Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  44  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11852163--11852344
72
2.6
71
83
3
190
33
20
16
29
1.95
11852357--11852553
73
2.8
71
82
6
211
36
20
15
27
1.93
11852426--11852671
123
2.0
126
84
4
329
35
19
15
28
1.93
11851581--11853053
391
3.7
391
91
4
2137
34
19
16
29
1.94
11852748--11852930
73
2.6
72
83
4
210
32
21
17
28
1.96
11852817--11853095
123
2.2
126
84
5
352
35
20
16
27
1.94
11852035--11853067
196
5.3
196
97
0
1914
35
20
15
28
1.93
11853151--11853381
122
1.9
125
83
7
310
33
22
14
29
1.94
11853323--11853453
70
1.9
70
88
0
199
29
20
12
36
1.90
11859328--11859372
21
2.1
21
100
0
90
8
33
13
44
1.75
11875093--11875128
18
2.1
18
94
5
65
33
11
13
41
1.80
11875082--11875128
18
2.8
16
81
12
58
42
12
12
31
1.81
11875130--11875165
17
2.2
16
90
5
54
47
11
2
38
1.54
11875093--11875175
37
2.2
37
80
2
94
38
10
9
40
1.73
11875147--11875187
22
2.0
20
85
9
55
46
7
4
41
1.53
11875199--11875330
21
6.8
20
64
18
55
42
9
12
35
1.75
11875196--11875305
37
2.9
37
76
14
116
42
10
14
32
1.79
11875247--11875330
21
4.2
20
75
17
84
41
5
11
40
1.66
11875306--11875405
50
2.0
50
88
0
146
43
10
11
36
1.74
11875359--11875454
17
5.6
18
71
13
76
43
8
13
34
1.74
11875359--11875450
34
2.7
35
83
6
116
41
8
14
35
1.76
11875456--11875487
17
1.9
17
93
6
57
46
12
15
25
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11875426--11875518
39
2.4
40
84
10
122
48
11
10
29
1.73
11875426--11875518
38
2.4
38
83
7
116
48
11
10
29
1.73
11875932--11875971
21
1.9
21
94
0
71
42
20
20
17
1.89
11875993--11876096
7
13.9
8
78
17
50
0
21
2
75
0.92
11875996--11876082
21
4.1
20
80
13
93
0
19
3
77
0.92
11875996--11876081
7
11.9
7
80
11
84
0
18
3
77
0.90
11876358--11876401
18
2.4
18
88
0
70
6
27
47
18
1.73
11876444--11876516
6
12.3
6
88
7
60
0
26
0
73
0.83
11876445--11876480
17
2.1
17
89
0
54
0
16
0
83
0.65
11876454--11876517
3
22.0
3
85
6
78
0
28
0
71
0.86
11876534--11876577
18
2.5
18
82
10
56
0
43
34
22
1.54
11876596--11876653
20
3.0
20
80
9
68
0
37
0
62
0.96
11876878--11876994
30
3.9
29
77
11
94
44
3
21
30
1.69
11876893--11876994
30
3.4
30
83
2
125
44
3
21
30
1.70
11876990--11877028
16
2.4
17
91
4
62
23
0
2
74
0.94
11876992--11877028
17
2.2
17
90
0
56
18
0
2
78
0.87
11877157--11877219
30
2.1
30
93
0
108
55
15
4
23
1.59
11879934--11879963
15
2.0
15
93
0
51
30
0
0
70
0.88
11891420--11891472
9
5.7
9
82
4
52
22
43
0
33
1.54
11892056--11892110
26
2.1
27
83
10
69
65
1
5
27
1.25
11892055--11892119
22
2.7
23
80
19
64
64
1
6
27
1.26
11899923--11899979
30
1.9
30
96
0
105
26
12
14
47
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11904196--11904419
44
5.1
44
79
0
225
33
16
20
29
1.95
11905955--11906082
60
2.2
60
81
6
147
32
8
1
57
1.39
11905976--11906100
60
2.1
60
86
0
169
31
8
1
58
1.38
11906027--11906425
69
5.8
68
79
7
331
29
7
2
60
1.37
11906090--11906387
70
4.2
71
79
5
223
28
7
3
61
1.37
11906142--11906180
20
1.9
20
89
5
60
28
5
0
66
1.12
11906027--11906449
140
3.0
141
79
9
375
29
7
2
60
1.37
11909869--11909896
14
2.0
14
100
0
56
28
0
21
50
1.49
11916151--11916290
41
3.4
41
72
7
131
25
27
24
23
2.00
11916175--11916327
83
1.8
83
87
2
227
24
25
26
23
2.00
11917048--11917078
5
6.2
5
100
0
62
80
0
0
19
0.71
11924931--11925944
336
3.0
336
94
0
1733
30
15
22
31
1.95
11930527--11930697
40
4.3
40
87
0
243
35
29
19
15
1.93
11931781--11931820
21
1.9
20
85
10
53
50
7
2
40
1.44
11936086--11936147
32
1.9
32
96
0
115
30
30
0
38
1.58
11937305--11937363
29
2.0
29
96
0
109
40
3
8
