genome.fa.s19.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  195  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58721128--58721718	50	11.8	50	67	3	285	25	24	21	28	1.99
58721102--58721708	100	6.1	100	88	0	806	25	24	20	29	1.99
58722829--58722892	31	2.1	31	100	0	128	34	12	6	46	1.67
58723385--58723438	15	3.8	14	80	17	58	7	12	3	75	1.14
58728320--58728382	18	3.4	18	75	14	58	61	1	4	31	1.26
58728360--58728393	14	2.3	15	90	5	52	58	5	8	26	1.51
58736868--58736892	12	2.1	12	100	0	50	24	32	8	36	1.84
58737488--58738321	132	6.4	131	86	4	1053	29	18	25	26	1.98
58738339--58738461	51	2.4	51	83	2	140	30	21	20	27	1.98
58739158--58739190	5	6.6	5	89	10	50	18	0	0	81	0.68
58739164--58739190	14	1.9	14	100	0	54	18	0	0	81	0.69
58739894--58739960	16	4.1	16	72	22	59	23	7	0	68	1.15
58740156--58740244	3	30.0	3	73	6	56	32	7	1	58	1.34
58740179--58740234	15	3.7	15	82	0	67	37	5	1	55	1.33
58742904--58744035	59	19.2	59	90	0	1674	45	4	3	46	1.41
58743742--58743779	19	2.0	20	89	5	60	36	0	5	57	1.21
58742928--58744011	32	36.8	29	63	21	246	45	4	3	46	1.40
58750211--58750292	43	1.9	43	92	0	137	28	15	28	28	1.96
58753254--58753311	22	2.6	22	81	7	64	41	17	5	36	1.72
58753636--58756787	132	23.9	132	93	0	5198	29	23	18	28	1.97
58760720--58760765	24	1.9	24	86	0	65	10	26	17	45	1.81
58763623--58763737	19	5.7	21	81	8	71	40	13	6	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58763623--58763680	22	2.6	22	81	7	64	41	17	5	36	1.72
58763659--58763750	19	4.8	19	91	0	139	38	13	9	39	1.77
58763636--58763750	38	2.9	38	81	5	131	39	13	8	38	1.76
58764838--58764890	19	2.8	20	78	21	60	35	1	5	56	1.34
58764958--58765150	106	1.9	103	86	7	275	44	7	8	40	1.62
58772984--58773022	20	2.0	20	89	0	60	35	2	2	58	1.25
58773291--58773332	21	2.0	21	100	0	84	42	14	9	33	1.78
58791013--58791144	68	2.0	67	92	4	221	21	6	21	50	1.70
58798216--58798271	23	2.3	25	75	9	62	37	0	3	58	1.15
58798741--58798768	6	4.7	6	100	0	56	14	0	50	35	1.43
58798892--58799121	96	2.4	96	83	4	286	39	4	18	38	1.70
58799131--58799183	16	3.4	16	71	23	58	37	1	5	54	1.35
58799126--58799188	31	2.0	31	100	0	126	38	3	7	50	1.47
58799185--58799601	126	3.3	126	94	0	726	31	18	22	27	1.97
58803278--58803320	18	2.4	18	80	0	50	41	9	27	20	1.83
58804937--58805002	22	3.0	22	77	0	69	40	21	22	15	1.90
58805387--58805416	15	2.0	15	93	0	51	63	0	0	36	0.95
58806065--58806090	11	2.4	11	100	0	52	0	42	7	50	1.31
58811640--58811724	25	3.4	25	88	3	118	37	21	22	18	1.94
58812012--58812044	5	6.6	5	92	0	57	18	3	0	78	0.87
58815290--58815395	41	2.6	41	89	0	158	23	19	24	32	1.98
58822039--58822326	126	2.3	126	92	0	477	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58825625--58825681	21	2.7	21	81	5	62	7	19	43	29	1.77
58827787--58827829	10	4.0	10	82	14	50	44	0	32	23	1.54
58850202--58850282	31	2.7	30	81	9	85	41	7	6	44	1.57
58855055--58855092	19	2.0	19	89	0	58	21	15	10	52	1.72
58857757--58857823	34	1.9	35	90	3	109	44	13	8	32	1.75
58863104--58863144	21	1.9	22	85	5	57	26	2	7	63	1.33
58863593--58863656	13	4.9	13	76	14	60	34	7	21	35	1.83
58863595--58863656	26	2.4	26	76	10	72	35	8	20	35	1.83
58865921--58865972	27	1.9	27	88	0	77	61	5	23	9	1.48
58867204--58867250	24	2.0	24	83	8	60	48	0	34	17	1.47
58871130--58871181	19	2.7	19	77	11	52	67	3	0	28	1.08
58871202--58871242	9	4.6	9	81	0	55	68	2	0	29	1.03
58871268--58871314	22	2.3	19	82	13	58	55	6	2	36	1.37
58871270--58871320	20	2.4	22	87	9	70	54	7	1	35	1.40
58871868--58871908	21	2.0	20	85	4	55	26	0	7	65	1.18
58872653--58872690	2	19.0	2	94	0	67	47	50	2	0	1.15
