genome.fa.s19.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  131  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38205403--38205443	17	2.4	18	80	8	50	14	24	4	56	1.58
38205372--38205427	24	2.3	25	79	14	64	10	23	3	62	1.43
38209680--38209710	12	2.6	12	100	0	62	25	16	12	45	1.83
38209760--38209830	37	1.9	37	83	11	92	4	18	2	74	1.10
38209756--38209816	16	3.8	16	72	14	54	4	19	1	73	1.10
38212397--38212493	30	3.2	29	74	8	97	27	16	27	27	1.97
38213057--38213086	11	2.7	11	100	0	60	83	6	10	0	0.81
38213057--38213161	6	17.3	6	68	8	61	72	3	17	6	1.21
38213061--38213118	18	3.3	18	82	2	73	74	6	13	5	1.20
38213045--38213163	12	10.0	12	71	20	63	70	3	17	8	1.26
38213100--38213181	27	3.2	26	79	17	82	67	2	20	9	1.32
38213124--38213175	14	3.8	13	80	10	59	71	1	19	7	1.20
38213125--38213181	13	4.2	13	77	20	62	70	1	17	10	1.24
38215014--38215067	20	2.7	20	82	0	63	24	20	18	37	1.94
38215014--38215087	30	2.5	30	86	8	98	21	20	18	39	1.93
38215014--38215078	20	3.2	20	71	16	53	23	21	16	38	1.93
38218174--38218215	18	2.3	18	87	0	57	80	2	9	7	0.97
38224093--38224146	17	3.2	17	75	0	54	74	3	12	9	1.20
38228598--38228660	21	3.0	21	85	2	72	33	33	4	28	1.78
38232718--38232779	10	5.9	10	74	10	52	33	32	3	30	1.74
38232718--38232780	21	3.0	21	88	2	90	33	33	3	30	1.74
38234880--38234926	20	2.3	20	81	0	58	29	34	12	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38236397--38236461	20	3.3	19	73	16	51	38	16	21	23	1.93
38237709--38237742	18	1.9	18	88	5	52	5	35	5	52	1.50
38238775--38238815	16	2.7	15	79	20	57	7	14	9	68	1.39
38238808--38238880	12	5.5	13	78	15	69	13	6	4	75	1.15
38240499--38240563	20	3.3	19	73	16	51	38	16	21	23	1.93
38242725--38243104	40	9.6	40	91	3	529	24	20	28	27	1.99
38242725--38243104	79	4.8	80	89	3	529	24	20	28	27	1.99
38242725--38243104	119	3.2	120	89	3	529	24	20	28	27	1.99
38250800--38251087	40	7.6	39	84	12	325	24	20	27	27	1.99
38250800--38251087	72	3.8	77	84	9	355	24	20	27	27	1.99
38250837--38251122	111	2.6	112	83	7	289	24	19	27	27	1.99
38250797--38251122	151	2.2	149	79	12	344	25	19	27	27	1.99
38256272--38256368	30	3.2	30	75	2	106	28	15	26	28	1.96
38258469--38258498	12	2.5	12	100	0	60	26	16	13	43	1.85
38258560--38258603	5	8.6	5	80	14	54	0	18	2	79	0.83
38258544--38258594	20	2.6	19	80	17	59	3	17	1	76	1.03
38258544--38258599	15	3.8	14	82	15	60	3	17	1	76	1.01
38258560--38258613	26	2.1	26	83	13	67	0	18	3	77	0.91
38260655--38260691	15	2.6	14	88	12	58	75	8	5	10	1.17
38275785--38275846	33	1.9	32	87	9	90	41	17	17	22	1.90
38275797--38275849	16	3.2	16	72	15	54	39	18	18	22	1.92
38280503--38280549	21	2.2	21	85	7	60	36	19	17	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38281913--38281965	25	2.1	26	85	3	72	35	0	0	64	0.94
38286610--38286701	43	2.1	44	97	2	177	23	21	20	33	1.97
38299188--38299245	9	6.4	9	87	0	89	39	24	12	24	1.89
38299188--38299245	27	2.1	27	96	0	107	39	24	12	24	1.89
38306312--38306354	15	2.6	17	89	10	72	37	16	4	41	1.69
38309911--38310061	82	1.9	81	85	4	214	27	17	27	27	1.97
38309911--38310066	27	5.7	27	81	6	154	27	16	28	27	1.97
38309910--38310087	27	6.6	27	79	5	144	26	16	28	28	1.97
38309903--38310087	82	2.3	81	77	2	201	27	16	28	28	1.97
38316069--38316166	10	10.1	9	71	21	56	58	0	1	40	1.05
38316068--38316169	31	3.0	31	75	20	105	57	0	0	41	1.05
38316084--38316208	39	3.2	39	89	4	196	62	0	2	35	1.08
38316103--38316135	16	2.0	17	88	5	50	63	0	0	36	0.95
38316068--38316158	11	8.9	11	73	22	83	57	0	1	41	1.06
38317370--38317432	19	3.4	19	76	10	58	71	0	3	25	1.01
38317380--38317421	19	2.2	20	91	4	68	71	0	2	26	0.98
