genome.fa.s19.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  225  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66622353--66622378	6	4.3	6	100	0	52	15	0	30	53	1.42
66629472--66629499	6	4.7	6	100	0	56	17	0	28	53	1.44
66635705--66635735	15	2.1	15	100	0	62	22	32	6	38	1.80
66640015--66640045	15	2.1	15	93	0	53	25	29	6	38	1.81
66648883--66648939	29	1.9	30	85	3	80	31	14	17	36	1.89
66649113--66649192	29	2.7	29	84	5	88	45	15	7	32	1.74
66650056--66650080	13	1.9	13	100	0	50	48	16	0	36	1.46
66650525--66650558	16	2.1	16	88	0	50	17	2	0	79	0.86
66655238--66655268	3	10.3	3	100	0	62	64	0	0	35	0.94
66658673--66658712	20	2.0	20	85	0	53	57	0	5	37	1.21
66668600--66668641	21	1.9	23	85	9	61	52	2	0	45	1.13
66668631--66668702	24	3.0	24	82	11	85	58	1	0	40	1.07
66672048--66672553	251	2.0	247	83	8	625	48	14	11	25	1.77
66678334--66678592	91	2.8	91	98	0	491	47	3	2	47	1.32
66678911--66679011	44	2.4	42	76	11	100	32	27	4	34	1.78
66678909--66679018	45	2.6	44	78	8	122	32	27	5	34	1.80
66678999--66679050	16	3.2	16	91	0	77	34	34	0	30	1.58
66683876--66683921	20	2.4	19	82	13	58	60	4	0	34	1.16
66685034--66685063	7	4.3	7	100	0	60	26	30	13	30	1.94
66685874--66685961	31	2.9	29	81	6	95	51	14	11	22	1.74
66685888--66685961	29	2.5	31	86	4	98	51	14	10	22	1.74
66691792--66691869	29	2.5	33	84	16	103	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66699900--66699930	11	2.8	11	90	0	53	67	6	0	25	1.14
66700043--66700093	13	3.9	13	77	10	59	60	1	0	37	1.08
66718814--66718895	39	2.1	39	97	0	155	35	15	6	42	1.72
66719231--66719298	31	2.2	32	83	2	84	44	7	19	29	1.77
66722348--66722403	26	2.2	26	83	3	69	53	10	10	25	1.67
66728056--66728090	2	17.5	2	100	0	70	0	51	0	48	1.00
66728905--66728951	22	2.1	23	84	4	60	10	2	19	68	1.30
66748311--66748685	195	1.9	194	85	4	515	43	19	7	29	1.79
66752970--66753125	79	2.0	79	86	5	217	33	8	17	40	1.80
66763931--66764145	57	3.8	55	83	7	170	38	17	22	21	1.93
66763987--66764151	57	2.9	57	87	1	231	38	18	20	22	1.94
66771749--66771794	23	2.0	23	82	4	56	6	8	17	67	1.39
66796956--66796980	11	2.3	11	100	0	50	52	0	0	48	1.00
66799978--66800049	33	2.2	32	82	9	83	41	1	2	54	1.23
66800579--66800610	16	1.9	17	93	6	57	28	12	3	56	1.51
66801003--66801715	234	3.0	236	89	4	997	19	13	13	53	1.71
66803054--66803089	18	2.0	18	100	0	72	44	5	16	33	1.71
66805397--66805423	3	9.0	3	100	0	54	33	0	0	66	0.92
66807327--66807940	104	5.8	104	74	9	530	29	12	18	39	1.87
66807358--66808049	211	3.3	212	89	2	1018	29	12	18	39	1.87
66812491--66812528	7	5.0	8	87	12	62	86	0	0	13	0.56
66812491--66812528	15	2.5	15	100	0	76	86	0	0	13	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66829606--66829649	23	1.9	23	90	0	70	43	4	9	43	1.56
66837626--66837669	23	1.9	23	90	0	70	43	4	9	43	1.56
66839420--66839468	24	2.0	25	84	15	66	61	2	2	34	1.19
66840343--66840377	6	5.8	6	93	0	61	48	14	0	37	1.44
66846488--66846596	3	36.0	3	85	1	83	55	2	9	33	1.46
66849096--66849134	14	2.7	15	84	4	53	64	12	2	20	1.40
66855229--66855385	82	1.9	83	92	1	262	45	5	9	39	1.61
66858705--66858745	21	2.0	21	90	0	64	29	21	29	19	1.98
66864113--66864152	14	2.7	15	84	3	55	62	15	2	20	1.43
66865455--66865494	20	2.0	20	85	0	53	22	5	2	70	1.19
66865535--66865588	23	2.3	23	84	6	65	12	9	7	70	1.33
66865580--66865617	4	9.5	4	83	11	51	23	2	2	71	1.12
66866712--66866740	13	2.1	14	93	6	51	55	0	6	37	1.27
66866894--66866965	29	2.5	30	82	14	91	48	2	4	44	1.36
66869599--66869628	9	3.3	9	95	0	51	50	3	6	40	1.45
66870028--66870089	27	2.3	27	91	0	97	11	37	29	22	1.89