47
1.51
11949251--11949302
3
17.3
3
95
0
95
36
0
0
63
0.95
11949498--11949535
19
2.0
19
100
0
76
42
21
0
36
1.53
11953999--11954046
20
2.3
21
82
13
64
22
4
2
70
1.15
11953999--11954047
21
2.4
20
86
10
64
24
4
2
69
1.17
11954013--11954052
20
2.0
21
90
5
64
25
5
2
67
1.23
11954892--11954937
24
1.9
24
90
0
74
36
4
8
50
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11961477--11961546
29
2.4
29
83
4
79
28
27
7
37
1.83
11966754--11966847
48
2.0
48
87
8
138
40
27
12
19
1.88
11969267--11969360
48
2.0
48
87
8
138
40
27
12
19
1.88
11977907--11978046
40
3.5
40
76
13
128
30
23
19
26
1.98
11977912--11978047
41
3.4
41
75
14
133
32
24
18
25
1.97
11979819--11979861
15
2.7
16
82
17
54
20
4
11
62
1.46
11984731--11984787
23
2.5
22
81
10
62
75
0
17
7
1.02
11984859--11985021
42
3.9
42
91
0
245
29
13
28
28
1.94
11987572--11987615
21
2.1
21
86
0
61
38
2
34
25
1.68
11987602--11987737
51
2.7
51
81
0
155
32
18
21
27
1.97
11987906--11988201
44
6.6
44
76
13
255
30
19
20
29
1.97
11997716--11997818
51
2.0
51
100
0
206
45
17
7
29
1.76
11997769--11997874
33
3.2
34
83
10
105
42
16
8
33
1.78
12000930--12001011
26
3.0
27
75
12
87
43
1
2
52
1.22
12001065--12001119
16
3.4
17
78
16
53
49
1
0
49
1.11
12001078--12001122
15
2.8
16
83
10
56
53
0
0
46
1.00
12001078--12001119
16
2.7
15
88
7
57
52
0
0
47
1.00
12001054--12001368
156
2.0
157
94
0
560
49
6
2
41
1.42
12001221--12001255
18
2.0
17
88
5
52
45
0
0
54
0.99
12003371--12003412
14
3.0
14
82
0
57
28
26
19
26
1.98
12003368--12003436
28
2.5
28
82
0
75
31
23
15
28
1.95
12021790--12024563
396
7.0
396
97
0
5154
28
16
16
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12028385--12028430
9
5.3
9
84
5
60
78
0
0
21
0.76
12028385--12028438
17
3.1
16
80
19
56
74
1
0
24
0.92
12028460--12028489
6
4.8
6
95
4
51
63
3
0
33
1.11
12031024--12031074
14
3.6
14
77
15
52
80
0
17
1
0.81
12031032--12031077
8
6.6
7
83
11
51
82
0
17
0
0.67
12034443--12034568
9
13.4
10
70
18
83
71
2
0
25
1.03
12034444--12034531
17
5.0
17
77
14
72
76
2
0
21
0.90
12034541--12034580
20
2.0
21
85
14
57
62
7
2
27
1.35
12034848--12034887
21
1.9
22
85
10
57
40
7
0
52
1.30
12034891--12034945
20
2.7
21
83
10
62
38
1
0
60
1.08
12035095--12035261
87
1.9
87
86
4
239
37
10
19
32
1.86
12044090--12044120
3
10.3
3
100
0
62
32
0
35
32
1.58
12054145--12054579
215
2.0
215
96
0
807
37
6
15
40
1.74
12055497--12055659
45
3.6
45
85
3
193
42
15
19
22
1.89
12060070--12060227
85
1.9
85
90
0
253
19
15
10
54
1.70
12062752--12062806
23
2.4
23
93
0
92
45
18
21
14
1.85
12064368--12064419
24
2.2
24
96
0
95
36
1
7
53
1.41
12071607--12071646
20
2.0
20
90
0
62
32
10
7
50
1.64
12072524--12072566
12
3.7
11
84
9
50
53
4
0
41
1.21
12072536--12072594
12
5.0
12
75
17
52
59
1
0
38
1.08
12072549--12072602
24
2.3
23
81
15
65
62
1
0
35
1.06
12075188--12075331
34
4.2
34
77
5
173
35
22
22
18
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12075170--12075366
34
5.7
34
76
7
139
31
24
24
19
1.98
12075199--12075396
103
1.9
101
86
5
261
33
23
23
19
1.97
12078037--12078188
62
2.3
68
73
15
156
40
25
7
25
1.82
12080340--12080385
18
2.5
19
76
16
51
67
0
4
28
1.10
12080865--12080911
24
1.9
25
83
12
62
65
0
4
29
1.11
12092525--12092709
88
2.1
86
80
10
205
28
28
22
21
1.99
12092660--12093517
131
6.5
131
90
1
1299
30
20
23
25
1.98
12093229--12093808
175
3.3
173
83
5
476
30
21
23
24
1.99
12092836--12093965
44
25.8
44
67
9
227
31
19
23
25
1.98
12093670--12093916
131
1.9
131
84
5
338
32
19
22
25
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230