genome.fa.s19.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  133  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38730925--38731062	40	3.3	42	77	17	146	68	0	31	0	0.95
38730925--38731059	44	3.0	45	80	10	129	68	0	31	0	0.95
38730895--38731058	26	6.3	26	70	17	85	66	0	32	0	0.96
38730895--38731032	40	3.5	40	78	15	135	65	0	33	0	0.98
38731857--38732303	159	2.8	156	74	15	396	50	8	12	28	1.68
38737426--38737456	12	2.6	12	94	0	53	61	19	0	19	1.35
38737462--38737514	26	2.0	26	92	0	88	47	7	0	45	1.31
38737704--38737729	3	8.7	3	100	0	52	69	30	0	0	0.89
38737796--38737834	20	2.0	21	85	10	55	66	10	0	23	1.22
38737966--38738041	27	2.8	27	85	0	107	15	27	28	27	1.96
38738091--38738165	27	2.7	27	91	6	116	44	0	10	45	1.38
38744364--38744404	18	2.3	18	86	0	55	34	26	17	21	1.95
38746710--38746791	6	13.8	6	97	1	148	68	13	0	18	1.21
38756731--38756764	17	1.9	18	88	5	52	58	5	2	32	1.37
38757581--38757639	11	5.4	11	86	13	77	23	35	0	40	1.55
38758052--38758133	41	2.0	41	95	0	146	26	21	21	29	1.99
38759921--38760017	34	2.8	34	85	7	124	44	2	7	46	1.42
38763302--38763774	95	4.7	103	81	7	437	39	16	2	41	1.63
38763438--38763605	43	3.7	43	70	14	138	37	22	2	38	1.67
38763342--38763746	95	4.2	94	83	6	438	39	17	2	39	1.65
38768804--38768888	29	2.9	27	75	13	80	40	22	23	14	1.90
38771642--38771673	2	16.0	2	93	0	55	46	0	50	3	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38771645--38771677	10	3.3	10	95	0	57	42	0	51	6	1.26
38771642--38771681	14	2.9	14	92	0	62	42	0	50	7	1.30
38773285--38773338	27	2.0	27	82	13	67	31	3	3	61	1.31
38780720--38780745	13	2.0	13	100	0	52	23	7	30	38	1.83
38781230--38781307	27	2.9	27	98	0	147	44	20	10	24	1.82
38796375--38796406	16	2.0	16	93	0	55	25	15	0	59	1.36
38796630--38796825	51	3.9	50	80	8	236	30	27	16	25	1.96
38796780--38796812	14	2.5	13	90	9	50	39	27	9	24	1.85
38796632--38796816	101	1.8	102	87	3	275	30	26	17	25	1.97
38807748--38807799	9	5.7	9	76	13	52	34	5	40	19	1.75
38807748--38807799	19	2.9	17	78	13	59	34	5	40	19	1.75
38809694--38809720	14	1.9	14	100	0	54	29	0	37	33	1.58
38810190--38810243	27	2.0	28	85	3	74	50	0	7	42	1.30
38810430--38810458	14	2.0	15	93	6	51	37	34	0	27	1.57
38812892--38812944	22	2.4	22	81	12	56	52	7	0	39	1.30
38818574--38818647	25	3.0	25	78	7	78	28	27	16	28	1.97
38818583--38818655	25	2.9	25	82	8	94	28	27	17	26	1.98
38821821--38822050	115	2.0	115	93	1	399	39	9	20	31	1.83
38826306--38826343	15	2.5	15	83	12	51	36	2	10	50	1.51
38830222--38830293	35	2.1	35	91	0	117	31	18	20	29	1.96
38840538--38840610	25	2.9	25	91	0	119	36	16	19	27	1.93
38842030--38842067	20	1.9	20	84	10	51	36	10	5	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38857988--38858028	20	2.0	20	95	0	73	31	7	9	51	1.62
38858732--38858938	82	2.5	82	88	1	299	28	14	11	46	1.78
38858711--38858966	82	3.1	81	83	5	284	28	14	11	46	1.79
38861183--38861554	82	4.5	82	80	2	374	29	15	9	44	1.79
38866063--38866111	20	2.5	20	89	0	71	28	6	10	55	1.57
38869071--38869240	27	6.3	28	80	9	131	35	18	21	24	1.96
38869071--38869240	81	2.1	81	80	6	184	35	18	21	24	1.96
38869071--38869240	54	3.1	54	74	5	148	35	18	21	24	1.96
38869289--38869355	23	2.8	24	86	2	82	17	7	26	47	1.74
38869290--38869371	24	3.5	23	83	5	92	18	7	26	47	1.74
38869543--38869689	64	2.3	64	91	0	240	19	20	23	36	1.95
38869545--38869696	32	4.8	32	73	4	128	21	21	21	35	1.96
38869708--38869754	22	2.1	22	84	0	58	19	12	17	51	1.77
38869766--38869819	26	2.1	26	85	0	72	20	29	18	31	1.96
38869773--38869824	26	2.0	26	88	0	77	23	26	17	32	1.96
38870566--38870627	20	3.1	20	83	0	79	20	19	19	40	1.92
