genome.fa.s19.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  207  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61721384--61721413	6	5.0	6	100	0	60	16	0	50	33	1.46
61727407--61727514	42	2.6	42	86	0	153	28	28	17	25	1.97
61730116--61730172	26	2.2	26	81	6	62	21	19	24	35	1.96
61730135--61730189	26	2.2	26	93	3	94	14	21	21	41	1.89
61736408--61736440	15	2.2	15	94	0	57	75	0	24	0	0.80
61743715--61743758	17	2.5	17	88	3	61	54	4	2	38	1.33
61743766--61743823	19	3.0	19	73	9	55	63	0	1	34	1.04
61744015--61744071	20	2.6	22	83	10	64	40	0	0	59	0.97
61744039--61744082	15	2.9	15	79	3	52	34	0	0	65	0.93
61744067--61744100	17	2.0	17	88	0	50	35	0	0	64	0.94
61744468--61744501	10	3.6	10	92	7	54	35	0	0	64	0.94
61745359--61745424	16	4.0	17	73	11	57	57	0	1	40	1.08
61747820--61747846	10	2.7	10	100	0	54	59	0	0	40	0.98
61748307--61748474	43	3.9	43	85	4	214	31	32	16	19	1.94
61748670--61748728	18	3.3	18	63	13	50	40	10	6	42	1.65
61753040--61753270	81	2.9	82	85	5	326	31	32	16	19	1.94
61753040--61753270	41	5.7	41	87	2	315	31	32	16	19	1.94
61753326--61753357	16	2.0	16	100	0	64	43	25	18	12	1.85
61761566--61761595	15	2.0	15	93	0	51	63	0	3	33	1.11
61763331--61763635	87	3.5	87	80	6	391	26	25	21	26	1.99
61763330--61763713	44	8.8	44	69	7	165	26	26	20	27	1.99
61763297--61763627	175	1.9	175	90	1	529	25	26	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61763606--61763818	44	4.8	44	85	2	268	28	24	16	30	1.96
61773362--61773421	27	2.2	28	82	8	79	46	8	0	45	1.33
61774109--61774164	28	2.0	28	82	0	67	51	1	3	42	1.29
61774148--61774210	19	3.4	19	82	4	92	49	0	11	39	1.38
61774665--61774700	16	2.2	16	90	0	54	36	8	27	27	1.86
61774864--61775000	58	2.4	58	82	4	179	54	2	1	42	1.21
61776933--61776993	31	2.0	31	86	0	86	34	3	13	49	1.58
61776950--61777032	31	2.7	31	86	3	105	25	4	18	51	1.65
61777272--61778605	464	3.0	434	85	9	1370	41	11	13	32	1.81
61777990--61778043	20	2.7	20	80	11	65	70	1	3	24	1.13
61778317--61778379	27	2.3	27	97	0	117	15	22	34	26	1.94
61779394--61779484	45	2.0	44	91	6	148	54	4	7	32	1.49
61780135--61780363	90	2.5	91	92	4	385	25	3	11	58	1.50
61780135--61780413	90	3.1	90	88	5	318	26	3	11	58	1.50
61780639--61780685	20	2.3	20	75	13	51	65	8	2	23	1.31
61782012--61782327	89	3.6	89	74	9	245	56	13	4	25	1.56
61785377--61785434	30	2.0	29	82	3	71	44	8	20	25	1.80
61800933--61800961	14	2.0	15	93	6	51	62	0	6	31	1.22
61801357--61801399	20	2.2	20	91	0	68	11	27	20	39	1.88
61801483--61801515	3	11.3	3	87	6	50	69	0	30	0	0.88
61801785--61801821	16	2.3	16	100	0	74	35	0	5	59	1.20
61803806--61803875	11	6.6	11	75	18	60	41	4	0	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61803787--61803937	41	3.7	41	80	10	175	35	1	1	61	1.16
61803817--61803878	29	2.1	29	85	8	81	38	3	0	58	1.15
61803797--61803910	38	2.9	38	90	6	167	38	2	0	57	1.18
61803885--61803910	11	2.4	11	100	0	52	38	0	0	61	0.96
61804327--61804428	33	3.1	33	82	0	123	10	46	15	27	1.79
61805820--61805904	36	2.4	35	88	9	120	37	3	7	51	1.46
61805968--61806013	19	2.5	18	82	3	56	36	0	4	58	1.18
61806126--61806180	21	2.6	21	85	8	85	27	38	9	25	1.86
61813140--61813199	30	1.9	32	86	6	88	28	15	6	50	1.69
61822999--61823048	21	2.3	22	75	21	52	10	22	2	66	1.32
61823841--61823890	20	2.4	21	93	6	93	62	24	0	14	1.32
61830322--61830667	52	6.9	52	85	8	457	34	14	21	28	1.93
61830322--61830678	97	3.6	97	89	3	491	34	14	22	28	1.93
61830643--61830861	37	6.0	37	94	1	363	37	16	21	24	1.93
61833547--61833614	31	2.2	31	89	0	109	36	16	5	41	1.72
61846104--61846158	27	2.0	29	85	7	78	30	16	7	45	1.74
