genome.fa.s19.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  165  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49195465--49195506	19	2.2	19	91	8	68	28	16	0	54	1.42
49199019--49199044	9	2.9	9	100	0	52	69	0	0	30	0.89
49209215--49209360	40	3.7	40	84	7	190	23	22	27	26	2.00
49209215--49209383	80	2.1	80	80	9	186	25	21	26	26	2.00
49216453--49216597	40	3.6	40	83	7	163	24	22	27	26	1.99
49227734--49227868	49	2.9	49	82	6	165	30	9	10	49	1.69
49229252--49229432	99	1.8	99	90	7	294	42	2	5	49	1.40
49229404--49229454	18	2.9	18	85	8	61	39	1	0	58	1.09
49229430--49229481	16	3.5	15	80	17	56	36	1	0	61	1.07
49229425--49229466	16	2.5	18	77	18	54	40	2	0	57	1.12
49229441--49229496	28	2.0	29	86	10	80	39	0	1	58	1.08
49229562--49229718	26	5.5	26	65	18	80	42	0	2	54	1.18
49229644--49229690	18	2.6	18	90	6	69	42	0	0	57	0.98
49229318--49229811	120	4.1	119	92	4	811	41	1	4	53	1.28
49229318--49229811	238	2.1	238	92	4	820	41	1	4	53	1.28
49229318--49229887	238	2.4	237	87	7	759	42	1	3	52	1.28
49229975--49230071	45	2.2	44	90	5	151	36	28	4	30	1.76
49230056--49230086	16	1.9	16	100	0	62	25	32	0	41	1.56
49240987--49241047	25	2.4	25	86	8	79	19	11	8	60	1.55
49241058--49241095	16	2.2	19	86	13	55	39	10	0	50	1.37
49245795--49245967	88	2.0	88	89	2	267	27	20	25	26	1.99
49246162--49246520	50	7.2	49	69	4	207	29	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49246109--49246520	100	4.1	101	87	2	537	30	19	22	27	1.98
49246109--49246520	200	2.1	200	88	1	612	30	19	22	27	1.98
49246532--49246694	44	3.8	43	78	7	179	28	20	22	28	1.99
49246532--49246726	85	2.3	86	81	9	211	29	20	21	28	1.98
49247580--49247627	22	2.1	23	84	3	62	8	16	4	70	1.27
49247571--49247647	38	2.1	38	83	7	97	10	14	3	71	1.27
49258175--49258211	10	3.9	9	89	10	56	32	0	2	64	1.07
49258785--49258820	18	1.9	19	94	5	65	66	0	0	33	0.92
49262897--49262979	40	2.1	40	100	0	166	24	19	18	38	1.93
49277541--49277565	13	1.9	13	100	0	50	32	16	8	44	1.76
49280959--49281025	29	2.6	25	78	19	66	47	8	2	40	1.50
49281228--49281257	5	6.0	5	100	0	60	20	0	0	80	0.72
49288883--49289126	40	6.1	40	88	1	355	31	20	27	19	1.97
49288985--49289090	20	5.3	20	64	8	63	29	21	30	18	1.97
49288901--49289127	80	2.8	80	95	0	400	31	21	28	18	1.97
49295282--49295498	40	5.4	40	89	0	272	34	17	26	22	1.95
49295282--49295523	120	2.0	120	86	0	340	34	16	26	22	1.95
49295299--49295523	40	5.6	40	87	2	238	34	16	27	22	1.95
49295282--49295523	80	3.0	80	80	2	279	34	16	26	22	1.95
49305218--49305274	10	5.6	10	78	12	62	63	1	1	33	1.15
49307057--49307105	10	4.8	10	85	11	55	63	4	0	32	1.13
49309994--49310049	25	2.2	24	76	17	60	60	1	1	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49310708--49310742	16	2.3	15	90	5	52	57	0	0	42	0.99
49314447--49314531	30	2.8	29	85	3	89	28	23	28	20	1.99
49314646--49314711	26	2.5	26	87	0	87	36	22	25	15	1.93
49314904--49315251	27	12.9	27	79	8	316	25	15	18	40	1.90
49314904--49315251	54	6.5	53	83	4	367	25	15	18	40	1.90
49314909--49315251	81	4.2	81	85	3	433	25	15	18	40	1.89
49321146--49321187	16	2.6	16	81	14	50	54	0	2	42	1.13
49321321--49321366	22	2.1	22	87	0	65	58	2	2	36	1.22
49324977--49325038	26	2.3	26	80	2	70	43	6	24	25	1.78
49327338--49327458	27	4.7	26	73	20	92	42	21	15	19	1.88
49327338--49327462	49	2.4	52	82	6	139	44	20	15	20	1.87
49327383--49327462	27	3.0	27	84	0	115	45	20	13	21	1.85
49336578--49336644	34	1.9	35	87	3	100	32	7	13	46	1.71
49341227--49341263	9	4.1	9	92	0	65	29	10	13	45	1.77
49341677--49341922	62	4.2	61	77	17	245	43	0	4	51	1.26
49341677--49341932	120	2.2	117	87	8	378	43	1	3	51	1.27