38870566--38870693	40	3.2	40	81	0	139	21	21	18	39	1.93
38870616--38870703	40	2.2	40	89	0	131	18	22	21	37	1.94
38875145--38875342	41	4.8	41	87	1	245	32	25	23	18	1.97
38875117--38875342	82	2.8	81	80	4	256	33	23	23	19	1.97
38875275--38875306	16	2.0	16	93	0	55	28	18	28	25	1.98
38878575--38878616	22	1.9	22	85	9	59	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38878582--38878670	33	2.8	32	88	6	126	52	3	4	39	1.38
38879244--38879307	19	3.3	20	82	8	71	37	0	4	57	1.19
38884312--38884347	11	3.2	11	96	4	63	19	38	8	33	1.82
38895184--38895224	9	4.6	9	87	9	57	63	2	0	34	1.08
38895184--38895224	17	2.3	19	87	8	59	63	2	0	34	1.08
38897086--38897139	19	2.8	19	91	0	90	37	14	9	38	1.79
38897063--38897139	38	1.9	41	87	10	115	40	14	7	37	1.75
38897739--38898224	101	4.8	101	89	1	726	25	22	21	30	1.99
38897809--38897965	51	3.1	51	62	1	118	25	19	22	33	1.97
38897824--38898193	50	7.4	50	62	8	142	24	22	21	32	1.98
38898070--38898225	50	3.1	49	64	13	120	24	25	22	28	2.00
38898558--38898767	44	5.0	44	82	12	244	30	25	16	26	1.97
38898614--38898679	33	2.0	34	96	3	125	27	25	22	24	2.00
38898570--38898721	77	2.0	78	89	1	234	31	25	18	24	1.97
38900122--38900168	16	2.7	17	87	9	60	2	19	0	78	0.85
38905386--38905477	19	4.8	19	91	0	157	38	16	7	38	1.77
38905363--38905477	38	2.9	38	92	5	176	39	16	6	37	1.76
38905655--38905687	15	2.1	16	88	11	50	27	0	6	66	1.15
38911561--38911594	16	2.1	17	88	5	52	64	0	0	35	0.94
38913084--38913145	15	4.3	15	73	19	51	53	0	3	43	1.17
38914207--38914332	50	2.5	50	82	0	153	36	24	11	26	1.90
38915269--38915324	25	2.2	26	84	9	71	51	5	25	17	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38916571--38916628	28	2.1	28	87	6	82	18	29	18	32	1.96
38916618--38916801	29	6.3	29	83	0	170	37	20	14	28	1.91
38916618--38916801	87	2.1	89	81	8	207	37	20	14	28	1.91
38926085--38926118	15	2.3	15	94	0	59	70	0	14	14	1.17
38931356--38931388	17	1.9	17	100	0	66	36	0	27	36	1.57
38939763--38939832	29	2.4	29	88	4	106	38	12	27	21	1.90
38939821--38939893	29	2.5	30	93	2	121	43	10	28	16	1.82
38939763--38940011	30	8.4	30	77	7	122	37	13	26	22	1.91
38940734--38940860	43	3.1	42	63	19	106	32	6	19	41	1.77
38940697--38940860	79	2.1	80	96	1	303	34	6	19	39	1.78
38947115--38947184	29	2.4	29	78	0	77	34	10	30	25	1.89
38947174--38947363	30	6.4	30	77	4	161	38	13	27	20	1.90
38947174--38947363	60	3.2	60	74	6	197	38	13	27	20	1.90
38947208--38947393	90	2.1	90	83	4	232	36	12	29	22	1.91
38947174--38947393	30	7.4	29	75	5	129	37	12	28	21	1.90
38951720--38952020	150	2.0	150	94	0	530	32	18	20	28	1.96
38968391--38968635	28	8.8	28	89	1	375	33	25	20	20	1.97
38968822--38968893	27	2.7	27	95	0	126	19	11	26	43	1.84
38975848--38975900	23	2.4	22	76	20	56	9	18	1	69	1.25
38984580--38984648	37	1.9	35	82	11	86	39	4	2	53	1.36
38984666--38984782	62	1.9	62	82	5	150	41	5	4	49	1.44
38986673--38986920	50	4.9	50	77	7	207	28	19	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38989789--38989887	40	2.5	38	82	6	110	41	5	6	47	1.50
38992661--38992722	31	2.0	31	100	0	124	32	9	16	41	1.80
38998850--38998910	31	2.0	31	100	0	122	32	9	14	42	1.79
39000821--39000845	11	2.3	11	100	0	50	16	0	24	60	1.36
39003939--39003973	17	2.1	17	94	0	61	28	11	31	28	1.92
39015022--39015145	25	5.0	25	85	3	153	29	16	23	30	1.96
39015099--39015153	25	2.2	25	83	6	67	25	23	25	25	2.00
39031293--39031344	22	2.4	22	83	6	61	30	7	25	36	1.84
39050360--39050419	29	2.1	29	100	0	120	30	0	13	56	1.37
39059550--39059611	15	4.2	15	76	12	65	40	0	1	58	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230