genome.fa.s19.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  194  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58414723--58415054	90	3.7	89	86	1	385	39	17	18	23	1.92
58414764--58415113	45	7.8	45	86	2	409	38	17	20	23	1.93
58421655--58421783	52	2.5	52	87	6	174	27	27	16	27	1.97
58428865--58429042	52	3.5	52	86	6	215	28	29	15	26	1.96
58431616--58431665	25	2.0	25	92	0	82	44	34	6	16	1.72
58433085--58433156	36	2.0	36	97	0	135	38	18	16	26	1.91
58433373--58433412	21	1.9	21	89	0	62	30	20	25	25	1.99
58456177--58456218	6	7.0	6	94	0	57	33	9	7	50	1.62
58456177--58456218	12	3.5	12	90	0	66	33	9	7	50	1.62
58458390--58458429	14	2.9	14	84	0	53	32	7	17	42	1.77
58462162--58462260	23	4.3	23	88	0	153	31	27	20	21	1.98
58462162--58462260	46	2.2	46	92	0	171	31	27	20	21	1.98
58470841--58470893	6	8.7	6	91	2	79	62	0	20	16	1.33
58474544--58474568	6	4.2	6	100	0	50	20	0	32	48	1.50
58476148--58476203	24	2.3	24	78	9	60	46	0	1	51	1.11
58480174--58480217	6	7.3	6	84	0	52	20	2	68	9	1.28
58480649--58480680	6	5.3	6	96	0	55	18	0	68	12	1.20
58480740--58480770	6	5.2	6	92	0	53	19	0	64	16	1.29
58480850--58480896	12	3.9	12	80	0	58	8	2	68	21	1.27
58481013--58481048	18	2.0	18	88	0	54	22	2	63	11	1.39
58501709--58501747	17	2.3	17	95	0	69	46	2	0	51	1.14
58502052--58502083	15	2.2	15	94	5	57	37	3	6	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58501987--58502235	126	2.0	126	96	0	462	38	16	6	39	1.74
58509644--58509675	15	2.2	15	94	5	57	37	3	6	53	1.42
58509579--58509827	126	2.0	126	97	0	471	38	16	6	39	1.73
58509943--58510014	9	8.2	8	75	13	54	58	1	0	40	1.07
58509943--58510014	18	4.1	17	78	8	65	58	1	0	40	1.07
58509989--58510061	16	4.2	16	78	13	74	54	2	1	41	1.23
58509950--58510050	35	2.9	34	77	11	107	55	1	0	41	1.18
58514965--58514995	14	2.2	14	94	0	53	51	0	3	45	1.17
58515714--58515761	25	1.9	25	91	8	80	31	2	4	62	1.26
58517052--58517089	19	2.0	19	89	0	58	36	5	26	31	1.79
58518751--58518827	6	12.8	6	97	0	145	64	16	0	18	1.28
58518867--58518923	9	6.4	9	82	11	73	28	10	21	40	1.86
58526543--58526750	32	6.5	32	81	3	188	37	23	18	19	1.94
58526510--58526718	64	3.3	63	80	7	219	38	24	19	18	1.93
58526511--58526720	96	2.2	96	82	0	267	38	24	18	18	1.93
58526533--58526750	64	3.4	64	80	5	217	38	22	18	20	1.93
58526511--58526750	96	2.5	96	80	2	259	38	23	18	19	1.93
58526753--58526806	26	2.1	26	89	0	81	37	25	20	16	1.93
58526788--58526853	27	2.5	26	85	9	80	33	21	24	21	1.97
58527025--58527436	27	15.4	27	78	6	277	23	20	19	36	1.95
58527228--58527507	27	10.4	27	70	11	146	20	16	21	41	1.90
58527093--58527491	81	5.0	81	71	12	205	22	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58529411--58529445	12	2.9	12	91	0	52	65	14	11	8	1.46
58530579--58530638	9	6.4	9	84	7	84	38	28	8	25	1.84
58530576--58530633	20	3.0	20	87	7	84	41	29	6	22	1.80
58530646--58530706	17	3.4	17	70	12	59	52	14	1	31	1.52
58530641--58530711	37	1.9	37	97	0	133	47	16	2	32	1.61
58530644--58530728	37	2.3	37	88	8	120	49	15	3	31	1.61
58532579--58533043	234	2.0	234	96	0	851	32	24	11	32	1.90
58535564--58535745	43	4.3	43	77	5	163	21	30	29	17	1.96
58535564--58535745	85	2.1	85	80	5	197	21	30	29	17	1.96
58544548--58544635	25	3.6	25	80	10	83	32	18	25	23	1.97
58544922--58544947	5	5.2	5	100	0	52	42	19	0	38	1.51
58546814--58546886	29	2.6	28	82	2	83	31	23	19	26	1.98
58546840--58546923	28	3.0	28	87	0	114	34	17	13	34	1.89
58550975--58551039	31	2.0	33	85	11	91	43	9	6	41	1.61
58558181--58558408	90	2.5	91	83	3	298	24	15	25	34	1.94
58565466--58565688	40	5.6	40	83	6	213	24	20	27	27	1.99
