genome.fa.s19.2.7.7.80.10.50.1000.227.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  227  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67341951--67342000	14	3.5	14	78	5	64	30	32	20	18	1.96
67341846--67342015	58	2.9	58	76	1	169	28	27	22	21	1.99
67345163--67345231	31	2.2	31	84	0	93	44	11	20	23	1.83
67346043--67346068	7	3.7	7	100	0	52	76	0	0	23	0.78
67346116--67346142	11	2.5	11	100	0	54	25	0	14	59	1.36
67347167--67347216	18	2.7	18	78	3	55	40	46	2	12	1.52
67347323--67347398	9	8.4	9	88	0	116	23	13	23	39	1.90
67347327--67347397	36	2.0	36	97	0	133	22	14	25	38	1.92
67363041--67363102	29	2.2	27	81	16	72	22	11	8	58	1.59
67363609--67363697	44	2.0	44	95	0	160	33	10	15	40	1.81
67364454--67364492	20	1.9	21	94	5	71	69	0	5	25	1.09
67366698--67366773	28	2.7	29	80	10	86	35	27	1	35	1.66
67368464--67368625	46	3.6	46	94	2	267	27	22	16	33	1.95
67374728--67374760	17	2.0	17	94	5	59	87	0	12	0	0.53
67387283--67387325	17	2.5	17	84	0	50	58	9	2	30	1.42
67408398--67408463	31	2.1	31	83	10	82	39	4	15	40	1.67
67410622--67410679	30	1.9	30	89	0	89	46	10	12	31	1.74
67416629--67416680	17	3.2	16	81	13	61	25	0	3	71	1.03
67416628--67416683	8	6.8	8	78	13	60	25	0	3	71	1.02
67416626--67416690	26	2.6	25	80	11	78	27	0	3	69	1.03
67418063--67418180	29	4.1	28	72	10	78	38	16	3	42	1.65
67419984--67420013	13	2.3	13	94	0	51	50	6	13	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67421574--67421608	18	2.0	18	94	5	63	42	0	0	57	0.99
67421581--67421626	18	2.8	17	83	9	51	45	0	0	54	0.99
67421593--67421649	26	2.2	25	81	3	69	40	0	3	56	1.17
67421696--67421731	18	2.0	18	100	0	72	33	0	0	66	0.92
67421698--67421739	18	2.3	18	91	0	66	38	0	0	61	0.96
67421497--67421804	121	2.6	120	93	1	510	40	1	5	52	1.33
67421694--67421819	22	6.0	21	73	16	66	41	1	1	55	1.19
67421985--67422075	45	2.0	44	85	2	119	35	28	5	30	1.80
67422054--67422123	16	4.4	16	87	0	104	31	34	1	32	1.67
67424232--67424291	31	2.0	31	86	3	86	53	0	1	45	1.10
67426101--67426143	8	5.0	8	81	13	50	67	2	2	27	1.15
67431426--67431487	31	2.0	31	87	0	88	38	12	6	41	1.69
67439189--67439261	20	3.5	20	73	16	67	24	2	4	68	1.20
67456130--67456168	14	2.7	14	88	4	60	12	0	7	79	0.93
67456130--67456160	7	4.6	7	96	4	55	12	0	9	77	0.99
67457365--67457606	23	10.4	22	67	14	119	42	19	12	25	1.86
67457261--67457646	94	4.0	94	90	3	551	40	17	12	28	1.87
67457262--67457642	46	8.0	47	73	8	277	41	18	12	27	1.87
67458417--67458514	28	3.5	28	85	0	133	29	26	13	30	1.94
67465534--67465568	12	2.9	12	95	0	61	34	8	20	37	1.83
67468006--67468069	20	3.2	20	64	24	53	40	10	10	37	1.76
67468003--67468083	40	2.0	40	95	0	144	40	11	13	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67473620--67474090	130	3.6	130	85	6	641	52	19	8	20	1.71
67476651--67476692	13	3.2	13	86	6	57	50	0	2	47	1.14
67476659--67476685	14	1.9	14	100	0	54	44	0	3	51	1.19
67477884--67477913	11	2.6	12	94	5	53	70	0	0	30	0.88
67481295--67481356	30	2.1	29	85	8	81	41	8	1	48	1.42
67482954--67483003	15	3.0	17	77	14	59	48	0	6	46	1.27
67483909--67483959	22	2.3	21	80	6	57	27	49	0	23	1.51
67497235--67497268	18	1.9	18	94	5	61	32	0	5	61	1.20
67497412--67497437	12	2.2	12	100	0	52	76	0	0	23	0.78
67498406--67498440	12	2.8	12	95	4	61	14	5	2	77	1.07
67498741--67498796	25	2.3	25	84	3	69	69	8	1	19	1.24
67500226--67500325	50	2.0	50	98	0	191	29	18	9	44	1.80
67503554--67503594	22	1.9	22	85	5	57	29	0	7	63	1.21
67504039--67504112	37	1.9	39	86	8	107	70	0	1	28	0.96
67507842--67507977	60	2.2	63	87	5	183	39	11	17	31	1.85
67508518--67508572	22	2.6	22	80	13	62	67	1	1	29	1.11
