genome.fa.s19.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  171  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50940526--50940664	51	2.7	51	80	4	147	25	15	26	31	1.96
50966933--50966966	16	2.2	15	89	5	50	44	0	0	55	0.99
50967628--50967681	25	2.1	26	83	10	67	33	3	1	61	1.25
50973405--50973679	41	6.7	41	92	0	433	27	20	29	22	1.99
50978247--50978321	27	2.6	28	85	10	91	32	21	4	42	1.71
50978270--50978332	27	2.3	27	86	5	83	30	20	4	44	1.72
50979890--50980084	51	3.9	50	82	4	230	31	29	16	23	1.96
50979897--50980081	101	1.8	101	89	3	291	31	28	16	23	1.96
50985047--50985078	15	2.1	15	100	0	64	25	6	28	40	1.79
50985151--50985220	34	2.1	34	91	0	113	55	21	10	12	1.66
50986878--50986928	23	2.2	23	89	0	75	41	15	9	33	1.80
51002124--51002150	9	3.0	9	100	0	54	33	11	33	22	1.89
51006511--51006548	19	2.0	20	85	10	53	57	0	5	36	1.21
51006716--51006749	15	2.3	15	89	0	50	61	2	14	20	1.46
51008369--51008414	24	1.9	24	100	0	92	50	26	2	21	1.60
51008368--51008425	24	2.4	24	88	5	91	51	27	1	18	1.56
51013363--51013419	29	2.0	28	83	10	71	31	3	7	57	1.42
51016268--51016314	23	2.0	23	100	0	94	51	8	17	23	1.72
51016264--51016308	11	4.0	11	82	5	63	48	13	17	20	1.80
51016827--51016878	16	3.4	16	70	20	56	36	26	5	30	1.80
51016817--51016879	30	2.1	30	100	0	126	38	25	6	30	1.81
51017651--51017682	6	5.3	6	96	0	55	50	31	0	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51022883--51022932	3	16.7	3	95	0	91	34	2	0	64	1.05
51024077--51024105	3	9.7	3	100	0	58	31	34	0	34	1.58
51025030--51025107	39	2.0	39	100	0	156	35	0	12	51	1.40
51025034--51025117	39	2.2	39	93	0	141	35	0	10	53	1.36
51025492--51025535	23	2.0	23	86	13	65	38	0	0	61	0.96
51025607--51025648	20	2.2	20	86	4	59	52	4	2	40	1.35
51025796--51025947	45	3.3	45	82	2	196	40	7	3	48	1.51
51026970--51027022	27	1.9	28	81	11	65	20	11	13	54	1.69
51029475--51029563	27	3.3	27	90	0	133	33	22	19	24	1.97
51029475--51029576	27	3.8	26	85	6	116	34	20	20	24	1.97
51029569--51029676	23	4.6	23	89	3	135	21	4	24	50	1.68
51029848--51030082	32	7.4	32	77	0	184	21	19	22	37	1.94
51029845--51030054	64	3.3	64	78	1	233	20	18	23	37	1.94
51030074--51030138	22	3.0	21	69	13	51	20	16	15	47	1.82
51031677--51031747	34	2.1	33	81	2	79	29	5	15	49	1.67
51033737--51033916	96	1.9	96	82	2	227	35	13	18	32	1.91
51037030--51037630	299	2.0	299	97	0	1130	32	19	14	32	1.92
51039986--51040023	19	2.0	19	85	10	51	21	42	0	36	1.53
51043163--51043196	17	2.0	17	100	0	68	41	23	5	29	1.78
51054192--51054265	38	1.9	39	97	2	141	47	27	0	25	1.52
51054686--51054791	20	5.3	20	68	8	90	35	18	32	13	1.90
51054689--51054807	40	3.0	40	86	4	186	35	19	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51057374--51057438	22	3.0	22	77	4	60	43	18	21	16	1.88
51057430--51057757	32	10.3	32	86	1	408	39	21	18	20	1.92
51057763--51057816	26	2.1	26	85	0	72	35	25	22	16	1.95
51057804--51057867	27	2.4	27	85	12	80	31	23	25	20	1.98
51058034--51058165	27	4.9	27	87	0	194	25	21	18	34	1.96
51060237--51060292	30	1.9	28	85	7	76	42	0	0	57	0.99
51062635--51062979	51	6.8	50	80	4	343	29	25	14	30	1.95
51062636--51062979	102	3.4	102	87	2	433	29	25	14	29	1.95
51069014--51069075	16	3.9	16	72	8	63	35	8	11	45	1.70
51085546--51085620	27	2.8	26	72	25	66	65	10	5	18	1.42
51092752--51092839	44	2.0	44	95	0	158	32	36	4	26	1.77
51093626--51093887	143	1.8	143	82	3	339	22	20	23	33	1.97
51095460--51095546	3	30.0	3	75	19	69	68	1	4	25	1.15
51095463--51095550	35	2.5	35	81	10	90	69	1	4	25	1.14
51095514--51095561	25	1.9	25	82	0	60	72	0	4	22	1.01
51095719--51095762	22	2.0	23	86	4	63	31	2	61	4	1.28
