genome.fa.s19.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  214  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63589094--63589159	18	3.7	18	82	8	80	10	42	9	37	1.71
63591818--63591883	31	2.2	31	86	10	93	48	7	4	39	1.52
63599580--63599636	21	2.8	20	72	17	53	12	15	0	71	1.13
63616114--63616155	20	2.1	20	86	8	59	30	2	14	52	1.54
63618247--63618299	21	2.5	21	78	6	63	64	24	5	5	1.38
63619895--63619941	21	2.2	22	81	11	62	36	12	6	44	1.68
63631345--63631446	45	2.3	45	89	3	152	17	13	47	21	1.82
63631429--63631473	15	3.2	14	81	18	58	6	8	60	24	1.51
63631429--63631466	12	2.8	13	88	11	51	7	10	57	23	1.58
63631386--63631526	78	1.9	75	88	8	216	15	12	48	22	1.79
63631417--63631526	27	4.2	27	67	11	84	14	11	50	22	1.75
63631386--63631542	72	2.2	69	83	13	176	15	11	50	22	1.76
63633043--63633264	106	2.1	107	94	0	392	46	11	13	28	1.78
63641076--63641134	30	1.9	31	86	10	86	45	6	3	44	1.47
63642800--63642829	15	2.1	15	93	6	53	26	0	6	66	1.16
63644332--63644391	31	2.0	30	90	3	93	31	13	6	48	1.68
63646461--63646610	75	2.0	75	100	0	300	32	17	12	38	1.86
63648999--63649204	107	1.9	107	93	0	358	33	18	18	29	1.95
63659053--63659078	7	3.7	7	100	0	52	76	0	0	23	0.78
63664602--63664713	39	2.8	40	91	2	172	22	15	28	33	1.94
63665067--63665121	7	7.7	7	97	2	101	27	0	29	43	1.55
63665148--63665191	7	6.3	7	78	0	52	20	2	50	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63665150--63665189	21	1.9	21	89	0	62	22	2	45	30	1.66
63665179--63665214	15	2.4	14	90	9	54	30	0	36	33	1.58
63666256--63666289	7	5.0	7	85	7	52	0	58	0	41	0.98
63670048--63670199	43	3.5	42	87	3	205	25	13	28	31	1.94
63670008--63670199	86	2.3	85	86	1	251	27	12	28	32	1.93
63675383--63675435	16	3.2	16	89	5	88	28	0	33	37	1.58
63675415--63675506	45	2.1	45	85	2	123	28	6	28	36	1.82
63675652--63675706	15	3.4	16	80	16	53	54	1	0	43	1.10
63675658--63675706	16	2.9	18	80	20	61	55	0	0	44	0.99
63675754--63675966	67	3.1	67	64	19	161	46	3	3	46	1.35
63675559--63675891	156	2.1	156	96	0	603	42	3	6	47	1.44
63675828--63675862	18	2.0	17	88	5	52	54	0	0	45	0.99
63675745--63676004	137	1.9	136	91	0	394	45	3	4	47	1.39
63675766--63676044	137	2.0	135	82	6	330	45	5	3	45	1.42
63676068--63676146	26	3.0	26	70	20	65	49	3	1	45	1.28
63681930--63681959	14	2.1	14	100	0	60	6	13	46	33	1.69
63687055--63687084	14	2.1	14	100	0	60	6	13	46	33	1.69
63689377--63689530	27	5.8	27	82	10	210	41	17	19	21	1.90
63691133--63691162	15	2.1	15	93	6	53	26	0	6	66	1.16
63691535--63691586	27	2.0	25	82	14	61	32	5	3	57	1.40
63692107--63692152	19	2.4	19	85	3	65	21	2	2	73	1.04
63693112--63693175	32	2.1	30	85	5	83	31	18	7	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63703081--63703120	19	2.1	19	86	9	55	70	5	0	25	1.08
63705862--63705909	17	2.8	17	80	3	60	66	0	0	33	0.92
63706802--63706857	21	2.8	19	89	10	94	37	10	16	35	1.83
63706802--63706880	19	3.7	22	80	14	78	36	8	16	37	1.80
63707797--63707823	3	9.0	3	100	0	54	33	0	0	66	0.92
63709866--63709896	5	6.2	5	100	0	62	38	19	19	22	1.93
63721188--63721225	20	2.0	19	85	10	51	44	18	2	34	1.64
63721270--63721301	3	10.7	3	100	0	64	65	0	0	34	0.93
63721339--63721386	13	3.7	13	78	10	62	31	6	25	37	1.81
63730062--63730205	48	3.0	48	80	10	161	40	6	29	22	1.79
63731701--63731740	17	2.4	17	86	0	53	27	2	2	67	1.16
63732013--63732087	29	2.6	29	89	0	114	52	22	16	9	1.72
63733707--63733746	6	6.7	6	100	0	80	85	0	0	15	0.61
63735179--63735205	14	1.9	14	100	0	54	85	0	7	7	0.75
63735547--63735604	29	2.0	29	96	0	107	31	25	13	29	1.94
63740071--63740108	3	12.7	3	100	0	76	65	0	0	34	0.93
