genome.fa.s19.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  193  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58120588--58120886	50	5.8	50	87	2	373	26	22	29	21	1.99
58127762--58127796	6	5.8	6	96	0	61	48	0	14	37	1.44
58135071--58135103	16	2.1	16	100	0	66	36	6	36	21	1.78
58135203--58135331	55	2.3	56	74	16	124	54	3	0	41	1.19
58139391--58139442	24	2.2	24	86	6	70	30	5	7	55	1.52
58141051--58141099	24	2.0	24	92	0	80	34	2	8	55	1.41
58141570--58141609	20	2.0	20	90	0	62	27	10	12	50	1.72
58141555--58141621	34	1.9	35	90	3	109	32	7	11	47	1.68
58147974--58148129	69	2.3	69	95	2	278	39	11	22	26	1.88
58151506--58151543	18	2.0	20	90	10	62	36	15	26	21	1.93
58155668--58155757	11	8.6	11	74	17	68	37	3	0	58	1.14
58155740--58155778	20	2.0	20	89	0	60	38	2	0	58	1.12
58155669--58155778	51	2.1	51	81	8	125	39	2	0	58	1.13
58155739--58155796	20	2.8	20	80	17	57	41	1	3	53	1.28
58156269--58156403	40	3.4	39	78	6	139	36	21	20	21	1.95
58156442--58156558	41	2.9	40	82	7	128	24	21	22	31	1.98
58157534--58157604	32	2.2	32	85	7	90	23	4	38	33	1.75
58157490--58157752	110	2.3	111	82	7	300	29	2	24	42	1.68
58158308--58158342	16	2.3	15	90	5	52	31	34	2	31	1.73
58161483--58161526	23	2.0	22	86	4	61	31	0	13	54	1.39
58161526--58161593	26	2.6	27	85	2	77	38	4	10	47	1.58
58161545--58161597	26	2.0	26	96	0	97	39	5	7	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58161701--58161902	42	4.7	43	86	2	282	26	18	29	25	1.98
58161701--58161902	85	2.4	85	87	1	289	26	18	29	25	1.98
58170420--58170504	40	2.2	40	82	2	100	64	9	2	23	1.35
58172745--58172877	21	6.3	21	73	0	113	42	16	24	16	1.88
58172728--58172830	42	2.5	42	86	0	134	40	17	26	15	1.89
58172708--58172877	63	2.7	63	82	0	180	42	16	24	17	1.88
58179984--58180020	19	1.9	19	89	10	58	54	10	0	35	1.36
58180647--58180738	42	2.2	43	96	2	168	40	0	13	46	1.42
58180807--58180852	21	2.1	21	88	4	65	63	10	0	26	1.27
58192234--58192296	27	2.3	27	83	5	74	68	9	19	3	1.31
58192242--58192303	27	2.4	25	79	12	72	66	12	17	3	1.38
58193763--58193827	31	2.1	31	91	0	103	21	12	38	27	1.89
58196860--58196896	9	4.1	9	92	0	65	45	13	10	29	1.77
58197115--58197175	30	2.0	31	87	3	88	19	37	0	42	1.52
58203045--58203075	15	2.1	14	94	5	53	61	19	3	16	1.48
58203144--58203210	33	2.0	33	97	0	125	56	17	7	17	1.63
58207498--58207733	101	2.3	102	84	4	300	28	24	16	30	1.97
58207496--58207733	50	4.7	50	84	5	282	28	24	16	30	1.96
58232481--58232518	20	2.0	20	89	5	60	31	13	7	47	1.71
58234503--58234563	28	2.1	29	85	8	81	45	0	13	40	1.43
58234527--58234645	33	3.6	32	78	12	123	42	0	15	42	1.46
58234520--58234645	66	1.9	66	87	4	175	44	0	14	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58234687--58235198	117	4.2	126	80	7	570	37	17	15	29	1.91
58247143--58247257	41	2.8	41	83	7	153	22	17	28	31	1.97
58252141--58252452	43	7.3	43	89	2	423	18	16	32	32	1.94
58252141--58252452	85	3.7	86	88	2	423	18	16	32	32	1.94
58252141--58252473	128	2.6	128	84	3	438	20	17	30	31	1.95
58262829--58262888	32	1.9	31	83	10	77	51	3	0	45	1.17
58262861--58262897	16	2.2	18	85	9	51	48	0	2	48	1.15
58263245--58263282	19	2.0	19	85	10	51	50	0	13	36	1.42
58263873--58263964	22	4.2	22	88	0	112	30	27	0	42	1.56
58263914--58264016	52	2.0	51	83	9	129	33	32	0	34	1.58
58263966--58264007	22	1.9	22	90	0	66	33	33	0	33	1.58
58264049--58264111	28	2.2	30	85	8	94	38	0	1	60	1.07
58264201--58264256	24	2.3	23	77	19	60	28	0	5	66	1.14
58266387--58266421	18	2.0	18	88	5	54	48	20	0	31	1.50
58266407--58266954	28	19.5	28	74	15	431	46	24	0	29	1.53
58266375--58266463	23	3.8	23	81	8	117	46	25	0	28	1.53
