31	1.96
5101058--5101095	18	2.2	18	86	9	53	13	5	0	81	0.85
5104361--5104413	18	2.9	18	74	0	61	37	15	0	47	1.45
5110599--5110655	18	3.1	18	77	7	53	66	0	1	31	1.02
5110602--5110655	27	2.0	27	88	0	81	66	0	1	31	1.02
5117771--5117796	13	2.0	13	100	0	52	53	0	23	23	1.46
5120161--5120213	24	2.2	25	86	3	72	45	7	20	26	1.78
5121055--5121137	30	2.7	30	86	1	112	28	22	24	24	1.99
5131388--5131449	22	2.8	21	75	4	61	45	17	17	19	1.86
5131441--5131643	32	6.4	32	78	2	203	39	20	19	20	1.92
5131791--5131832	13	3.4	13	77	12	52	47	26	7	19	1.74
5131801--5131843	11	3.7	11	76	11	50	51	27	6	13	1.67
5131791--5131872	24	3.4	24	84	0	110	47	24	7	20	1.75
5131803--5131900	24	4.1	24	80	2	108	47	23	6	22	1.73
5131803--5131900	48	2.0	48	84	11	130	47	23	6	22	1.73
5132001--5132063	27	2.3	27	86	0	81	25	22	15	36	1.94
5136453--5136524	25	2.9	25	81	8	76	33	9	11	45	1.72
5137733--5137782	23	2.2	22	86	10	66	56	6	4	34	1.43
5137738--5137839	22	4.5	22	78	13	75	55	2	6	34	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5140709--5140745	3	12.3	3	100	0	74	67	32	0	0	0.91
5142541--5142932	100	3.9	100	88	1	529	28	22	19	29	1.98
5142574--5142941	50	7.4	50	73	0	315	28	23	18	29	1.98
5142538--5142950	199	2.1	200	84	2	526	29	22	18	29	1.98
5143134--5143529	45	8.8	45	77	3	359	31	22	15	29	1.95
5145679--5145718	16	2.5	16	88	8	55	10	5	7	77	1.11
5149842--5149944	4	25.8	4	100	0	206	25	0	24	50	1.49
5151635--5151830	98	2.0	98	86	4	270	29	21	17	31	1.97
5151515--5151966	241	1.9	241	87	2	676	27	22	18	31	1.97
5151727--5152518	143	5.5	143	84	1	1005	28	20	19	30	1.97
5151730--5152518	285	2.8	285	84	1	1051	29	20	19	30	1.97
5154593--5154677	45	1.9	43	85	4	116	17	21	17	43	1.88
5155643--5155684	12	3.8	11	81	12	59	0	26	0	73	0.83
5155645--5155685	22	1.9	21	95	5	73	0	26	0	73	0.84
5155647--5155702	22	2.6	21	80	8	58	5	28	0	66	1.14
5160398--5160602	102	2.0	102	90	0	320	33	19	17	30	1.94
5162527--5162796	112	2.4	114	83	3	348	31	15	18	34	1.93
5162604--5162832	112	2.1	113	82	8	283	29	18	20	31	1.96
5162945--5163111	92	1.8	89	87	7	246	40	14	11	32	1.82
5169439--5169542	41	2.5	41	90	3	165	25	21	30	22	1.98
5174416--5174567	27	5.9	27	68	26	105	19	21	28	30	1.97
5174418--5174774	33	10.4	33	72	21	204	20	19	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5174416--5174599	102	1.8	102	95	2	334	18	20	28	32	1.96
5174613--5174749	42	3.5	41	77	17	173	22	18	27	32	1.97
5174580--5174786	75	2.8	75	93	0	351	21	19	27	31	1.97
5182006--5182193	27	5.8	33	72	23	132	18	21	28	32	1.96
5182001--5182191	102	1.9	102	95	0	346	18	20	29	31	1.96
5188732--5189023	43	6.8	44	86	3	407	23	32	17	26	1.97
5190303--5190444	27	5.3	27	77	0	106	34	18	21	25	1.96
5190384--5190484	27	3.8	27	76	7	100	35	22	18	22	1.96
5191065--5191290	30	7.6	30	91	1	350	21	26	20	31	1.98
5192098--5192150	24	2.2	25	86	3	72	26	18	7	47	1.75
5195258--5195307	9	5.6	9	76	9	57	84	2	12	2	0.80
5195261--5195308	20	2.6	20	84	12	59	81	2	12	4	0.93
5196224--5196356	45	3.0	45	81	4	162	32	18	21	28	1.96
5196373--5196475	41	2.5	40	80	7	109	31	17	17	33	1.93
5196445--5196615	90	1.9	88	80	7	200	32	19	19	28	1.96
5198664--5198706	21	2.0	21	81	0	50	9	9	11	69	1.36
5205209--5205272	19	3.2	20	76	14	62	73	0	18	7	1.07
5207916--5207957	22	1.9	22	100	0	84	40	4	26	28	1.76
5208308--5209431	143	7.9	143	86	0	1451	31	19	20	28	1.97
5210665--5210715	22	2.2	23	86	6	68	37	5	0	56	1.23
5210665--5210754	23	4.0	23	80	10	78	33	5	2	58	1.33
5210683--5210771	22	4.1	22	73	21	73	32	3	3	60	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210706--5210771	23	3.1	19	76	23	60	31	3	4	60	1.32
5212627--5212695	25	2.7	26	86	10	90	44	14	11	28	1.80
5221263--5221294	14	2.3	14	100	0	64	56	31	6	6	1.49
5235403--5235463	23	2.6	23	81	2	59	34	14	24	26	1.94
5239030--5239061	13	2.5	13	100	0	64	56	6	0	37	1.25
5239317--5239590	24	11.7	24	69	12	151	55	5	5	33	1.46
5239416--5239605	45	4.1	47	77	8	169	57	3	5	33	1.38
5239339--5239551	114	1.9	114	80	7	254	53	4	6	35	1.46
5239339--5239608	69	3.9	68	75	9	197	55	4	5	34	1.44
5241620--5241656	18	2.1	18	100	0	74	27	5	27	40	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230