63740201--63740233	12	2.8	12	82	17	50	60	0	0	39	0.97
63741423--63741450	14	2.0	14	100	0	56	14	0	21	64	1.29
63741867--63741914	13	3.3	14	81	16	53	68	0	14	16	1.21
63741845--63741905	16	3.9	16	74	21	58	72	0	13	14	1.13
63743101--63743818	46	15.6	46	91	1	1044	28	16	26	28	1.97
63743803--63744117	88	3.6	88	94	0	540	28	25	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63743807--63744117	44	7.1	43	67	15	188	28	25	22	23	1.99
63744415--63744442	14	2.0	14	100	0	56	64	21	0	14	1.29
63745629--63745661	12	2.8	12	82	17	50	39	0	0	60	0.97
63745753--63745817	3	21.7	3	100	0	130	33	0	0	66	0.92
63747843--63747872	6	4.8	6	95	4	51	86	0	0	13	0.57
63750839--63750869	14	2.2	14	94	0	53	38	16	12	32	1.86
63751210--63751285	32	2.4	32	86	0	98	23	23	5	47	1.72
63753593--63753630	19	2.0	19	89	0	58	36	21	5	36	1.76
63758013--63758098	36	2.3	36	80	6	91	37	15	9	38	1.79
63758108--63758169	32	1.9	32	86	0	88	24	24	4	46	1.71
63758108--63758183	32	2.4	32	78	12	84	26	25	3	44	1.71
63758857--63758921	27	2.4	27	92	0	103	32	6	23	38	1.79
63759613--63759664	21	2.5	21	80	0	59	42	5	15	36	1.71
63765999--63766038	19	2.1	19	86	9	55	55	0	15	30	1.41
63769767--63769791	13	1.9	13	100	0	50	16	0	12	72	1.13
63770947--63771052	50	2.2	48	81	3	122	44	14	7	33	1.73
63779196--63779435	39	6.1	39	89	4	338	47	20	2	30	1.62
63779196--63779435	121	2.0	117	90	3	372	47	20	2	30	1.62
63787547--63787668	23	5.3	23	85	3	174	32	27	18	21	1.97
63787547--63787666	46	2.6	46	93	0	195	32	27	19	20	1.97
63787837--63787875	14	2.8	14	96	0	69	30	17	0	51	1.46
63791460--63791543	30	2.8	30	77	15	93	65	4	2	27	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63791469--63791531	27	2.2	28	83	5	74	69	3	1	25	1.12
63792409--63792456	24	2.0	24	95	0	87	37	6	0	56	1.25
63792525--63792599	27	2.8	27	93	4	125	25	29	29	16	1.96
63792753--63792791	19	2.0	21	85	10	55	23	0	10	66	1.22
63792837--63792889	3	17.3	3	92	3	88	32	0	3	64	1.12
63792888--63792934	3	15.7	3	100	0	94	0	0	31	68	0.90
63793723--63793760	18	2.1	18	95	0	67	34	7	47	10	1.67
63799190--63799370	5	34.8	5	70	17	70	1	28	0	70	0.95
63799238--63799409	4	42.8	4	71	21	112	1	27	0	70	0.96
63799227--63799369	33	4.4	33	71	17	88	1	27	0	70	0.95
63799258--63799371	49	2.4	48	84	8	142	1	27	0	71	0.96
63799229--63799418	39	4.8	42	77	14	197	1	28	0	69	0.98
63799450--63799519	27	2.6	27	93	4	115	17	28	28	25	1.97
63799450--63799528	27	2.9	27	85	7	106	16	30	27	25	1.97
63799593--63799638	23	2.0	23	95	0	83	54	0	8	36	1.32
63799593--63799658	23	2.6	24	81	16	71	50	1	10	37	1.47
63800640--63800674	4	8.8	4	93	0	61	25	2	48	22	1.64
63801901--63801925	13	1.9	13	100	0	50	32	0	0	68	0.90
63803880--63803986	21	5.0	21	78	16	96	37	0	0	60	1.09
63803891--63803986	41	2.3	40	77	19	99	38	1	0	60	1.04
63804043--63804102	12	5.1	12	75	18	63	41	0	1	56	1.09
63804027--63804087	22	2.6	22	76	7	68	39	0	1	59	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63804064--63804093	14	2.2	14	94	5	53	30	0	0	70	0.88
63804043--63804131	34	2.6	36	80	3	94	40	3	1	55	1.24
63808326--63808364	20	2.0	20	100	0	78	41	5	0	53	1.23
63810556--63810608	17	3.2	17	75	2	54	60	1	0	37	1.08
63810515--63810582	23	3.0	23	78	6	66	60	2	1	35	1.21
63816821--63816928	15	7.2	15	67	12	78	44	7	22	25	1.79
63816815--63816938	30	4.1	30	93	1	203	43	6	24	25	1.78
63821508--63821615	15	7.2	15	65	12	69	45	7	21	25	1.78
63821504--63821615	30	3.7	30	90	4	172	46	7	21	25	1.76
63821504--63821624	60	2.0	60	91	3	199	45	6	22	25	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230