58266444--58266954	175	3.0	175	89	8	735	46	24	0	28	1.53
58270130--58270372	125	1.9	125	89	3	373	32	24	13	29	1.94
58270133--58270409	125	2.2	125	84	4	364	33	24	13	28	1.93
58275255--58275315	29	2.1	28	85	8	79	26	14	16	42	1.87
58282190--58282228	18	2.2	17	86	13	53	33	0	20	46	1.51
58282446--58282543	23	4.3	23	90	2	162	20	21	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58282448--58282536	45	2.0	45	95	0	160	19	22	26	31	1.97
58289907--58290109	46	4.3	48	88	7	265	35	14	21	28	1.92
58289841--58290109	98	2.7	98	93	0	457	34	14	22	28	1.93
58290073--58290218	37	4.0	37	93	1	242	36	16	21	24	1.94
58291471--58291638	58	3.0	58	87	10	237	22	13	30	33	1.92
58291490--58291580	28	3.2	28	66	22	80	25	15	31	27	1.95
58291531--58291673	49	2.9	49	93	0	232	23	13	30	32	1.94
58294865--58295067	46	4.3	48	88	7	265	35	14	21	28	1.92
58294799--58295067	98	2.7	98	93	0	457	34	14	22	28	1.93
58295031--58295176	37	4.0	37	93	1	242	36	16	21	24	1.94
58297467--58297505	18	2.2	17	86	13	53	33	0	20	46	1.51
58297725--58297813	45	2.0	45	95	0	160	19	22	26	31	1.97
58297723--58297817	23	4.2	23	90	2	156	21	22	25	31	1.98
58303780--58303875	47	2.0	47	97	0	183	43	5	4	46	1.45
58305274--58305352	11	7.6	11	68	18	62	53	2	1	43	1.22
58305272--58305375	31	3.4	30	78	7	120	53	4	0	40	1.28
58311982--58312048	31	2.2	31	97	0	125	49	14	13	22	1.79
58314645--58315486	419	2.0	419	100	0	1684	38	18	6	36	1.77
58328207--58328549	102	3.4	102	81	6	378	27	17	26	28	1.97
58328207--58328543	51	6.7	50	72	10	240	27	17	26	28	1.97
58337872--58337920	25	1.9	25	84	12	64	30	16	10	42	1.81
58343032--58343092	12	5.2	11	76	9	50	44	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58343038--58343082	13	3.7	13	82	14	60	48	0	0	51	1.00
58343026--58343098	24	3.0	24	80	9	69	43	1	1	53	1.17
58343229--58343272	19	2.2	20	88	4	63	59	0	0	40	0.98
58343338--58343392	19	3.0	19	81	5	51	50	0	3	45	1.19
58343394--58343455	5	12.4	5	79	19	51	77	4	16	1	1.02
58345089--58345531	222	2.0	222	99	0	868	31	6	19	43	1.75
58349356--58349384	5	5.8	5	100	0	58	17	0	20	62	1.33
58351657--58351681	12	2.1	12	100	0	50	28	0	8	64	1.22
58352222--58352246	13	1.9	13	100	0	50	48	0	8	44	1.32
58352300--58352399	9	11.6	9	73	12	50	48	16	1	35	1.53
58352298--58352399	43	2.4	43	94	0	186	48	15	0	35	1.52
58356500--58356534	11	3.2	11	87	0	52	28	5	0	65	1.15
58357416--58357457	22	1.9	22	100	0	84	57	9	11	21	1.63
58367190--58367221	6	5.3	6	100	0	64	34	0	50	15	1.45
58368372--58368420	24	2.0	24	96	0	89	53	8	2	36	1.43
58371157--58371272	57	2.0	58	90	10	182	30	22	24	23	1.99
58376149--58376200	24	2.2	24	92	0	86	51	7	3	36	1.49
58377712--58377861	45	3.3	45	87	5	214	21	17	19	42	1.90
58377841--58377889	6	7.8	6	81	2	53	20	18	16	44	1.86
58380435--58380467	17	1.9	17	93	0	57	30	0	0	69	0.88
58392831--58393180	44	8.3	41	70	11	208	29	18	22	30	1.97
58392832--58393120	127	2.3	127	93	1	490	30	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58394464--58394496	17	1.9	17	93	0	57	30	0	0	69	0.88
58400482--58400523	21	2.0	22	81	13	52	61	2	2	33	1.21
58403170--58403197	4	7.0	4	100	0	56	75	0	0	25	0.81
58403171--58403208	8	4.4	9	93	3	53	73	0	2	23	0.95
58403461--58403527	34	2.0	34	81	0	80	47	1	10	40	1.47
58403480--58403538	28	2.0	28	87	6	82	45	0	10	44	1.37
58405020--58405052	5	6.6	5	100	0	66	63	0	18	18	1.31
58413717--58413753	18	2.1	19	85	10	51	72	0	0	27	0.84
58414061--58414100	16	2.4	17	88	12	57	50	2	17	30	1.59
58414678--58415024	45	7.7	44	82	5	216	39	17	19	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230