49350612--49350648	14	2.6	15	87	12	60	59	0	40	0	0.97
49351164--49351240	40	1.9	40	91	2	127	44	7	7	40	1.62
49351248--49351331	17	4.9	17	69	16	57	35	1	1	61	1.11
49351785--49352119	167	2.0	168	90	4	534	47	7	9	35	1.64
49352252--49352288	16	2.2	17	90	4	58	54	2	2	40	1.29
49354637--49354675	12	3.4	11	86	10	51	82	12	0	5	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49357447--49357500	5	10.8	5	92	7	92	81	0	0	18	0.69
49363566--49363768	51	4.0	52	72	12	181	25	17	27	30	1.97
49363577--49363761	101	1.8	102	88	3	284	25	17	25	30	1.97
49371456--49371490	16	2.2	16	89	0	52	60	5	0	34	1.21
49371836--49371884	19	2.6	18	83	6	53	32	14	2	51	1.54
49371968--49371992	13	1.9	13	100	0	50	52	0	0	48	1.00
49377135--49377196	26	2.4	26	86	0	79	37	9	12	40	1.77
49385687--49385721	3	11.7	3	100	0	70	68	31	0	0	0.90
49387036--49387073	19	2.0	19	85	10	51	21	42	0	36	1.53
49388895--49388943	19	2.6	18	84	9	71	42	28	4	24	1.73
49395694--49395992	50	5.8	50	88	3	400	21	29	23	26	1.99
49404478--49404514	10	3.8	10	92	3	58	32	0	2	64	1.07
49410493--49410545	17	3.1	16	86	5	61	83	1	13	1	0.82
49410494--49410545	11	5.0	10	77	15	52	84	1	11	1	0.78
49411234--49411273	10	3.8	10	84	12	53	35	0	2	62	1.09
49419475--49419721	28	8.2	33	84	9	159	29	23	23	23	1.99
49419509--49419715	28	7.2	28	87	7	267	30	23	23	22	1.99
49419510--49419718	84	2.4	88	86	8	309	31	23	22	22	1.99
49419819--49419892	26	2.8	27	83	6	98	33	25	22	17	1.96
49420096--49420182	27	3.3	27	77	7	79	25	13	22	37	1.91
49420108--49420550	81	5.5	80	77	8	373	20	17	19	42	1.89
49420107--49420550	54	8.2	52	80	5	325	20	17	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49420108--49420558	27	16.7	27	78	9	286	20	17	19	42	1.90
49430751--49430942	50	3.7	50	83	4	204	28	21	27	22	1.99
49454778--49454822	22	2.1	21	87	4	63	68	8	6	15	1.36
49455598--49455701	46	2.3	46	85	5	131	41	1	13	43	1.55
49456412--49456446	18	1.9	18	88	0	52	31	11	14	42	1.81
49458748--49458784	6	6.3	6	96	3	67	51	0	0	48	1.00
49468014--49468221	66	3.2	66	63	16	169	31	15	17	35	1.91
49467953--49468419	131	3.6	130	88	4	613	33	14	14	36	1.88
49468438--49469178	132	5.6	132	82	3	769	34	13	13	39	1.84
49468554--49469177	65	9.5	65	65	16	219	33	13	13	39	1.84
49468438--49469178	396	1.9	395	82	2	941	34	13	13	39	1.84
49469062--49469259	101	2.0	101	85	2	272	33	11	13	41	1.80
49468927--49469636	233	3.1	232	82	3	844	33	14	13	38	1.86
49469327--49469536	96	2.2	96	86	3	298	33	16	13	36	1.88
49469425--49470062	132	4.8	132	83	1	753	33	15	13	37	1.87
49469425--49470063	263	2.4	264	84	1	809	33	15	13	37	1.87
49469682--49470560	359	2.4	362	83	4	1087	34	14	13	37	1.86
49469952--49470159	95	2.2	96	89	2	312	33	15	14	36	1.88
49469814--49470283	227	2.1	228	86	1	647	33	14	14	37	1.87
49470040--49470393	132	2.7	132	87	1	487	33	13	15	37	1.86
49470040--49470392	65	5.4	64	66	14	191	33	13	15	37	1.86
49469887--49470524	233	2.8	222	78	6	568	34	14	14	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49470287--49470484	101	2.0	101	86	0	279	35	9	14	40	1.78
49482283--49482338	26	2.2	26	87	6	78	62	1	1	33	1.16
49485695--49485731	18	2.1	18	89	0	56	40	5	27	27	1.78
49488492--49488754	131	2.0	131	96	0	490	40	12	17	30	1.86
49489353--49489390	17	2.2	17	86	9	51	76	2	2	18	1.02
49489354--49489394	22	1.9	21	90	5	64	78	2	2	17	0.98
49491498--49491555	18	3.5	17	79	11	59	37	6	6	48	1.57
49491526--49491554	14	2.0	15	93	6	51	41	3	6	48	1.47
49494881--49494911	15	2.1	15	93	0	53	54	9	12	22	1.67
49496050--49496101	24	2.1	25	82	10	63	55	5	13	25	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230