38317399--38317452	28	2.0	27	82	10	65	64	1	1	31	1.14
38320529--38320606	35	2.2	35	93	0	129	26	24	21	26	1.99
38324793--38324863	35	2.0	35	100	0	142	33	11	32	22	1.90
38324828--38325170	49	7.1	49	91	2	536	31	8	30	28	1.87
38324828--38325170	96	3.6	96	92	3	541	31	8	30	28	1.87
38325289--38325367	37	2.1	37	90	0	122	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38333946--38334302	102	3.5	102	91	1	545	19	18	28	33	1.95
38341522--38341723	103	2.0	103	97	0	386	19	18	28	33	1.96
38341662--38341766	43	2.5	43	92	1	167	22	18	29	29	1.97
38341559--38341830	145	1.9	146	88	2	413	20	19	29	30	1.97
38344003--38344032	13	2.3	13	94	0	51	56	13	6	23	1.60
38347256--38347366	41	2.7	41	87	0	159	23	27	19	28	1.98
38369983--38370093	41	2.7	41	85	0	150	24	28	18	28	1.98
38370317--38370372	26	2.2	25	81	12	60	44	14	1	39	1.55
38372647--38372710	18	3.6	18	72	8	58	71	1	20	6	1.15
38373144--38373173	16	1.9	15	93	6	51	20	3	33	43	1.68
38378530--38378561	15	2.1	16	94	5	57	78	3	6	12	1.06
38381506--38381535	12	2.5	12	94	0	51	6	30	40	23	1.80
38388831--38388903	26	2.8	26	78	11	78	34	39	13	12	1.82
38391683--38391745	31	2.0	32	93	3	110	39	7	22	30	1.82
38393588--38393670	35	2.4	35	79	4	96	30	27	19	22	1.98
38394679--38394737	25	2.3	26	85	8	86	18	16	22	42	1.89
38396581--38396681	27	3.8	26	76	6	96	33	21	24	19	1.97
38396797--38397127	27	12.2	27	83	5	373	25	15	19	39	1.91
38396797--38397127	81	4.1	81	85	3	423	25	15	19	39	1.91
38399271--38399312	12	3.4	13	83	9	52	54	0	7	38	1.28
38403774--38403945	79	2.2	79	84	3	220	25	21	27	25	1.99
38403721--38403943	40	5.6	39	81	8	209	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38403801--38403978	79	2.2	80	80	3	191	25	21	28	24	1.99
38411172--38411343	79	2.2	79	84	3	220	25	21	27	25	1.99
38411119--38411341	40	5.6	39	81	8	209	25	21	27	25	1.99
38411199--38411376	79	2.2	80	80	3	191	25	21	28	24	1.99
38415143--38415171	12	2.3	13	94	5	51	34	10	0	55	1.34
38430981--38431039	21	2.8	21	85	10	68	54	8	1	35	1.41
38430960--38431045	25	3.5	23	72	10	64	54	8	1	36	1.38
38431392--38431435	22	2.0	22	95	0	79	36	25	29	9	1.86
38432046--38432121	21	3.7	21	87	7	120	36	11	10	40	1.76
38432059--38432122	19	3.3	19	93	4	101	37	14	9	39	1.78
38432484--38432655	44	3.9	44	77	8	168	30	22	16	31	1.95
38432636--38433434	132	6.1	132	91	0	1267	25	24	19	30	1.98
38432641--38433429	263	3.0	264	91	0	1258	25	24	19	30	1.98
38432804--38433384	44	13.2	44	64	11	150	25	23	19	30	1.98
38436016--38436042	6	4.5	6	100	0	54	0	14	0	85	0.61
38439479--38439546	23	3.0	22	85	10	84	54	7	1	36	1.37
38440510--38440589	19	3.7	21	71	22	76	37	12	7	42	1.71
38440502--38440590	19	4.4	19	70	24	58	35	14	6	42	1.72
38440487--38440589	45	2.3	44	85	9	131	38	13	6	40	1.71
38440719--38440747	12	2.3	13	94	5	51	34	10	0	55	1.34
38451242--38451294	25	2.1	25	100	0	106	41	18	11	28	1.85
38475088--38475191	52	2.0	52	98	0	199	39	19	4	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38477740--38477774	18	2.0	17	88	5	52	54	0	2	42	1.15
38477903--38477957	19	3.3	19	62	32	52	58	0	1	40	1.09
38478047--38478071	7	3.6	7	100	0	50	44	0	12	44	1.41
38479041--38479072	15	2.1	15	100	0	64	28	28	18	25	1.98
38485839--38485871	14	2.3	15	89	5	50	18	3	0	78	0.87
38487809--38487862	19	2.8	19	94	0	99	37	16	9	37	1.81
38487786--38487862	38	1.9	40	87	10	113	38	16	7	36	1.78
38488508--38488546	20	2.0	20	94	0	69	35	30	15	17	1.91
38490150--38490199	21	2.4	21	80	16	59	50	32	0	18	1.47
38490165--38490198	11	3.1	11	87	12	52	44	35	0	20	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230