genome.fa.s19.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  169  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50243832--50243858	12	2.2	12	100	0	54	22	0	0	77	0.76
50247792--50247824	10	3.3	10	95	0	57	48	0	0	51	1.00
50249104--50249143	19	2.1	18	86	13	53	67	2	12	17	1.33
50249984--50250014	16	1.9	16	93	0	53	41	0	6	51	1.27
50258006--50258065	20	3.0	20	80	0	66	45	10	8	36	1.68
50260459--50260507	11	4.5	12	76	19	54	65	0	0	34	0.93
50260452--50260498	20	2.4	19	82	6	67	63	0	0	36	0.94
50260459--50260507	12	4.5	11	78	21	59	65	0	0	34	0.93
50261522--50261596	31	2.4	31	78	12	82	65	2	5	26	1.27
50261779--50261855	19	4.2	18	80	11	75	37	2	2	57	1.27
50261787--50261862	9	8.1	9	73	7	53	34	2	1	61	1.18
50261819--50261892	29	2.6	29	78	10	80	29	5	1	63	1.25
50262034--50262109	38	2.1	38	85	7	104	22	2	7	67	1.30
50264933--50264968	18	1.9	19	88	5	56	5	16	2	75	1.12
50265895--50265949	27	2.1	26	86	10	76	54	0	0	45	0.99
50265895--50265946	26	2.0	26	85	7	70	55	0	0	44	0.99
50272653--50272677	5	5.0	5	100	0	50	20	0	0	80	0.72
50283815--50283880	33	2.0	34	93	3	116	22	16	9	51	1.72
50284025--50284054	15	2.0	15	100	0	60	26	0	20	53	1.46
50284382--50284485	10	10.6	10	74	15	69	59	1	2	35	1.23
50284388--50284485	29	3.3	29	77	17	80	58	1	3	37	1.21
50286114--50286160	21	2.2	22	77	11	53	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50287983--50288078	46	2.1	46	94	0	165	37	22	16	22	1.94
50289921--50289963	5	8.2	5	80	10	50	25	2	0	72	0.97
50289921--50289968	10	4.7	10	85	12	62	27	2	0	70	0.98
50290135--50290208	27	3.2	20	69	30	58	21	2	10	64	1.37
50290120--50290224	50	2.1	50	98	0	201	21	4	11	61	1.47
50295437--50295463	13	2.1	13	100	0	54	48	7	14	29	1.71
50300184--50300226	12	3.8	11	81	12	52	44	2	16	37	1.60
50300182--50300226	22	2.0	22	87	8	65	42	2	15	40	1.59
50300191--50300233	21	2.0	21	86	8	61	44	6	11	37	1.68
50304675--50304818	25	5.8	25	80	3	148	25	24	25	25	2.00
50304675--50304818	50	2.9	50	83	2	173	25	24	25	25	2.00
50315763--50315897	51	2.7	51	77	3	139	31	21	17	29	1.96
50320256--50320339	30	2.8	30	81	0	105	22	29	28	19	1.98
50325435--50325657	40	5.6	40	84	3	218	24	20	28	26	1.99
50325510--50325692	79	2.3	80	80	1	199	25	20	28	25	1.99
50328962--50328991	12	2.5	12	94	0	51	6	30	40	23	1.80
50352892--50352941	11	4.5	11	75	9	57	10	2	48	40	1.48
50352870--50352942	22	3.3	22	72	11	60	12	4	49	34	1.59
50364288--50364510	40	5.6	40	86	3	236	24	21	27	26	1.99
50364363--50364545	79	2.3	80	82	1	226	25	20	27	25	1.99
50372182--50372441	80	3.3	79	79	5	240	25	20	27	26	1.99
50372182--50372404	40	5.6	40	85	3	227	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50372257--50372439	79	2.3	80	81	1	217	25	20	27	26	1.99
50372985--50373016	17	1.9	17	93	6	57	34	6	6	53	1.51
50375399--50375582	40	4.6	40	84	6	239	25	23	26	24	2.00
50375399--50375582	80	2.3	80	88	3	264	25	23	26	24	2.00
50375845--50375888	22	2.0	22	82	8	54	31	11	13	43	1.80
50389126--50389255	70	1.9	69	88	4	199	50	6	23	20	1.72
50398507--50398540	17	2.0	18	88	11	54	47	0	11	41	1.40
50401581--50401624	18	2.4	18	78	10	54	45	2	11	40	1.53
50402398--50402477	28	2.9	28	75	7	83	38	21	15	25	1.92
50405370--50405445	37	2.1	36	83	11	93	43	2	2	51	1.29
50420411--50420440	12	2.5	12	94	0	51	23	40	30	6	1.80
50424555--50424586	15	2.1	15	100	0	64	18	6	6	68	1.32
50426238--50426308	17	3.8	18	72	22	58	36	2	4	56	1.34
50440296--50440373	39	2.0	39	97	0	147	38	23	14	24	1.91
50441927--50441951	13	1.9	13	100	0	50	32	16	16	36	1.90
50443562--50444020	47	9.6	47	90	2	684	32	8	29	28	1.87