66870491--66870554	32	2.0	32	84	3	83	25	1	7	65	1.28
66871237--66871303	33	2.0	33	97	0	125	38	19	11	29	1.88
66878238--66878311	29	2.6	27	81	10	76	36	0	2	60	1.11
66883314--66883370	18	3.2	18	94	0	96	26	24	17	31	1.97
66888828--66888878	26	1.9	26	88	4	75	33	0	5	60	1.21
66892182--66892243	31	2.0	31	90	0	97	43	6	20	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66893846--66893903	27	2.1	27	84	6	73	24	1	1	72	1.03
66894193--66894217	12	2.1	12	100	0	50	24	32	16	28	1.96
66894953--66894985	3	11.0	3	93	0	57	30	0	3	66	1.06
66897028--66897124	33	2.8	35	72	20	89	44	3	1	51	1.24
66897630--66897654	7	3.6	7	100	0	50	12	0	0	88	0.53
66897641--66897715	20	3.8	18	71	20	60	33	2	0	64	1.08
66897671--66897737	25	2.8	22	77	16	71	35	2	0	61	1.12
66897661--66897766	49	2.1	48	84	8	133	32	2	0	64	1.15
66898340--66898368	3	9.7	3	100	0	58	34	0	0	65	0.93
66901173--66901224	22	2.2	24	83	6	72	9	23	0	67	1.20
66903117--66903298	82	2.2	83	84	3	242	45	10	8	34	1.70
66906283--66906323	21	2.0	21	90	0	64	19	29	21	29	1.98
66911180--66911295	61	1.9	60	85	1	160	40	15	19	24	1.90
66912469--66912507	19	2.1	19	85	0	51	30	10	5	53	1.56
66913668--66913731	19	3.3	19	77	4	56	54	6	1	37	1.35
66926812--66926845	17	2.0	17	88	11	52	50	14	11	23	1.76
66928491--66928515	5	5.0	5	100	0	50	80	0	0	20	0.72
66929753--66929801	19	2.7	19	79	17	59	59	0	2	38	1.09
66936612--66936683	30	2.4	30	83	2	90	33	12	15	38	1.85
66937209--66937239	15	2.1	15	100	0	62	25	6	19	48	1.72
66961954--66961987	4	8.5	4	93	0	59	26	2	23	47	1.66
66964777--66964819	21	2.0	23	86	9	63	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66974145--66974320	37	4.8	37	96	0	298	39	13	21	26	1.90
66974283--66974406	46	2.8	46	91	3	200	33	16	22	27	1.96
66981841--66982016	37	4.8	37	93	0	280	40	13	19	26	1.89
66981979--66982102	46	2.8	46	91	3	200	33	16	22	27	1.96
66985559--66985617	14	4.2	14	73	16	50	57	1	1	38	1.19
66985573--66985618	14	3.2	15	72	9	51	60	2	2	34	1.21
66985573--66985633	28	2.2	28	82	5	72	59	1	3	36	1.24
66989905--66989948	16	2.9	15	76	6	52	61	0	2	36	1.09
66995668--66995737	20	3.4	21	73	15	74	31	24	17	27	1.97
67000773--67000915	42	3.4	42	90	2	207	33	21	23	21	1.97
67000773--67000939	42	4.0	42	82	6	196	31	20	23	23	1.98
67001375--67001414	12	3.3	12	85	0	53	5	37	15	42	1.68
67001399--67001467	21	3.3	21	83	0	84	1	40	20	37	1.61
67006971--67007195	9	25.8	9	69	15	134	32	1	20	45	1.61
67006960--67007262	25	11.7	25	72	13	127	34	1	18	45	1.61
67006975--67007262	16	16.8	16	66	22	74	34	2	18	45	1.61
67006975--67007194	87	2.6	87	77	12	217	32	1	20	45	1.61
67007064--67007175	34	3.2	37	72	13	85	31	1	20	46	1.61
67007132--67007234	38	2.7	38	89	4	145	38	0	14	45	1.52
67007472--67007557	13	6.8	13	78	12	81	41	1	10	46	1.46
67008395--67008421	14	1.9	14	100	0	54	51	7	11	29	1.64
67009092--67009191	30	3.4	30	81	10	107	32	27	2	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67009648--67009676	15	2.0	15	93	6	51	65	0	34	0	0.93
67009777--67009818	12	3.4	12	81	12	50	76	0	21	2	0.90
67009772--67009831	11	5.8	10	79	11	50	78	0	18	3	0.89
67010365--67010402	20	1.9	20	88	0	58	36	13	7	42	1.73
67010522--67010567	17	2.6	17	83	12	58	30	17	6	45	1.73
67010628--67010702	34	2.2	33	81	6	87	33	13	14	38	1.85
67010750--67011074	18	17.4	19	69	18	143	31	11	12	44	1.77
67010750--67010846	17	5.5	17	76	7	77	26	14	12	46	1.80
67010897--67010935	17	2.3	17	86	0	51	38	10	7	43	1.67
67010848--67011008	19	8.8	19	72	15	83	36	11	11	40	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230