genome.fa.s19.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  228  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67743495--67743543	27	1.9	26	84	12	66	22	10	8	59	1.56
67749610--67749644	7	5.0	7	96	0	61	82	2	0	14	0.77
67752687--67752724	15	2.5	15	87	12	51	28	2	2	65	1.19
67753700--67753811	55	2.0	55	100	0	224	28	23	12	35	1.91
67763380--67763503	48	2.6	48	76	5	142	45	14	12	28	1.81
67765101--67765146	23	2.0	23	83	8	58	63	6	4	26	1.38
67767368--67767451	37	2.2	36	83	8	98	40	14	7	38	1.73
67769358--67769526	30	5.6	30	97	0	320	55	22	7	14	1.63
67772820--67772877	30	2.1	26	81	15	64	50	6	1	41	1.39
67776123--67776180	28	2.1	28	87	6	82	24	5	5	65	1.34
67778195--67778233	19	2.1	19	95	0	69	61	0	0	38	0.96
67779191--67779220	14	2.1	14	93	0	51	26	6	43	23	1.78
67785759--67785793	15	2.3	15	85	0	52	31	20	0	48	1.50
67785767--67785826	20	3.3	19	78	17	58	40	18	0	41	1.50
67788625--67788667	21	2.0	21	100	0	86	62	13	4	18	1.48
67798155--67798180	12	2.2	12	100	0	52	15	15	19	50	1.79
67799263--67799585	163	2.0	166	82	9	401	30	19	10	39	1.85
67806031--67806080	15	3.3	15	88	0	73	20	38	0	42	1.52
67809057--67809121	31	2.1	31	97	0	121	52	10	15	21	1.73
67809122--67809261	71	2.0	71	98	0	271	31	19	12	37	1.88
67812260--67812736	163	3.0	162	79	10	590	28	18	11	41	1.85
67812425--67812902	146	3.3	143	87	2	645	30	17	11	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67812157--67812905	309	2.5	289	82	6	847	30	18	11	39	1.87
67813265--67813312	24	2.0	24	95	0	87	45	4	27	22	1.70
67832089--67832171	42	2.0	42	97	0	157	33	18	9	38	1.83
67839123--67839155	17	1.9	17	88	11	50	81	3	12	3	0.91
67844770--67844810	15	2.7	15	92	0	64	43	0	39	17	1.49
67848103--67848137	18	1.9	18	88	0	52	37	5	25	31	1.80
67856560--67856598	12	3.2	12	92	0	60	41	25	0	33	1.56
67856560--67856598	18	2.2	18	90	0	60	41	25	0	33	1.56
67857765--67857797	2	17.0	2	87	6	50	48	0	3	48	1.17
67857965--67857993	13	2.1	14	93	6	51	20	0	3	75	0.94
67864688--67864729	22	2.0	21	90	4	66	52	4	0	42	1.22
67865777--67865815	21	1.9	21	89	5	62	69	2	10	17	1.28
67873376--67873439	31	2.1	31	88	5	94	31	17	9	42	1.81
67880837--67880868	6	5.3	6	92	0	55	53	15	0	31	1.43
67889867--67889965	43	2.3	43	91	0	162	45	10	32	12	1.75
67901472--67901501	15	2.0	15	93	0	51	43	0	0	56	0.99
67904545--67904578	17	1.9	17	88	5	50	64	0	2	32	1.08
67915057--67915106	22	2.2	23	89	3	75	60	0	2	38	1.09
67916767--67916826	29	2.1	28	81	6	77	26	15	13	45	1.83
67918524--67918557	18	1.9	18	88	5	52	29	0	5	64	1.17
67920957--67921091	40	3.4	39	74	9	123	34	23	15	26	1.95
67925038--67925080	9	4.8	9	83	11	52	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67925038--67925081	19	2.4	19	88	7	65	29	0	0	70	0.88
67932082--67932115	14	2.3	15	95	5	61	2	0	14	82	0.79
67941830--67941859	6	5.0	6	100	0	60	16	0	0	83	0.65
67943293--67943405	60	1.9	60	88	0	172	30	15	15	38	1.89
67945118--67945159	21	2.0	21	85	4	57	14	4	4	76	1.12
67945634--67945704	30	2.3	30	80	7	72	40	0	1	57	1.07
67947285--67947401	60	2.0	60	91	0	189	29	15	16	38	1.89
67948786--67948821	6	6.0	6	93	0	54	61	0	0	38	0.96
67951542--67951577	14	2.7	13	87	8	54	80	0	8	11	0.90
67953243--67953276	16	2.1	17	88	5	52	29	17	11	41	1.85
67954475--67954525	18	2.9	18	91	2	77	37	0	0	62	0.95
67954465--67954527	17	3.7	17	83	6	74	41	0	0	58	0.98
67954520--67954583	31	2.0	32	85	8	87	29	1	3	65	1.17
67963138--67963751	313	2.0	312	89	4	943	48	14	8	27	1.74
67965537--67965638	40	2.5	40	93	3	170	40	0	0	58	1.04
67965540--67965624	11	8.5	11	74	25	82	40	1	0	58	1.05
