genome.fa.s19.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  173  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51617268--51617332	15	4.4	16	73	21	52	49	1	6	43	1.37
51619417--51619493	28	2.8	25	75	12	73	59	2	2	35	1.25
51622346--51622381	15	2.5	15	90	4	56	27	0	5	66	1.13
51623324--51623390	32	2.1	32	100	0	134	25	11	11	50	1.73
51629215--51629254	20	2.0	20	85	5	53	32	2	0	65	1.06
51633617--51633686	24	2.9	24	71	0	77	47	4	1	47	1.31
51657700--51657732	17	1.9	17	88	11	50	0	9	6	84	0.76
51659089--51659115	13	2.1	13	100	0	54	33	7	22	37	1.82
51664091--51664128	20	1.9	20	89	10	60	39	13	15	31	1.86
51666943--51667036	47	1.9	49	85	6	129	53	5	3	38	1.40
51672992--51673025	17	2.0	17	94	0	59	70	8	11	8	1.34
51673303--51673378	38	2.0	38	92	0	125	34	25	13	27	1.93
51676411--51676466	28	2.1	27	83	6	69	30	17	7	44	1.76
51678516--51678563	24	2.0	24	84	8	62	66	0	2	31	1.03
51682083--51682115	17	1.9	17	93	0	57	3	0	9	87	0.63
51685281--51685314	18	1.9	17	88	5	50	61	0	0	38	0.96
51685594--51685631	18	2.0	20	85	15	53	65	5	5	23	1.34
51699589--51699654	23	2.9	23	80	10	73	60	4	3	31	1.32
51704139--51704316	27	6.6	27	84	3	205	29	28	15	26	1.96
51704160--51704315	82	1.9	81	88	3	233	29	28	15	26	1.96
51707948--51707973	13	2.0	13	100	0	52	46	0	23	30	1.53
51733365--51733401	17	2.1	18	90	5	58	54	24	0	21	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51735078--51735262	51	3.6	51	81	2	221	25	17	25	31	1.97
51735274--51735362	45	2.0	45	88	4	135	28	16	22	32	1.96
51745791--51745854	29	2.2	29	80	0	74	39	10	4	45	1.60
51749825--51749882	23	2.5	23	82	0	71	20	15	13	50	1.78
51751162--51751227	32	2.1	32	97	0	123	27	13	15	43	1.84
51753910--51753938	12	2.3	13	94	5	51	75	0	24	0	0.80
51755223--51755367	42	3.5	42	85	3	202	15	31	24	27	1.96
51756905--51757018	60	1.9	60	96	0	210	41	18	19	21	1.91
51763362--51763409	18	2.7	18	83	6	62	31	6	35	27	1.82
51763342--51763420	39	2.1	36	81	11	88	34	3	35	26	1.75
51763858--51763891	17	2.0	17	94	0	59	20	17	8	52	1.71
51766710--51766774	20	3.2	20	67	16	53	30	15	36	16	1.90
51766709--51766860	40	3.9	40	77	14	138	33	15	30	19	1.93
51772075--51772160	42	2.0	42	100	0	172	34	16	16	32	1.91
51777881--51778028	20	7.4	20	67	13	72	35	16	28	18	1.93
51777871--51778028	40	4.0	40	85	2	221	35	16	29	18	1.93
51780240--51780392	29	5.2	29	78	7	157	24	26	12	36	1.91
51780231--51780376	59	2.5	59	86	3	188	24	25	13	36	1.91
51781794--51782065	40	6.8	40	92	1	445	23	29	21	26	1.99
51781794--51782073	122	2.3	122	92	1	458	23	28	21	26	1.99
51784089--51784170	29	2.8	29	94	0	137	24	21	17	36	1.94
51787251--51787285	13	2.7	13	83	16	54	22	14	42	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51788602--51788666	26	2.5	26	84	0	85	35	24	16	23	1.95
51790399--51790447	26	1.9	25	83	4	62	28	12	12	46	1.77
51791801--51791839	18	2.1	19	85	4	53	53	23	2	20	1.57
51794742--51794790	18	2.8	17	78	3	53	40	2	4	53	1.32
51794726--51794788	19	3.3	19	77	6	56	36	3	1	58	1.23
51794749--51794855	19	5.3	19	71	17	74	36	0	4	57	1.26
51794784--51794853	19	3.6	19	82	5	79	32	1	5	60	1.29
51796946--51797003	23	2.5	23	85	0	80	20	13	13	51	1.75
51813780--51814041	138	1.9	138	90	1	418	40	7	17	34	1.78
51823207--51823235	14	2.1	14	100	0	58	37	13	13	34	1.85
51825412--51825458	19	2.5	19	89	0	67	46	21	2	29	1.63
51827353--51827419	26	2.6	26	85	0	89	25	23	23	26	2.00
51829208--51829263	26	2.2	26	80	6	60	42	23	14	19	1.88
51831486--51831608	49	2.5	49	78	3	124	22	8	34	33	1.86
51832329--51832378	26	1.9	26	100	0	100	30	28	16	26	1.96
51838087--51838232	50	2.9	50	79	0	166	21	30	21	26	1.98
