genome.fa.s19.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  136  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39947523--39947553	16	1.9	16	100	0	62	29	32	6	32	1.83
39953759--39953981	40	5.6	39	81	7	216	26	21	27	25	1.99
39953839--39954016	79	2.2	80	81	3	191	25	21	28	24	1.99
39970324--39970422	28	3.5	29	83	6	114	30	27	15	27	1.96
39973102--39973218	58	2.0	58	94	0	207	44	22	7	25	1.79
39977327--39977387	25	2.5	24	84	12	72	21	27	19	31	1.97
39983012--39983284	35	7.8	35	78	6	259	43	19	8	29	1.79
39983019--39983284	70	3.8	70	85	2	293	42	19	8	29	1.80
39983080--39983284	105	2.0	105	86	3	288	43	20	8	27	1.81
39985780--39985923	27	5.3	27	88	3	173	29	24	6	39	1.81
39985792--39985923	54	2.4	54	88	0	192	31	23	6	39	1.79
39985915--39986105	27	7.1	27	75	7	138	41	21	9	27	1.85
39985959--39986105	54	2.7	54	76	2	152	42	21	8	27	1.81
39985955--39986104	81	1.9	81	84	2	203	43	20	8	28	1.80
39986061--39986163	27	3.7	27	80	10	109	44	18	5	31	1.73
39986194--39986259	27	2.4	27	82	5	80	36	19	22	21	1.95
39986977--39987053	20	3.8	20	89	0	118	42	11	16	28	1.84
39988096--39988221	24	5.2	24	89	5	175	28	22	19	30	1.98
39988274--39988329	11	5.5	11	75	16	66	33	19	10	35	1.87
39988274--39988330	20	2.8	20	100	0	114	35	19	10	35	1.86
39990144--39990200	25	2.3	25	84	0	78	22	28	19	29	1.98
39990345--39990432	42	2.1	42	86	0	122	32	13	17	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39990458--39990536	31	2.5	31	83	0	104	31	16	26	25	1.96
39990520--39990597	29	2.7	29	93	2	138	30	24	24	20	1.98
39994571--39994616	24	1.9	24	86	0	65	32	23	15	28	1.95
39994727--39994784	24	2.4	24	82	11	73	29	18	22	29	1.98
39998949--39998998	23	2.3	23	83	10	61	24	2	28	46	1.64
40001443--40001595	42	3.5	41	74	13	135	24	23	20	30	1.99
40001568--40001749	48	3.8	48	74	5	145	29	24	18	27	1.98
40019833--40019862	13	2.3	13	94	0	51	53	10	16	20	1.71
40022317--40022416	28	3.6	27	78	2	92	19	23	22	36	1.95
40022317--40022427	27	4.1	26	80	9	114	18	22	20	38	1.93
40022317--40022427	55	2.0	54	82	5	134	18	22	20	38	1.93
40027458--40027550	38	2.4	38	85	0	114	24	22	25	26	2.00
40027554--40027794	43	5.6	43	90	0	383	10	24	32	32	1.90
40031983--40032079	38	2.6	38	81	0	113	22	25	27	23	2.00
40032062--40032323	43	6.1	43	89	0	384	12	24	32	30	1.92
40035124--40035148	13	1.9	13	100	0	50	32	20	16	32	1.94
40036579--40036920	47	7.2	47	87	2	486	32	8	30	28	1.87
40036579--40036920	96	3.6	96	90	0	508	32	8	30	28	1.87
40036582--40036920	143	2.4	143	89	3	497	32	8	30	28	1.87
40037038--40037116	37	2.1	37	90	0	122	24	18	31	25	1.98
40038962--40039092	43	3.0	43	97	0	244	23	16	34	25	1.95
40039074--40039147	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40039170--40039567	40	9.9	40	94	1	654	27	19	27	25	1.98
40039171--40039655	120	4.0	117	86	5	569	27	19	27	25	1.99
40039580--40039700	40	3.0	40	79	0	134	23	19	28	27	1.99
40042141--40042165	13	1.9	13	100	0	50	32	20	16	32	1.94
40043597--40043938	47	7.2	47	88	2	495	31	8	30	29	1.87
40043597--40043938	96	3.6	96	91	0	517	31	8	30	29	1.87
40043600--40043938	143	2.4	143	89	3	506	32	8	30	28	1.87
40044056--40044134	37	2.1	37	90	0	122	24	18	31	25	1.98
40049347--40049427	27	3.0	26	84	8	99	16	22	22	39	1.92
40055519--40055548	12	2.5	12	100	0	60	16	16	13	53	1.73
40064924--40064992	24	2.9	24	78	2	59	15	27	0	56	1.40
40064945--40064993	18	2.7	18	83	0	62	16	24	0	59	1.37
40065105--40065138	12	2.8	12	90	0	50	17	23	11	47	1.81
40071324--40071658	48	7.0	48	95	1	600	36	6	26	30	1.82
40071581--40071736	78	2.0	78	94	0	276	37	5	25	32	1.78
