genome.fa.s19.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  209  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62209427--62210677	132	9.5	132	92	0	2052	28	18	24	28	1.98
62212764--62212802	14	2.8	14	84	0	51	33	2	7	56	1.41
62215576--62215749	35	4.9	35	68	11	111	28	23	24	23	2.00
62217240--62217285	21	2.2	21	84	7	58	73	0	19	6	1.04
62223074--62223147	29	2.4	32	76	10	75	25	5	8	60	1.46
62226682--62226717	18	2.1	17	89	5	54	41	2	13	41	1.59
62228021--62228068	22	2.2	22	84	0	60	62	8	6	22	1.46
62228029--62228076	22	2.2	22	81	7	53	62	6	10	20	1.49
62237274--62237317	23	1.9	23	95	0	79	22	11	20	45	1.83
62238419--62238475	27	2.1	27	100	0	114	64	12	10	12	1.49
62239133--62239192	3	20.0	3	100	0	120	33	0	0	66	0.92
62243289--62243376	21	4.4	20	67	16	67	75	2	12	10	1.15
62243293--62243377	20	4.4	19	66	19	59	74	2	14	9	1.17
62243307--62243356	25	2.0	26	84	4	66	76	4	6	14	1.13
62243283--62243400	58	2.1	58	93	1	202	72	4	12	10	1.24
62244338--62244418	7	11.7	7	94	2	146	71	1	13	13	1.21
62245724--62246913	44	27.7	44	76	8	730	31	21	23	23	1.98
62245855--62246535	219	3.1	219	93	0	1150	30	20	24	24	1.99
62245939--62246917	175	5.7	175	76	10	591	31	21	23	23	1.98
62245901--62246936	126	8.1	126	76	9	515	31	21	23	23	1.98
62246470--62246915	209	2.1	209	94	0	786	32	21	21	23	1.98
62246676--62246936	83	3.1	83	97	0	486	31	23	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62246884--62247039	41	3.7	41	69	9	118	30	21	20	28	1.98
62248423--62248487	3	22.0	3	96	3	123	33	0	0	66	0.92
62251352--62251434	3	28.0	3	74	16	75	28	6	2	62	1.31
62257510--62257553	18	2.4	19	81	7	56	61	0	2	36	1.09
62262421--62262487	21	3.4	20	75	19	61	71	1	22	4	1.12
62264717--62264811	50	1.9	50	91	4	156	32	20	29	17	1.96
62264717--62264885	25	6.9	24	75	9	128	36	18	26	18	1.95
62266161--62266217	29	2.0	29	96	0	105	56	7	5	31	1.49
62267701--62268238	244	2.2	244	81	5	635	41	14	13	30	1.85
62272012--62272046	16	2.2	16	95	5	63	28	0	0	71	0.86
62273188--62273253	27	2.5	26	72	2	60	18	28	4	48	1.67
62274779--62274828	16	3.4	16	71	21	54	48	16	14	22	1.81
62274778--62274841	28	2.3	28	88	0	101	48	15	12	23	1.79
62275444--62275587	63	2.3	63	86	3	200	28	27	20	24	1.99
62278513--62278559	20	2.4	19	76	13	51	59	0	10	29	1.31
62281061--62281105	22	2.0	22	82	0	54	35	20	8	35	1.84
62282486--62282528	14	3.2	13	80	9	50	76	4	4	13	1.10
62293428--62293501	11	7.3	11	73	23	65	39	2	0	58	1.13
62293412--62293490	37	2.1	38	97	2	151	37	2	0	59	1.11
62301618--62301711	26	3.6	26	81	11	95	26	24	15	32	1.96
62305693--62305743	20	2.5	20	75	18	50	50	1	1	45	1.24
62316332--62316366	3	11.7	3	88	11	54	68	0	2	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62327292--62327321	14	2.1	14	100	0	60	33	46	13	6	1.69
62332416--62332445	14	2.1	14	100	0	60	33	46	13	6	1.69
62336266--62336307	22	2.0	21	86	9	59	42	16	0	40	1.48
62336933--62336958	6	4.3	6	100	0	52	53	0	0	46	1.00
62343693--62343744	16	3.2	16	94	0	86	28	0	36	34	1.58
62343725--62343819	45	2.1	44	86	1	127	35	5	26	32	1.79
62343981--62344015	18	2.0	17	88	5	52	54	0	0	45	0.99
62343900--62344174	147	1.9	149	94	1	491	46	2	3	47	1.33
62344148--62344326	55	3.1	54	64	22	128	49	7	2	41	1.43
62344248--62344282	18	2.0	17	88	5	52	60	0	0	40	0.97
62344358--62344389	16	1.9	17	93	6	57	46	0	0	53	1.00
62344111--62344403	120	2.4	120	91	2	473	50	5	2	42	1.37
62344447--62344503	27	2.2	26	81	9	62	54	3	0	42	1.17
62348574--62348601	12	2.3	12	100	0	56	35	25	25	14	1.93
62350678--62350728	24	2.1	24	96	0	93	33	5	23	37	1.79