67965607--67965646	21	1.9	21	84	0	53	40	2	0	57	1.12
67979694--67979718	12	2.1	12	100	0	50	48	0	0	52	1.00
67987741--67988202	94	4.9	93	78	12	410	41	18	10	29	1.83
67988013--67988202	99	1.9	102	82	4	242	42	17	10	30	1.83
67990012--67990060	9	5.4	9	76	9	55	26	12	20	40	1.87
67992458--67992619	84	1.9	85	81	7	188	26	8	21	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67992361--67992536	96	1.8	96	86	6	257	25	7	22	44	1.80
67992293--67992619	180	1.8	179	87	2	494	25	7	23	43	1.81
67998015--67998072	29	2.0	29	86	0	80	37	10	15	36	1.82
68001011--68001051	18	2.2	20	86	8	59	73	2	2	21	1.07
68002765--68002796	15	2.2	15	94	5	57	56	21	0	21	1.43
68007193--68007231	20	1.9	20	84	5	51	33	7	12	46	1.71
68007328--68008103	192	4.2	185	89	5	1224	29	9	13	47	1.74
68007328--68008097	376	2.1	370	91	4	1255	29	9	13	47	1.74
68008001--68008225	122	1.8	122	97	0	423	33	9	15	40	1.80
68008123--68008530	181	2.2	180	92	4	667	29	9	13	47	1.74
68009181--68009343	85	1.9	84	85	3	220	30	14	19	35	1.91
68011364--68011397	17	2.0	17	100	0	68	11	11	23	52	1.70
68012993--68013025	15	2.1	16	88	5	50	72	0	0	27	0.85
68014665--68014769	41	2.5	41	93	3	174	20	10	12	57	1.64
68016114--68016139	13	2.0	13	100	0	52	7	38	15	38	1.76
68018793--68018938	54	2.7	55	80	8	158	33	21	17	28	1.95
68026797--68027251	174	2.6	174	90	0	712	31	13	19	35	1.91
68038053--68038093	21	2.0	21	85	4	57	56	9	0	34	1.32
68038354--68038395	17	2.4	17	84	11	50	35	2	4	57	1.33
68038326--68038406	26	3.0	29	71	14	73	39	1	2	56	1.20
68046614--68046655	19	2.2	19	87	8	59	59	2	0	38	1.10
68046871--68046938	21	3.2	22	62	8	59	33	13	29	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68046856--68046941	42	2.0	42	100	0	172	39	11	25	23	1.88
68046856--68046921	21	3.2	20	62	8	51	40	12	22	24	1.88
68050981--68051595	78	7.8	76	79	8	452	42	8	16	31	1.79
68051007--68051589	236	2.5	233	80	7	649	42	9	16	31	1.79
68052589--68052614	3	8.7	3	100	0	52	30	0	34	34	1.58
68054133--68054181	21	2.3	22	86	10	66	65	6	4	24	1.33
68063421--68063450	6	4.8	6	95	4	51	83	0	0	16	0.65
68064212--68064266	24	2.4	21	75	16	56	60	0	0	40	0.97
68064457--68064533	30	2.5	31	79	10	86	37	12	6	42	1.69
68064457--68064541	31	2.7	31	75	10	75	35	15	5	43	1.71
68067557--68067597	17	2.4	17	80	19	50	34	2	9	53	1.47
68070155--68070194	16	2.5	16	95	0	71	37	40	20	2	1.66
68072164--68072188	11	2.3	11	100	0	50	32	0	0	68	0.90
68075512--68075588	37	2.1	38	87	2	111	35	7	28	28	1.85
68080605--68080662	10	5.8	10	76	15	57	34	1	0	63	1.04
68080575--68080656	28	2.9	28	78	18	80	34	3	0	62	1.13
68080634--68080712	33	2.6	31	84	11	101	32	1	1	64	1.09
68096477--68096533	26	2.1	27	83	3	71	26	1	7	64	1.28
68100053--68100093	16	2.5	17	81	18	52	21	19	29	29	1.98
68112113--68112144	15	2.1	16	94	5	57	28	34	18	18	1.95
68115806--68115845	16	2.5	17	80	19	50	20	20	30	30	1.97
68123826--68123870	22	2.0	22	91	8	74	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68125369--68125415	12	4.2	11	81	13	51	57	0	2	40	1.11
68136000--68136032	15	2.2	15	94	0	57	42	15	0	42	1.46
68138762--68138824	31	2.0	31	93	0	108	33	14	11	41	1.81
68141896--68141943	4	12.0	4	95	0	87	77	0	22	0	0.78
68142101--68142149	4	12.2	4	100	0	98	26	0	24	48	1.51
68145472--68145529	9	6.2	9	76	11	55	63	1	0	34	1.04
68145472--68145529	19	3.1	19	80	2	73	63	1	0	34	1.04
68147899--68148006	34	3.2	33	80	6	101	41	0	10	48	1.37
68148070--68148702	126	5.0	126	91	0	1007	37	17	17	27	1.92
68151815--68151871	24	2.3	24	77	11	62	54	5	1	38	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230