40071867--40071969	37	2.8	37	90	0	161	23	21	31	24	1.99
40075212--40075382	93	1.8	93	92	0	288	28	29	20	21	1.98
40075207--40075379	46	3.7	46	79	10	199	29	28	20	21	1.98
40075802--40075861	30	2.0	30	83	0	75	33	23	5	38	1.76
40083273--40083413	56	2.5	54	82	4	147	30	34	17	17	1.93
40086756--40087020	47	5.5	48	75	13	231	27	21	27	23	1.99
40086742--40087021	94	2.9	96	84	7	352	28	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40086789--40087017	47	4.7	49	80	7	252	28	20	27	22	1.99
40088043--40088218	56	3.1	56	99	0	343	45	9	22	22	1.80
40089347--40089531	40	4.7	40	81	5	198	24	22	27	25	2.00
40089347--40089531	79	2.3	81	83	7	218	24	22	27	25	2.00
40089402--40089554	79	1.9	79	84	7	204	26	20	27	25	1.99
40090496--40090564	32	2.2	32	94	0	120	30	17	11	40	1.85
40095477--40095692	40	5.4	39	81	8	202	26	20	27	25	1.99
40103458--40103628	39	4.3	39	85	7	202	25	21	28	25	1.99
40103405--40103626	79	2.8	79	82	4	243	25	21	27	25	1.99
40103485--40103661	79	2.3	79	81	3	196	25	21	28	24	1.99
40114091--40114124	15	2.4	14	90	5	50	14	2	5	76	1.09
40115945--40116194	46	5.5	46	82	3	272	45	15	20	18	1.85
40116250--40116312	31	2.0	31	100	0	126	39	9	19	31	1.83
40118769--40118805	17	2.2	17	90	4	58	10	0	13	75	1.04
40118943--40118968	11	2.4	11	100	0	52	19	26	0	53	1.45
40123671--40123865	50	3.9	50	79	3	162	21	26	24	27	1.99
40133807--40133848	18	2.3	18	95	0	75	30	11	11	45	1.77
40138888--40138932	14	3.0	14	76	17	54	46	8	13	31	1.74
40141370--40141433	21	3.0	21	83	0	83	9	21	18	50	1.75
40147164--40147293	40	3.3	39	84	5	163	23	20	28	26	1.99
40155013--40155142	40	3.3	39	85	3	170	23	21	28	26	1.99
40155013--40155177	79	2.1	79	80	2	179	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40159263--40159313	25	2.0	25	81	14	59	60	7	9	21	1.53
40159525--40159549	8	3.1	8	100	0	50	76	0	0	24	0.80
40160639--40160697	6	9.8	6	88	0	91	16	38	0	44	1.48
40160639--40160724	24	3.6	23	79	6	91	15	40	3	40	1.64
40160896--40160925	12	2.5	12	94	0	51	16	10	36	36	1.82
40165613--40165638	10	2.6	10	100	0	52	61	0	0	38	0.96
40165857--40165899	18	2.4	18	92	0	68	41	0	34	23	1.55
40172098--40172693	198	3.0	199	95	1	1061	29	15	16	38	1.89
40174326--40174356	9	3.4	9	90	0	53	25	12	22	38	1.90
40174410--40174446	18	2.1	18	94	0	65	51	13	5	29	1.63
40174497--40174554	30	1.9	30	92	3	98	18	41	0	39	1.51
40175350--40175377	5	5.6	5	100	0	56	21	17	17	42	1.89
40175469--40175495	5	5.4	5	100	0	54	22	18	18	40	1.91
40175682--40175715	16	2.1	17	88	5	52	29	5	2	61	1.34
40177382--40177430	12	4.3	12	80	12	50	36	0	2	61	1.08
40182336--40182400	25	2.6	25	97	0	121	29	18	30	21	1.97
40182334--40182446	25	4.7	23	80	11	93	30	19	28	21	1.97
40182510--40182571	26	2.4	26	81	5	72	37	24	24	14	1.93
40186972--40187139	86	1.9	87	92	1	284	38	22	9	29	1.85
40187223--40187286	8	7.4	8	80	13	56	68	0	3	28	1.04
40187234--40187284	19	2.7	19	84	3	68	74	0	3	21	0.98
40187277--40187339	10	6.7	10	75	17	55	57	1	1	39	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40187273--40187330	18	3.2	17	79	11	71	62	0	1	36	1.06
40187225--40187303	28	2.8	28	78	3	79	68	0	2	29	1.03
40187220--40187330	37	3.1	36	79	10	109	65	0	2	31	1.06
40187425--40187457	11	3.1	11	86	4	50	33	3	0	63	1.10
40187707--40187872	87	1.9	86	85	6	228	31	10	20	37	1.87
40196296--40196322	14	1.9	14	100	0	54	37	22	25	14	1.93
40205011--40205067	20	3.1	18	80	9	62	28	5	7	59	1.45
40208591--40208727	42	3.5	42	71	17	148	33	27	16	21	1.95
40208589--40208761	75	2.3	75	93	0	301	33	27	17	20	1.96
40216104--40216384	27	8.5	32	71	22	126	31	27	20	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230