51105306--51105647	51	6.7	50	80	6	361	28	15	25	30	1.96
51105306--51105644	102	3.3	101	88	2	450	28	15	25	30	1.96
51105301--51105647	153	2.3	152	82	3	412	29	14	25	30	1.95
51117866--51117897	15	2.1	15	100	0	64	46	12	31	9	1.73
51119313--51119372	25	2.4	25	83	10	70	23	6	0	70	1.11
51119326--51119378	6	8.5	6	78	15	54	22	3	0	73	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51119327--51119378	19	2.7	20	80	17	56	23	3	0	73	1.00
51130927--51130969	19	2.1	20	83	12	52	44	6	4	44	1.52
51134766--51134814	26	1.9	25	83	4	62	57	2	6	34	1.35
51139309--51139480	40	4.3	40	88	2	213	26	27	20	25	1.99
51139311--51139533	40	5.6	39	82	5	207	26	27	21	25	1.99
51139465--51139542	40	1.9	41	82	10	97	26	28	20	24	1.99
51158155--51158251	48	2.0	48	100	0	194	22	12	22	42	1.87
51159998--51160041	17	2.4	19	85	7	56	40	4	4	50	1.43
51161196--51161223	6	4.7	6	100	0	56	17	17	17	46	1.85
51163176--51163209	17	1.9	17	88	5	50	67	2	0	29	1.05
51163202--51163243	22	1.9	22	85	9	59	50	9	0	40	1.35
51163555--51163602	24	2.0	24	91	0	78	52	10	4	33	1.55
51165521--51165568	24	2.0	24	91	0	78	52	10	4	33	1.55
51168163--51168215	24	2.3	23	83	3	61	56	1	3	37	1.28
51174280--51174319	19	2.0	20	95	4	73	45	7	10	37	1.66
51176612--51176658	21	2.2	22	85	7	62	36	0	2	61	1.08
51176611--51176675	11	5.9	11	72	13	62	35	1	1	61	1.15
51177993--51178021	11	2.5	12	88	11	51	20	0	0	79	0.74
51184501--51184996	50	9.7	50	79	6	442	28	19	27	24	1.99
51184597--51184892	156	1.9	156	86	0	421	27	19	29	24	1.98
51184501--51184943	206	2.2	206	92	0	726	27	19	27	24	1.99
51187252--51187337	30	2.9	30	83	0	109	32	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51192683--51192708	11	2.4	11	100	0	52	80	0	0	19	0.71
51193633--51193665	16	2.1	16	88	11	50	54	9	12	24	1.66
51200795--51200826	17	1.9	16	93	6	55	21	6	3	68	1.26
51203672--51203859	50	3.6	50	79	4	178	28	20	26	24	1.99
51211507--51211607	35	2.9	35	78	0	112	22	17	15	43	1.87
51212828--51212860	11	3.1	11	91	4	50	66	0	24	9	1.20
51212969--51213153	101	1.8	102	88	3	284	23	16	28	31	1.96
51212969--51213151	51	3.6	50	78	6	172	23	16	27	31	1.96
51217391--51217430	21	1.9	21	85	10	55	52	22	7	17	1.69
51221368--51221397	3	10.0	3	92	0	51	63	0	3	33	1.11
51224322--51224364	22	2.0	22	90	0	68	46	0	0	53	1.00
51229584--51229743	57	2.8	57	88	0	248	25	31	13	28	1.94
51234617--51234814	99	2.0	100	92	1	335	46	10	12	30	1.75
51234855--51234917	31	2.0	31	87	6	92	33	11	11	44	1.75
51240288--51240524	76	3.1	76	93	2	384	54	7	9	28	1.59
51240288--51240524	78	3.1	77	93	3	388	54	7	9	28	1.59
51240709--51240772	33	1.9	33	96	0	119	23	15	46	14	1.82
51240709--51240793	33	2.6	33	88	0	107	24	12	47	15	1.81
51240947--51240985	12	3.2	12	81	0	51	5	43	23	28	1.75
51243156--51243212	30	1.9	29	89	3	87	63	8	0	28	1.24
51243237--51243303	24	2.6	25	77	13	75	0	28	0	71	0.86
51245701--51245752	24	2.2	24	100	0	104	32	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51245950--51246109	29	5.4	29	75	9	137	23	22	26	26	2.00
51246129--51246205	36	2.1	36	85	0	100	37	19	12	29	1.89
51247499--51247574	30	2.6	29	79	6	91	44	18	9	27	1.80
51247742--51247812	31	2.3	31	78	9	81	45	19	11	23	1.83
51247543--51248055	184	2.8	184	90	2	757	43	21	8	27	1.81
51247654--51247945	91	3.2	91	68	7	266	42	21	9	27	1.83
51248063--51248105	21	2.1	21	86	4	61	48	11	0	39	1.40
51262433--51262463	16	1.9	16	93	0	53	41	12	12	32	1.81
51266356--51266560	101	2.0	102	95	0	367	21	18	14	45	1.84
51270307--51270478	43	4.0	43	69	14	129	25	18	25	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230