genome.fa.s19.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  208  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61979408--61979498	5	17.4	5	76	15	78	2	20	2	74	1.03
61979408--61979498	21	4.3	21	73	13	80	2	20	2	74	1.03
61981312--61981376	27	2.4	28	82	10	73	3	20	3	73	1.10
61981309--61981379	16	4.4	15	72	13	52	2	19	2	74	1.07
61990685--61990736	11	4.8	11	83	9	63	1	13	0	84	0.70
61990684--61990739	16	3.5	15	80	9	67	1	14	0	83	0.72
61990675--61990730	26	2.1	27	87	9	80	1	16	1	80	0.88
61990648--61990739	21	4.3	21	69	16	64	2	18	2	77	0.98
61994424--61994619	27	7.3	26	73	12	119	43	21	13	20	1.86
61994424--61994619	54	3.6	53	71	17	143	43	21	13	20	1.86
61994423--61994577	81	1.9	81	80	7	181	43	22	12	21	1.85
61995026--61995133	28	3.9	28	91	0	171	23	22	21	33	1.97
61997943--61997971	8	3.8	8	95	4	51	24	34	0	41	1.55
61998008--61998317	33	8.7	33	68	22	166	31	27	20	20	1.97
61998009--61998219	74	2.8	75	91	2	334	30	27	20	21	1.98
61998120--61998363	102	2.4	102	95	0	427	32	28	18	20	1.96
62002011--62002039	6	5.0	6	95	4	51	34	0	0	65	0.93
62002247--62002298	8	6.5	8	77	14	54	1	15	0	82	0.75
62002238--62002294	25	2.2	25	84	9	71	1	19	1	77	0.95
62002253--62002298	21	2.2	21	88	11	69	2	15	0	82	0.76
62002250--62002301	20	2.6	19	83	16	70	1	17	0	80	0.80
62006638--62006671	17	2.1	17	88	5	52	50	0	17	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62007544--62007643	42	2.4	42	93	0	164	34	11	28	27	1.90
62014952--62015018	22	3.2	21	74	13	68	61	0	1	37	1.05
62015005--62015096	9	9.4	9	67	19	51	68	0	2	29	1.01
62014995--62015067	30	2.5	29	93	4	128	65	0	2	31	1.06
62014947--62015173	40	5.6	40	82	9	271	62	0	2	35	1.10
62014946--62015173	81	2.8	82	86	6	286	61	0	2	35	1.10
62015052--62015159	12	10.4	11	67	22	56	61	0	3	35	1.14
62014995--62015067	29	2.5	29	95	4	130	65	0	2	31	1.06
62019362--62019397	18	1.9	18	88	5	54	58	2	0	38	1.13
62021579--62021630	18	2.8	19	80	11	56	42	0	1	55	1.10
62021579--62021618	19	2.2	18	86	4	53	40	0	2	57	1.12
62028565--62028610	23	2.0	22	83	4	56	58	0	8	32	1.28
62033090--62033123	18	1.9	17	88	5	50	38	0	5	55	1.24
62033651--62033777	36	3.5	36	70	10	114	42	5	4	47	1.47
62033636--62033781	73	2.0	75	93	2	251	39	6	6	48	1.53
62034652--62034691	21	1.9	21	84	0	53	42	0	5	52	1.23
62044629--62044913	142	2.0	141	93	0	489	29	20	26	24	1.99
62045075--62045103	14	2.1	14	100	0	58	51	6	0	41	1.28
62045027--62045180	62	2.5	62	94	2	265	34	7	8	50	1.60
62058044--62058074	14	2.2	14	94	0	53	41	6	19	32	1.77
62059268--62059323	26	2.2	26	81	12	62	71	10	1	16	1.22
62059996--62060044	26	1.9	25	83	4	62	0	30	2	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62060624--62060705	31	2.6	31	88	0	110	30	14	10	43	1.80
62066041--62066135	23	4.1	23	88	0	136	22	28	4	45	1.71
62068110--62068141	13	2.5	13	94	0	55	6	25	46	21	1.74
62071808--62071873	31	2.2	31	86	10	93	43	1	1	53	1.19
62071874--62071916	22	1.9	23	85	4	61	51	0	0	48	1.00
62071862--62071963	27	3.7	27	65	17	66	49	0	1	48	1.19
62071938--62071991	23	2.3	23	72	12	56	51	3	0	44	1.19
62071961--62071995	17	2.0	18	88	5	54	51	8	0	40	1.33
62074040--62074079	12	3.3	12	96	0	71	40	5	0	55	1.22
62074063--62074117	27	2.1	27	89	3	85	29	0	3	67	1.08
62074068--62074125	27	2.2	27	81	3	64	39	0	3	56	1.16
62074581--62074614	18	1.9	18	88	5	52	8	8	5	76	1.15
62074591--62074643	21	2.7	19	80	8	61	15	5	1	77	1.04
62081502--62081596	23	4.1	23	87	0	127	44	4	29	22	1.71
62087021--62087093	27	2.8	25	75	20	62	52	1	1	45	1.18
62089697--62089740	21	2.1	21	95	0	79	29	40	9	20	1.83