50443562--50444020	192	2.4	192	94	1	798	32	8	29	28	1.87
50448209--50448251	23	1.9	22	85	4	59	74	6	13	4	1.19
50448208--50448257	23	2.2	21	80	13	55	74	8	14	4	1.20
50462604--50462750	41	3.6	41	87	0	204	19	28	16	35	1.94
50469431--50469473	10	4.2	10	80	14	52	79	2	0	18	0.85
50475023--50475093	36	2.0	36	82	0	88	29	9	9	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50475072--50475202	36	3.7	35	80	6	138	28	13	13	44	1.82
50475896--50475948	20	2.7	20	72	0	61	11	5	20	62	1.49
50478046--50478093	21	2.2	20	79	13	51	31	14	16	37	1.89
50478072--50478188	48	2.4	48	81	0	144	23	13	22	41	1.89
50479801--50479827	11	2.5	11	100	0	54	14	22	22	40	1.90
50485949--50486004	29	2.0	28	89	3	85	33	28	14	23	1.94
50487635--50487659	13	1.9	13	100	0	50	52	0	0	48	1.00
50492075--50492129	27	2.0	27	82	6	67	27	29	0	43	1.55
50492659--50492688	15	1.9	16	93	6	53	46	13	6	33	1.69
50495700--50495800	43	2.3	43	88	3	141	32	1	11	53	1.49
50495738--50495859	43	2.8	44	80	8	110	35	1	15	47	1.56
50496229--50496274	18	2.6	18	80	16	51	58	2	6	32	1.36
50496209--50496268	20	3.0	20	75	22	63	55	5	8	31	1.51
50496317--50496373	19	2.9	20	70	15	55	64	1	7	26	1.28
50496357--50496406	26	1.9	26	95	0	91	54	6	4	36	1.44
50496357--50496420	26	2.5	26	87	5	85	53	6	4	35	1.47
50496581--50496667	28	3.1	28	81	6	106	39	1	0	59	1.05
50496616--50496678	19	3.4	19	78	8	67	36	0	1	61	1.05
50496599--50496693	37	2.6	37	80	11	90	36	0	1	62	1.03
50496596--50496692	28	3.6	26	81	14	90	37	0	1	61	1.03
50515728--50515998	42	6.4	42	85	6	325	32	21	20	26	1.97
50515728--50515998	127	2.1	126	85	6	359	32	21	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50515735--50515955	85	2.6	85	89	4	329	34	20	19	24	1.96
50515728--50515996	85	3.2	83	83	7	319	32	21	20	26	1.97
50516433--50516498	21	3.1	21	80	0	78	4	40	18	36	1.71
50521789--50522262	9	55.9	9	68	15	183	30	4	19	45	1.70
50521838--50521903	25	2.6	25	80	0	78	34	3	18	43	1.65
50521858--50522024	16	10.8	16	69	18	95	29	5	17	46	1.72
50521861--50522024	49	3.5	49	78	13	209	30	5	17	46	1.71
50521859--50522053	90	2.2	90	96	0	354	29	5	18	46	1.72
50522013--50522085	34	2.1	34	97	0	137	27	6	21	43	1.78
50522000--50522059	25	2.4	25	77	0	66	28	5	23	43	1.74
50522071--50522143	37	2.0	37	100	0	146	30	2	16	50	1.59
50523461--50523490	14	2.1	14	100	0	60	53	6	13	26	1.64
50523692--50523793	54	1.9	54	90	6	163	50	19	2	27	1.62
50523971--50524017	22	2.1	22	92	0	76	40	23	10	25	1.87
50525005--50525073	7	9.3	7	74	12	57	43	33	2	20	1.67
50525005--50525073	15	4.6	14	69	13	57	43	33	2	20	1.67
50525134--50525190	22	2.7	21	86	2	78	42	38	1	17	1.60
50525181--50525236	23	2.4	23	93	0	94	42	41	0	16	1.48
50525136--50525256	7	16.7	7	70	14	68	42	38	0	18	1.56
50525470--50525988	114	4.6	115	73	8	285	26	21	18	32	1.97
50525470--50526133	113	5.9	112	74	5	464	26	21	19	32	1.97
50531560--50531596	18	2.1	18	100	0	74	27	18	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50533028--50533061	12	2.8	12	86	0	50	17	29	52	0	1.45
50539740--50539795	28	2.0	28	100	0	112	39	14	10	35	1.81
50546419--50546466	25	1.9	25	87	8	71	33	4	4	58	1.36
50548659--50549073	27	15.4	27	79	8	260	43	21	15	19	1.87
50548676--50549141	81	5.8	81	78	6	333	43	20	15	20	1.88
50548892--50549146	27	9.4	27	81	6	234	43	20	15	20	1.88
50548659--50549146	54	9.0	54	77	7	275	43	21	15	19	1.87
50549187--50549249	24	2.6	24	87	0	81	23	7	23	44	1.80
50549313--50549377	27	2.4	27	83	14	82	20	24	23	32	1.98
50549331--50549383	27	2.0	27	81	7	63	22	26	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230