51842659--51842708	25	2.0	25	100	0	100	48	24	0	28	1.52
51842665--51842711	15	3.5	15	67	27	50	48	25	0	25	1.51
51855073--51855194	23	5.3	23	76	0	127	31	23	20	23	1.98
51855073--51855187	46	2.5	46	84	0	140	32	23	20	23	1.98
51862507--51862611	30	3.5	31	84	5	110	28	21	26	22	1.99
51862534--51862619	30	2.9	30	91	0	136	31	19	26	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51862696--51862797	52	2.0	52	88	0	150	37	23	19	19	1.94
51862691--51862797	26	4.1	26	80	0	124	37	23	18	20	1.94
51863006--51863161	80	1.9	81	84	3	208	23	16	18	41	1.89
51862992--51863161	27	6.3	27	79	5	184	22	17	18	41	1.90
51867105--51867138	16	2.2	15	89	5	50	44	0	0	55	0.99
51870870--51870940	27	2.8	25	78	4	79	22	18	16	42	1.89
51872453--51872506	25	2.2	25	82	0	63	18	44	11	25	1.83
51902983--51903042	30	2.0	30	83	6	77	46	13	8	31	1.72
51912751--51912785	6	5.8	6	96	0	61	45	17	0	37	1.48
51914655--51914811	43	3.6	43	80	5	165	29	26	22	22	1.99
51921752--51921797	22	2.1	22	88	8	67	19	30	4	45	1.70
51925919--51925951	15	2.1	17	88	11	52	66	0	15	18	1.25
51929136--51929192	19	3.0	18	85	10	69	29	1	1	66	1.12
51929165--51929235	19	3.5	19	78	7	70	30	0	7	61	1.22
51956044--51956078	6	5.8	6	96	0	61	45	17	0	37	1.48
51957949--51958105	43	3.6	43	80	5	165	29	26	22	22	1.99
51965136--51965183	23	2.1	23	96	0	87	20	31	4	43	1.71
51965820--51965893	37	2.0	37	100	0	148	35	27	10	27	1.90
51966324--51966368	20	2.2	20	84	4	54	26	24	6	42	1.79
51969341--51969373	15	2.1	17	88	11	52	66	0	15	18	1.25
51972657--51972713	19	3.0	18	85	10	69	29	1	1	66	1.12
51972686--51972756	19	3.5	19	78	7	70	30	0	7	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51974085--51974121	20	1.9	19	89	10	58	24	32	0	43	1.55
51979192--51979220	15	1.9	15	100	0	58	55	6	3	34	1.44
51980404--51980484	42	2.0	41	90	2	126	25	24	2	46	1.65
51982058--51982090	4	8.2	4	93	0	57	24	30	0	45	1.53
51991129--51991423	144	2.0	144	90	3	459	38	3	11	46	1.58
51992710--51992954	27	9.1	27	75	7	112	38	23	18	19	1.93
51992755--51992870	54	2.2	53	84	7	146	42	24	18	15	1.88
51992710--51992870	27	6.0	27	76	7	114	41	24	17	16	1.89
51992806--51993205	54	7.5	53	83	3	392	36	20	19	24	1.95
51992860--51993205	27	12.9	27	83	4	351	35	18	19	26	1.95
51992801--51993193	81	4.9	81	81	4	438	35	20	19	23	1.96
51993386--51993450	27	2.4	27	83	14	82	20	24	23	32	1.98
51999667--51999874	93	2.2	93	97	0	389	34	8	24	32	1.86
52002361--52002430	35	2.0	35	86	8	97	37	22	8	31	1.85
52002692--52002776	41	2.0	42	90	2	136	30	24	17	27	1.97
52004439--52004463	13	1.9	13	100	0	50	68	24	0	8	1.16
52010026--52010095	35	2.0	35	86	8	97	37	22	8	31	1.85
52010357--52010441	41	2.0	42	93	2	145	29	24	18	27	1.98
52045860--52046132	140	2.0	140	81	4	327	32	22	21	23	1.98
52045724--52046149	70	6.1	70	76	4	295	33	21	19	25	1.97
52046202--52046256	20	2.7	20	88	2	83	41	16	1	40	1.59
52050998--52051403	81	5.0	83	78	10	362	42	20	17	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52050998--52051400	27	14.9	28	78	7	322	42	20	17	19	1.89
52051443--52051486	23	1.9	23	90	9	72	22	4	22	50	1.67
52051457--52051523	24	2.8	23	77	6	71	17	5	25	50	1.69
52051603--52051654	27	1.9	27	85	14	72	25	30	15	28	1.96
52051655--52051710	26	2.2	26	83	0	67	17	23	26	32	1.97
52051701--52051969	32	8.4	32	79	7	269	20	19	21	38	1.94
52051701--52051949	130	1.9	130	84	8	337	20	19	22	37	1.94
52052026--52052090	26	2.5	26	87	0	103	24	24	16	33	1.96
52056531--52056943	70	5.9	70	78	7	333	30	20	20	28	1.97
52056682--52056930	35	7.2	34	63	19	104	30	22	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230