58565466--58565690	80	2.8	79	82	7	242	24	20	28	27	1.99
58565541--58565723	79	2.3	80	81	1	217	25	20	27	26	1.99
58565466--58565723	119	2.2	120	80	4	281	25	20	27	26	1.99
58577407--58577539	43	3.1	43	81	3	160	37	26	18	17	1.93
58586627--58586661	6	5.8	6	93	0	61	51	11	0	37	1.38
58586625--58586699	2	37.0	2	72	2	51	46	8	5	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58586625--58586665	12	3.4	12	93	0	73	51	9	0	39	1.35
58586825--58586858	10	3.3	10	87	4	50	50	0	2	47	1.16
58590764--58591223	199	2.3	202	87	5	628	28	10	14	46	1.78
58611279--58611378	49	2.0	49	98	0	191	53	7	12	28	1.64
58612772--58612809	16	2.3	17	86	9	60	71	13	0	15	1.16
58616002--58616047	24	1.9	24	86	8	67	63	0	2	34	1.07
58617331--58617391	30	2.0	30	90	6	97	34	0	45	19	1.51
58617733--58617770	20	1.9	20	84	10	51	31	0	0	68	0.90
58618309--58618363	26	2.0	28	83	13	71	52	1	1	43	1.22
58621427--58621461	15	2.3	15	90	0	52	28	2	8	60	1.41
58622807--58622865	25	2.4	25	82	2	66	33	11	23	30	1.91
58627755--58627792	20	1.9	20	88	0	58	13	15	7	63	1.51
58628701--58628747	22	2.1	22	88	7	69	70	0	14	14	1.18
58630093--58630999	132	6.9	132	89	2	1349	28	18	24	28	1.98
58631024--58631485	50	9.2	50	71	3	320	29	20	24	25	1.99
58630994--58631483	100	4.9	100	93	1	786	28	20	24	25	1.99
58648586--58648724	43	3.5	43	71	22	156	33	25	19	21	1.97
58648470--58648761	76	3.8	76	93	1	449	31	26	20	22	1.98
58648630--58648757	33	3.6	33	71	22	114	35	26	20	17	1.95
58648736--58648790	27	2.0	28	96	3	103	29	29	21	20	1.98
58655019--58655062	23	1.9	22	82	17	54	36	25	0	38	1.56
58655202--58655282	26	3.2	25	64	22	60	33	29	14	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58655197--58655392	51	3.9	50	80	4	232	30	29	17	22	1.97
58655204--58655388	101	1.8	101	90	3	300	30	28	17	22	1.97
58657584--58657619	18	1.9	19	88	5	56	36	19	0	44	1.51
58660491--58660543	14	3.8	14	77	7	54	35	20	11	32	1.88
58660503--58660551	14	3.5	14	77	0	53	32	24	10	32	1.89
58671751--58671872	44	2.8	44	81	12	144	27	16	18	38	1.91
58679739--58679780	21	1.9	22	85	9	59	11	11	9	66	1.44
58685784--58687130	175	7.7	175	93	0	2268	28	20	19	31	1.97
58685840--58687224	44	31.6	45	68	14	527	28	20	19	31	1.97
58687268--58687560	87	3.4	87	89	0	406	26	25	19	27	1.99
58688702--58688748	21	2.2	21	88	0	67	23	34	12	29	1.92
58688847--58688872	7	3.7	7	100	0	52	11	11	0	76	1.01
58689644--58689682	8	4.8	8	90	3	60	0	12	0	87	0.55
58689687--58689756	26	2.7	26	80	12	72	14	0	5	80	0.89
58689687--58689756	25	2.8	24	83	12	86	14	0	5	80	0.89
58689702--58689755	16	3.4	16	80	16	67	11	0	3	85	0.73
58690988--58691039	19	2.7	20	82	5	63	46	11	17	25	1.81
58694412--58694451	16	2.5	17	84	11	50	5	5	35	55	1.44
58696374--58696423	21	2.4	21	96	3	93	62	4	0	34	1.14
58697281--58697325	10	4.6	10	91	5	74	22	0	2	75	0.91
58697281--58697325	19	2.3	20	92	3	74	22	0	2	75	0.91
58702480--58702619	42	3.4	41	80	3	147	35	15	20	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58704465--58704502	20	1.9	19	89	5	58	23	7	0	68	1.16
58704464--58704533	24	2.9	24	72	18	65	24	8	0	67	1.19
58704756--58704798	15	2.9	15	82	0	50	37	4	2	55	1.33
58716288--58716964	217	3.1	217	91	0	1061	28	20	23	26	1.99
58716302--58717330	89	11.8	84	67	13	358	28	20	24	27	1.99
58716302--58717335	44	23.8	42	70	14	387	28	20	24	27	1.99
58716820--58717108	132	2.2	133	88	1	438	29	20	25	25	1.99
58716603--58717342	349	2.1	351	89	2	1148	28	19	24	27	1.99
58718204--58718245	19	2.2	20	82	4	50	30	7	11	50	1.66
58719590--58719679	3	28.3	3	72	18	67	62	4	3	30	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230