genome.fa.s19.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  40  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10819721--10819756	18	1.9	19	94	5	65	22	22	5	50	1.70
10828959--10829005	6	7.0	7	88	11	64	14	0	0	85	0.61
10828959--10829018	13	4.5	13	80	16	70	15	1	1	81	0.85
10828959--10829018	19	3.0	20	85	11	79	15	1	1	81	0.85
10828965--10829034	4	17.5	4	74	21	58	17	2	1	78	0.94
10835294--10835593	154	1.9	154	95	0	546	27	20	20	31	1.97
10838725--10838751	6	4.5	6	100	0	54	48	0	0	51	1.00
10840254--10840298	9	5.3	9	84	7	51	15	0	28	55	1.41
10841624--10841665	16	2.6	16	96	0	75	47	0	7	45	1.30
10841630--10841756	66	2.0	66	85	13	178	40	3	7	47	1.51
10841654--10841799	75	2.1	68	85	11	188	40	5	8	45	1.57
10841735--10841773	16	2.4	16	91	0	60	35	0	7	56	1.28
10841804--10841848	18	2.5	18	100	0	90	31	4	6	57	1.44
10841804--10841856	18	3.1	17	91	5	63	37	5	5	50	1.50
10842029--10842113	19	4.3	20	83	12	106	68	7	3	21	1.29
10842029--10842113	39	2.2	39	87	8	120	68	7	3	21	1.29
10842150--10842190	20	2.0	20	90	0	64	65	4	7	21	1.37
10842261--10842293	16	2.1	16	100	0	66	69	12	0	18	1.18
10844432--10844512	29	2.7	29	80	5	90	46	16	7	29	1.73
10845058--10845091	18	1.9	18	88	5	52	38	2	8	50	1.49
10846364--10846395	16	1.9	17	93	6	57	15	0	34	50	1.45
10849220--10849274	25	2.2	25	81	12	60	49	5	1	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10850912--10850943	15	2.1	15	94	0	55	68	9	6	15	1.36
10851266--10851327	30	2.1	30	96	0	115	24	3	14	58	1.51
10851675--10851706	16	2.0	16	100	0	64	50	12	18	18	1.78
10859641--10859790	43	3.5	41	71	11	113	22	18	22	36	1.95
10865889--10865928	8	5.2	8	82	11	57	12	0	25	62	1.30
10868415--10868441	11	2.5	11	100	0	54	22	7	18	51	1.70
10869849--10870056	91	2.3	91	91	0	326	45	3	3	47	1.37
10869971--10870031	28	2.2	28	85	5	81	45	0	3	50	1.17
10869889--10870075	47	4.1	43	71	18	121	45	2	3	48	1.32
10870083--10870391	66	5.2	57	66	20	184	41	2	4	50	1.38
10870072--10870484	120	3.4	120	97	0	756	42	2	5	49	1.37
10870197--10870248	15	3.6	15	80	12	56	44	0	1	53	1.11
10870317--10870368	15	3.6	15	80	12	56	44	0	1	53	1.11
10870437--10870478	15	2.9	15	82	10	52	50	0	0	50	1.00
10870632--10870722	45	2.0	44	85	2	119	35	27	5	31	1.80
10870701--10870752	16	3.2	16	86	0	68	26	28	3	40	1.74
10871107--10871151	18	2.5	18	86	10	65	44	0	2	53	1.13
10871130--10871183	28	2.0	27	85	10	74	44	0	1	53	1.11
10873081--10873152	37	1.9	37	97	0	135	41	15	4	38	1.66
10875327--10875365	14	2.8	14	84	7	53	56	2	2	38	1.27
10875653--10875705	3	17.7	3	76	7	54	60	3	5	30	1.37
10883787--10883863	35	2.2	37	86	9	115	29	3	14	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10885113--10885189	33	2.4	32	78	8	84	45	18	10	25	1.81
10888756--10889092	182	1.9	182	84	1	460	28	18	23	29	1.97
10895295--10895320	12	2.2	12	100	0	52	38	0	15	46	1.46
10896793--10896843	26	1.9	26	84	11	68	21	11	9	56	1.63
10898247--10898299	24	2.2	24	90	6	81	52	7	1	37	1.41
10905898--10905952	25	2.2	23	78	15	56	54	7	3	34	1.46
10907613--10907718	44	2.4	44	80	3	124	29	21	18	30	1.97
10910761--10910811	26	2.0	26	88	0	75	19	21	19	39	1.93
10911466--10911502	16	2.3	16	95	0	65	18	13	37	29	1.90
10915056--10915080	11	2.3	11	100	0	50	32	0	0	68	0.90
10921380--10921428	16	3.1	16	90	0	80	36	2	34	26	1.68
10921598--10921639	15	2.7	16	82	14	52	52	2	0	45	1.13
10921607--10921648	15	2.9	15	82	10	52	52	0	0	47	1.00
10921717--10921757	15	2.8	15	82	10	50	53	2	0	43	1.13
10921601--10921895	122	2.4	122	93	3	499	49	5	2	41	1.41
10921892--10922122	90	2.5	91	84	6	265	48	5	2	44	1.38