62352055--62352099	23	1.9	24	82	13	58	8	44	2	44	1.47
62352301--62352349	23	2.0	24	84	11	64	6	8	10	75	1.18
62359678--62359712	17	2.1	17	89	5	54	57	5	2	34	1.37
62362957--62363019	20	3.1	20	64	28	51	39	11	4	44	1.61
62363721--62363766	15	3.1	15	76	17	51	23	10	19	45	1.82
62365173--62365199	11	2.5	11	100	0	54	22	7	18	51	1.70
62366626--62366770	47	3.2	46	68	16	120	44	2	4	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62366607--62366814	91	2.3	91	88	2	301	45	3	3	46	1.39
62366830--62367242	120	3.4	120	96	1	740	42	2	4	49	1.38
62366955--62367006	15	3.6	15	80	12	56	44	0	1	53	1.11
62366988--62367185	66	3.2	66	68	21	199	42	3	6	47	1.43
62367075--62367126	15	3.6	15	80	12	56	44	0	1	53	1.11
62366891--62367197	61	5.1	61	67	17	237	42	2	6	48	1.42
62367204--62367245	15	2.7	16	82	14	52	45	0	2	52	1.13
62367195--62367236	15	2.9	15	82	10	52	47	0	0	52	1.00
62367179--62367488	157	2.0	157	96	0	575	47	4	2	44	1.39
62367348--62367382	18	2.0	17	88	5	52	45	0	0	54	0.99
62367616--62367653	16	2.4	16	90	0	58	34	34	0	31	1.58
62370855--62370910	18	3.1	18	74	20	53	19	5	5	69	1.28
62371006--62371039	15	2.3	15	89	0	50	17	14	8	58	1.61
62372828--62372854	12	2.2	12	100	0	54	14	7	29	48	1.71
62374720--62374753	16	2.1	16	88	0	50	50	14	17	17	1.79
62379498--62379531	16	2.1	16	88	0	50	50	14	17	17	1.79
62380451--62380542	46	2.1	43	88	11	136	32	14	22	30	1.93
62383518--62383735	108	2.0	108	100	0	436	27	15	11	46	1.79
62395517--62395625	34	3.3	33	80	14	134	54	1	0	43	1.17
62395541--62395594	17	3.3	17	70	17	51	55	1	0	42	1.10
62395544--62395600	15	3.7	15	71	17	53	54	3	0	42	1.17
62395628--62395697	21	3.1	22	74	14	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62399626--62399696	30	2.4	30	90	0	115	25	16	21	36	1.94
62405940--62405981	21	2.0	21	100	0	84	38	9	23	28	1.86
62410718--62410843	6	21.0	6	100	0	252	50	16	0	33	1.46
62414691--62414732	6	7.2	6	91	2	68	64	0	35	0	0.94
62421159--62421203	3	15.0	3	100	0	90	33	0	0	66	0.92
62433655--62433683	5	6.0	5	92	8	51	41	0	0	58	0.98
62434428--62434474	24	2.0	24	84	16	62	31	0	17	51	1.46
62436277--62436349	29	2.6	29	86	2	94	31	24	17	26	1.97
62440023--62440067	15	2.9	16	78	15	51	22	20	0	57	1.40
62440009--62440094	43	2.0	43	90	0	136	22	20	2	54	1.56
62442957--62443018	25	2.4	26	74	15	67	74	0	22	3	0.96
62452069--62452106	17	2.2	18	86	9	53	42	0	0	57	0.98
62452068--62452106	18	2.2	18	86	4	53	41	0	0	58	0.98
62452088--62452148	20	2.9	21	78	14	72	45	0	4	49	1.23
62452088--62452152	19	3.2	20	80	12	71	43	0	4	52	1.22
62455330--62455374	24	1.9	23	90	4	72	37	2	13	46	1.55
62458552--62458583	11	2.9	11	95	0	55	59	0	0	40	0.97
62462016--62462083	33	2.1	33	88	0	100	20	20	22	36	1.95
62469877--62469938	29	2.2	29	85	2	81	25	9	14	50	1.73
62470156--62470434	123	2.3	124	94	1	490	29	15	21	34	1.94
62472456--62472626	29	6.0	29	90	2	265	30	1	23	44	1.61
62474788--62474843	25	2.3	25	80	14	64	62	5	0	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62474934--62475004	31	2.4	31	90	4	110	64	0	0	35	0.94
62474934--62474984	20	2.5	20	74	3	57	66	0	0	33	0.92
62475034--62475084	22	2.3	21	83	9	66	35	0	33	31	1.58
62475056--62475114	30	2.0	30	93	0	100	37	0	32	30	1.58
62475033--62475135	52	2.0	52	92	0	170	36	0	32	31	1.58
62475086--62475135	22	2.3	22	92	0	82	40	0	32	28	1.57
62476320--62476364	19	2.4	18	82	10	54	35	2	0	62	1.08
62476305--62476374	26	2.6	26	79	6	77	30	1	0	68	0.98
62476295--62476377	19	4.5	19	67	15	50	30	1	1	67	1.06
62495246--62495307	9	6.9	9	88	0	88	33	25	11	29	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230