58872653--58872698	8	5.8	8	94	0	56	45	47	6	0	1.28
58883364--58883389	13	2.0	13	100	0	52	30	23	15	30	1.95
58887840--58887865	13	2.0	13	100	0	52	30	23	15	30	1.95
58892723--58892768	16	2.9	16	79	20	53	52	2	2	43	1.25
58893454--58893478	9	2.8	9	100	0	50	88	0	0	12	0.53
58912617--58912645	2	14.5	2	100	0	58	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58914555--58914611	6	9.5	6	100	0	114	0	49	0	50	1.00
58917323--58917358	17	2.1	17	90	10	56	55	2	0	41	1.14
58917583--58917633	24	2.1	24	100	0	102	25	15	7	50	1.71
58919393--58919435	9	4.4	9	88	5	50	55	0	0	44	0.99
58919398--58919435	19	2.1	18	95	5	67	52	0	0	47	1.00
58919392--58919436	10	4.5	11	81	18	62	57	0	0	42	0.98
58919378--58919436	30	2.0	30	86	3	84	57	0	0	42	0.98
58920313--58920420	55	2.0	55	88	0	162	34	17	21	26	1.96
58924789--58924822	16	2.1	16	88	0	50	26	2	0	70	1.01
58930604--58930644	21	1.9	23	85	14	61	26	19	19	34	1.96
58934358--58934411	27	2.0	28	85	3	74	18	5	14	61	1.52
58936326--58936415	45	2.0	45	97	0	171	35	11	10	43	1.74
58936571--58936600	14	2.1	14	93	0	51	46	10	13	30	1.75
58937804--58937844	21	2.0	21	85	0	55	7	36	17	39	1.77
58941274--58941308	17	2.1	17	94	0	61	40	14	11	34	1.82
58942564--58942621	18	3.2	18	75	18	66	46	0	13	39	1.44
58943265--58943341	29	2.6	29	85	2	100	32	40	5	22	1.76
58943268--58943344	30	2.6	30	85	4	93	35	37	5	22	1.76
58943495--58943561	7	9.6	7	80	0	62	50	28	0	20	1.48
58943488--58943555	21	3.2	21	79	6	75	48	27	0	23	1.51
58943481--58943561	28	2.9	28	85	3	92	50	24	0	24	1.49
58943495--58943561	21	3.2	21	87	4	91	50	28	0	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58943630--58943703	21	3.5	21	71	10	62	54	24	1	20	1.53
58946024--58946239	91	2.4	90	82	6	258	25	12	24	37	1.91
58949355--58949401	21	2.2	22	92	3	78	21	38	19	21	1.94
58955500--58955541	18	2.5	17	80	7	50	52	7	0	40	1.29
58955971--58956037	16	3.9	18	73	15	61	70	7	1	20	1.20
58957440--58957492	25	2.1	25	82	6	63	52	1	22	22	1.56
58967215--58967253	20	1.9	21	84	5	53	23	23	15	38	1.92
58989005--58989033	12	2.5	12	94	5	51	79	3	0	17	0.87
59002243--59002278	18	2.0	18	100	0	72	44	16	11	27	1.82
59002891--59002919	8	3.6	8	100	0	58	27	0	10	62	1.28
59003541--59003575	18	1.9	18	88	0	52	51	0	5	42	1.25
59004519--59004579	27	2.3	27	91	0	95	47	9	0	42	1.36
59004611--59004662	27	1.9	27	92	0	86	30	23	30	15	1.95
59005233--59005328	19	5.2	19	78	5	115	37	13	0	48	1.43
59005237--59005328	37	2.5	37	94	0	157	36	14	0	48	1.43
59005554--59005619	19	3.5	19	79	4	89	50	1	10	37	1.47
59005933--59006018	27	3.2	27	86	0	118	17	30	24	27	1.97
59006078--59006115	20	1.9	20	89	10	60	47	2	0	50	1.15
59009046--59009080	14	2.5	14	85	0	52	37	25	5	31	1.80
59012628--59012663	10	3.7	10	85	7	56	58	0	8	33	1.28
59019175--59019200	12	2.2	12	100	0	52	23	0	0	76	0.78
59019158--59019291	9	14.4	9	70	15	69	29	2	2	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59019158--59019217	29	2.0	30	87	9	88	25	1	3	70	1.12
59019158--59019217	30	2.0	29	90	3	93	25	1	3	70	1.12
59019166--59019208	21	2.0	21	86	0	59	23	2	4	69	1.18
59019204--59019268	20	3.4	19	73	10	60	36	3	1	58	1.23
59019212--59019277	20	3.3	20	77	8	64	34	3	3	59	1.28
59036445--59036743	131	2.3	131	92	3	493	41	16	7	34	1.76
59036711--59036911	110	1.8	110	80	6	246	37	14	10	36	1.81
59037031--59037273	132	1.8	131	84	2	335	38	16	9	35	1.81
59037606--59037654	16	2.8	17	81	15	55	46	4	4	44	1.41
59037945--59038006	24	2.6	24	81	0	79	54	1	6	37	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230