61848427--61848473	22	2.0	22	84	15	60	59	4	0	36	1.17
61855826--61855877	23	2.3	22	75	21	54	9	23	1	65	1.32
61856680--61856730	21	2.4	21	100	0	102	62	23	0	13	1.31
61863354--61863705	52	7.0	52	85	8	467	34	14	22	28	1.93
61863406--61863712	98	3.1	98	91	1	429	34	14	22	28	1.93
61863340--61863705	150	2.5	144	92	5	579	34	14	22	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61863676--61863895	37	6.0	37	94	1	372	37	16	21	24	1.93
61866612--61866679	31	2.2	31	89	0	109	36	16	5	41	1.72
61867684--61867751	31	2.2	31	91	0	118	36	14	5	42	1.70
61869956--61870013	26	2.2	27	85	11	77	67	1	3	27	1.17
61879871--61879902	3	10.7	3	100	0	64	34	31	0	34	1.58
61880728--61880799	31	2.3	32	83	9	94	61	6	9	22	1.51
61883943--61884040	19	4.8	19	80	13	106	37	7	15	39	1.75
61883944--61884006	21	3.1	21	90	4	94	39	7	12	39	1.73
61884006--61884050	23	2.0	23	86	4	65	33	4	15	46	1.66
61884678--61884736	22	2.5	22	84	13	66	28	1	3	66	1.18
61884820--61884857	15	2.4	17	86	8	53	15	7	0	76	1.01
61888273--61888318	2	23.0	2	100	0	92	50	0	50	0	1.00
61892489--61892556	32	2.1	34	91	5	113	33	5	11	48	1.64
61893308--61893373	35	1.9	34	84	3	87	30	18	25	25	1.98
61901067--61901412	27	12.9	27	83	2	374	41	21	17	19	1.90
61901381--61901517	72	1.9	71	82	7	170	37	16	19	26	1.92
61901470--61901544	26	2.8	26	86	6	89	37	17	21	24	1.94
61901363--61901545	98	1.9	99	92	1	314	36	16	20	26	1.94
61905362--61905558	107	1.8	107	88	0	304	29	15	27	27	1.96
61906133--61906161	12	2.4	12	100	0	58	24	0	13	62	1.32
61913084--61913335	123	2.1	122	87	4	366	38	26	19	15	1.92
61913855--61913890	3	12.0	3	100	0	72	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61914556--61914590	16	2.2	16	100	0	70	71	0	5	22	1.07
61916981--61917055	26	2.9	26	83	0	87	40	22	17	20	1.92
61918641--61918673	17	1.9	17	93	0	57	48	15	18	18	1.81
61920849--61921042	50	3.9	50	88	0	298	25	22	32	19	1.97
61924328--61924354	3	9.0	3	100	0	54	33	33	0	33	1.58
61926741--61926788	18	2.7	17	78	9	60	39	16	2	41	1.60
61932007--61932076	34	2.0	36	86	8	99	5	28	8	57	1.52
61932729--61932970	27	9.0	27	80	0	250	43	18	16	21	1.87
61932731--61932984	81	3.1	79	84	5	294	42	18	16	22	1.89
61933345--61933432	28	3.1	28	88	1	113	25	21	22	30	1.99
61933349--61933466	28	4.0	28	80	9	85	25	22	22	29	1.99
61933467--61933543	40	1.9	40	91	0	127	24	11	31	32	1.91
61935865--61935898	16	2.0	16	88	11	50	23	11	0	64	1.26
61935972--61936054	3	27.0	3	80	4	94	30	2	6	61	1.33
61936351--61936422	4	18.0	4	100	0	144	50	25	0	25	1.50
61936471--61936545	29	2.6	28	81	6	87	33	8	1	57	1.36
61941008--61941051	20	2.2	20	83	4	52	43	4	22	29	1.73
61944090--61944228	71	2.0	71	98	0	269	34	23	14	28	1.93
61944359--61944585	54	4.2	54	80	6	253	41	18	16	23	1.90
61944356--61944571	27	8.0	27	77	6	188	42	18	16	22	1.89
61944764--61944839	26	2.9	26	90	0	107	15	19	23	40	1.90
61944795--61944845	26	2.0	26	84	0	66	21	17	19	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61944927--61945019	27	3.4	28	75	8	75	26	19	20	33	1.96
61944926--61945015	28	3.2	28	74	4	83	26	20	20	33	1.97
61960566--61960600	18	2.0	18	88	5	54	14	28	45	11	1.79
61962521--61962567	24	2.0	23	83	4	58	42	10	10	36	1.74
61963944--61963995	27	1.9	27	84	7	70	73	1	13	11	1.19
61966627--61966652	6	4.3	6	100	0	52	15	0	0	84	0.62
61967469--61967601	66	2.0	66	94	0	230	40	20	6	32	1.78
61970161--61970207	19	2.5	20	82	10	62	19	0	2	78	0.85
61970176--61970212	19	1.9	19	94	0	65	27	0	2	70	1.01
61977641--61977672	16	2.0	16	93	0	55	12	34	31	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230