67508518--67508575	13	4.0	15	78	13	59	65	1	1	31	1.13
67508732--67508767	17	2.1	17	89	0	54	41	8	2	47	1.48
67511812--67511837	11	2.4	11	100	0	52	53	0	7	38	1.30
67519522--67519573	26	2.0	25	88	3	77	67	1	0	30	1.02
67523254--67523301	24	2.0	24	100	0	96	45	12	12	29	1.78
67532010--67532058	23	2.1	24	85	11	66	42	10	20	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67534032--67534113	33	2.5	33	92	7	134	56	4	7	31	1.48
67540912--67541039	61	2.1	62	80	4	143	31	14	8	45	1.75
67545642--67545672	6	5.2	6	92	0	53	19	48	32	0	1.49
67546184--67546211	14	2.0	14	100	0	56	57	14	0	28	1.38
67551768--67551802	18	1.9	18	88	0	52	74	0	2	22	0.95
67552452--67552476	4	6.2	4	100	0	50	48	24	0	28	1.52
67556190--67556369	92	2.0	92	89	0	279	31	20	12	35	1.90
67557739--67557776	19	2.2	17	86	13	51	26	0	5	68	1.11
67562943--67563451	117	4.3	117	83	3	542	24	9	28	37	1.87
67565097--67565140	15	3.2	13	82	17	54	15	6	2	75	1.12
67566145--67566190	22	2.1	22	100	0	92	41	0	23	34	1.55
67573689--67573730	21	1.9	23	85	9	61	38	0	4	57	1.20
67573660--67573715	27	2.1	26	86	3	76	33	1	0	64	1.04
67582673--67582698	4	6.5	4	100	0	52	23	0	0	76	0.78
67593722--67593762	8	4.9	8	85	8	55	58	0	2	39	1.11
67593722--67593762	3	14.3	3	80	10	50	58	0	2	39	1.11
67595925--67595974	21	2.3	22	79	3	66	44	2	0	54	1.11
67595927--67595974	22	2.2	22	85	7	62	41	2	0	56	1.11
67600326--67600387	18	3.6	17	75	12	56	51	0	3	45	1.17
67600326--67600400	19	4.1	18	77	11	73	50	0	2	46	1.15
67610006--67610141	58	2.3	60	83	2	168	25	15	13	46	1.82
67610018--67610140	60	2.1	58	84	3	156	25	16	13	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67615243--67615351	38	2.8	38	85	1	137	25	12	10	51	1.71
67631693--67631719	3	9.0	3	100	0	54	66	0	0	33	0.92
67632159--67632187	15	1.9	15	100	0	58	6	6	3	82	0.93
67633186--67633215	15	2.0	15	93	0	51	43	16	20	20	1.88
67635179--67635238	30	2.0	30	96	0	111	30	15	26	28	1.96
67637296--67637410	40	3.0	39	72	13	103	48	15	1	33	1.56
67637711--67637765	23	2.3	23	81	9	58	52	5	1	40	1.35
67640623--67640714	9	9.7	9	69	19	53	61	1	4	32	1.22
67640624--67640714	20	4.7	20	72	10	64	61	1	4	32	1.23
67640625--67640697	28	2.5	29	78	10	87	61	0	4	34	1.15
67640627--67640660	17	2.0	17	88	0	50	58	0	0	41	0.98
67641174--67641734	186	3.0	186	92	0	908	44	13	15	26	1.83
67642475--67643969	333	4.5	333	80	5	1597	26	15	25	33	1.95
67645376--67645475	33	3.0	33	74	0	92	26	20	23	31	1.98
67653771--67653807	19	1.9	19	88	0	56	75	8	0	16	1.02
67658661--67658783	47	2.6	47	85	5	176	43	18	18	19	1.89
67668835--67668874	20	2.0	20	90	0	62	12	2	42	42	1.56
67678378--67678416	11	3.5	11	78	0	51	58	7	12	20	1.58
67678452--67678495	23	1.9	23	90	0	70	27	13	9	50	1.72
67700162--67700203	10	4.1	10	84	6	57	11	2	2	83	0.84
67707460--67707494	17	2.1	17	94	0	61	62	0	2	34	1.10
67708474--67708530	30	1.9	30	82	7	71	28	15	17	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67711083--67711291	105	2.0	105	89	0	319	36	11	21	31	1.88
67712163--67712233	34	2.1	34	100	0	142	21	19	11	47	1.80
67713843--67713895	24	2.3	23	80	6	63	56	7	9	26	1.57
67717500--67717583	20	4.1	21	80	11	77	48	13	3	34	1.59
67717518--67717584	19	3.3	20	84	14	75	44	16	2	35	1.63
67728874--67728938	31	2.1	31	82	0	76	46	7	7	38	1.61
67732278--67732344	19	3.4	19	84	14	73	35	2	16	44	1.63
67735956--67735999	23	2.0	21	83	12	54	25	11	6	56	1.58
67737603--67737670	31	2.1	34	91	8	115	47	11	19	22	1.81
67738504--67738709	104	2.0	103	87	2	297	31	21	11	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230