10921936--10922102	26	5.8	28	69	20	85	49	4	1	44	1.31
10921911--10922112	90	2.2	90	91	2	323	47	4	2	45	1.38
10921961--10922098	47	3.0	47	68	19	137	50	5	1	43	1.33
10932550--10932589	21	1.9	21	85	10	55	37	2	0	60	1.11
10933039--10933072	13	2.6	13	95	0	59	38	23	8	29	1.85
10933105--10933145	20	2.0	20	85	4	55	36	7	7	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10949033--10949087	20	2.8	19	86	8	74	27	0	0	72	0.85
10950453--10950492	20	2.0	20	95	0	71	47	40	2	10	1.50
10950798--10951075	27	10.4	27	79	5	242	18	18	21	41	1.90
10950798--10951075	53	5.2	54	83	2	256	18	18	21	41	1.90
10950832--10951073	53	4.5	54	84	2	272	17	17	23	41	1.90
10950850--10951075	107	2.1	107	82	1	274	17	18	22	42	1.89
10950798--10951071	80	3.4	79	77	4	262	18	18	22	41	1.91
10954629--10954908	27	10.4	27	75	6	196	17	19	19	43	1.89
10954629--10954908	54	5.2	53	80	4	249	17	19	19	43	1.89
10954629--10954908	81	3.5	81	79	4	280	17	19	19	43	1.89
10963182--10963215	17	2.0	17	88	0	50	32	8	2	55	1.45
10964634--10964735	27	3.8	27	92	2	161	30	10	26	32	1.90
10965559--10965644	41	2.1	41	91	0	136	20	17	29	32	1.96
10977265--10977313	23	2.1	23	96	0	89	32	2	4	61	1.26
10986381--10986517	40	3.4	40	92	0	229	28	14	27	29	1.95
10993092--10993116	12	2.1	12	100	0	50	24	36	24	16	1.94
10993277--10993387	9	12.4	9	89	1	161	35	25	9	30	1.87
10993387--10993496	37	3.0	37	87	0	166	49	13	3	33	1.60
10993720--10993778	7	8.3	7	84	3	82	54	13	15	16	1.72
10993781--10993807	13	2.1	13	100	0	54	7	14	33	44	1.73
10995126--10995171	23	2.0	23	87	4	67	39	2	0	58	1.10
10996727--10996794	28	2.4	29	85	7	95	55	5	16	22	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10996744--10996802	28	2.1	28	81	3	66	57	8	11	22	1.61
10997807--10997853	23	2.0	23	87	0	67	25	6	23	44	1.77
11000820--11000894	39	1.9	39	81	5	89	26	4	2	66	1.22
11000813--11000882	9	7.4	9	73	12	52	22	4	2	70	1.19
11007648--11007683	15	2.5	14	91	8	63	44	5	0	50	1.25
11015610--11015652	4	11.0	4	95	5	79	48	0	0	51	1.00
11025540--11025802	27	9.9	27	79	8	222	44	20	16	19	1.87
11025540--11025802	54	4.9	54	80	4	257	44	20	16	19	1.87
11025533--11025802	81	3.4	79	81	6	296	44	20	16	19	1.87
11031990--11032236	27	9.2	26	79	9	230	43	18	17	20	1.88
11031990--11032236	54	4.6	53	84	4	284	43	18	17	20	1.88
11031990--11032236	81	3.1	79	82	5	284	43	18	17	20	1.88
11032411--11032485	26	2.9	26	86	4	89	18	21	20	40	1.92
11032597--11032663	27	2.4	28	85	9	102	28	22	19	29	1.98
11032597--11032671	27	2.7	27	85	6	80	29	21	20	29	1.98
11033679--11033786	43	2.5	42	81	1	126	40	17	24	17	1.90
11033755--11033821	21	3.2	21	73	12	66	40	13	22	23	1.89
11039414--11039498	28	3.1	28	93	6	156	24	21	12	41	1.88
11039413--11039498	26	3.2	26	91	6	145	24	20	12	41	1.87
11044750--11044913	78	2.0	81	80	13	180	43	15	7	34	1.74
11059459--11059744	151	1.9	151	91	2	470	43	4	10	41	1.59
11061748--11061779	16	2.0	16	100	0	64	25	12	0	62	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11061997--11062193	51	3.9	50	78	6	191	29	26	17	25	1.98
11062000--11062220	101	2.2	102	78	5	243	28	27	16	27	1.97
11063132--11063159	13	2.2	13	100	0	56	42	7	17	32	1.77
11064981--11065062	42	2.0	42	83	9	105	30	24	13	31	1.93
11068058--11068258	51	4.0	51	75	10	196	29	28	16	24	1.97
11068067--11068250	101	1.8	102	86	3	273	30	27	17	24	1.97
11068062--11068281	101	2.2	103	76	8	236	29	29	15	25	1.96
11069079--11069134	28	2.0	28	96	0	103	35	19	14	30	1.91
11078067--11078202	40	3.5	40	78	6	143	41	20	17	19	1.90
11078242--11078395	41	3.8	41	92	0	254	19	20	27	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230