62090321--62090564	83	2.9	83	83	6	298	27	22	21	28	1.99
62093756--62093826	15	4.7	15	76	13	65	32	9	1	56	1.41
62099525--62099574	7	7.3	7	76	19	52	68	0	16	16	1.22
62099530--62099561	13	2.5	13	100	0	64	68	0	15	15	1.21
62099525--62099574	20	2.4	21	81	18	61	68	0	16	16	1.22
62099519--62099574	13	4.2	13	86	4	58	71	0	14	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62100819--62102711	174	10.9	174	93	0	3187	29	20	24	24	1.99
62100819--62102711	868	2.2	868	94	1	3291	29	20	24	24	1.99
62102729--62102927	43	4.7	43	69	18	146	33	21	19	25	1.97
62102643--62102976	127	2.6	127	95	0	589	32	22	20	24	1.97
62104482--62104541	15	4.3	14	73	19	54	31	10	1	56	1.42
62107553--62107591	18	2.2	18	85	0	51	43	2	10	43	1.52
62113830--62114034	42	4.6	43	73	18	143	27	20	20	31	1.97
62113835--62114024	97	2.0	97	87	2	274	28	20	20	31	1.97
62114442--62114512	21	3.4	21	88	0	106	4	40	19	35	1.71
62119732--62119786	28	2.0	28	92	0	92	32	5	7	54	1.51
62121255--62121298	23	1.9	23	81	9	54	54	9	2	34	1.44
62120607--62121489	388	2.3	382	89	4	1365	42	22	5	29	1.75
62122001--62122498	113	4.3	114	88	4	718	31	26	18	23	1.97
62122415--62122582	84	2.0	84	92	2	284	35	29	18	16	1.92
62122298--62122974	197	3.4	196	92	2	1099	34	26	18	20	1.96
62122612--62122779	84	2.0	84	90	2	266	35	26	20	16	1.94
62122807--62123058	84	3.0	84	95	0	441	36	28	19	15	1.92
62125803--62125879	29	2.5	31	87	12	106	40	12	7	38	1.73
62127695--62127764	23	3.0	23	81	8	70	32	0	1	65	1.01
62127738--62127795	18	3.3	16	75	15	53	31	0	5	63	1.16
62127737--62127806	35	2.0	34	81	8	79	35	0	4	60	1.17
62128080--62128241	61	2.7	60	78	6	152	38	13	22	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62131364--62131432	3	23.0	3	100	0	138	66	0	0	33	0.92
62131465--62131526	29	2.1	30	81	3	72	67	4	11	16	1.37
62133006--62133199	44	4.4	43	66	11	124	26	26	18	28	1.98
62133649--62134093	44	10.1	44	63	12	142	27	25	20	26	1.99
62132925--62134202	132	9.7	132	89	4	1706	27	24	19	28	1.99
62134275--62134319	17	2.6	17	96	0	81	17	26	13	42	1.86
62135531--62135571	14	2.9	15	82	10	50	12	17	2	68	1.31
62150730--62150776	21	2.4	19	85	7	58	46	17	23	12	1.82
62153342--62153413	31	2.5	30	82	10	87	31	2	5	59	1.35
62153635--62153684	22	2.3	22	79	6	57	22	12	4	62	1.46
62162542--62162575	13	2.6	13	85	0	50	32	35	20	11	1.89
62163503--62163572	21	3.3	21	84	4	88	45	15	24	14	1.83
62166842--62166921	3	26.3	3	76	7	63	58	2	5	33	1.33
62177310--62177340	13	2.5	13	94	5	55	35	12	9	41	1.76
62179284--62179335	20	2.4	22	76	20	56	61	1	7	28	1.34
62180009--62180042	14	2.5	14	95	4	61	14	0	35	50	1.44
62180171--62180218	24	2.0	25	83	4	62	68	6	6	18	1.32
62181313--62181383	33	2.2	33	89	0	106	38	12	4	45	1.62
62185888--62185935	24	2.0	24	83	0	60	39	18	22	18	1.92
62187727--62187760	15	2.4	14	90	5	50	5	17	0	76	0.98
62188368--62188395	9	3.1	9	100	0	56	32	10	10	46	1.73
62188448--62188478	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62190396--62190423	13	2.2	13	100	0	56	32	28	17	21	1.96
62193629--62193706	9	8.2	10	72	18	60	65	0	1	33	1.01
62193664--62193757	29	3.2	30	82	5	86	58	3	1	37	1.21
62194014--62194085	29	2.5	28	79	4	81	36	2	2	58	1.27
62193988--62194066	41	1.9	41	80	14	92	36	2	3	56	1.31
62194173--62194428	88	2.9	88	80	6	273	33	10	21	35	1.87
62195171--62195203	16	2.1	16	88	11	50	63	0	27	9	1.24
62199295--62199340	23	2.0	23	100	0	92	69	13	13	4	1.33
62203189--62203234	19	2.4	20	76	20	53	26	21	8	43	1.81
62207251--62207289	14	2.8	14	84	0	51	56	7	2	33	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230