genome.fa.s19.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  186  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55842532--55842579	14	3.5	13	83	13	53	66	0	4	29	1.10
55844254--55844293	17	2.5	15	84	11	53	70	5	2	22	1.19
55844254--55844334	16	5.3	15	76	14	69	69	3	1	25	1.13
55851175--55851218	21	2.1	21	83	8	54	34	0	13	52	1.41
55855855--55856071	107	2.0	107	86	1	301	39	14	15	30	1.87
55857522--55857576	29	1.9	29	85	10	78	23	25	21	29	1.99
55861833--55861882	22	2.2	24	85	7	68	26	8	0	66	1.19
55864761--55864794	6	5.7	6	100	0	68	14	52	0	32	1.42
55868849--55868891	21	2.0	21	100	0	86	58	9	0	32	1.30
55873935--55873973	18	2.2	17	86	13	53	33	0	20	46	1.51
55874200--55874273	23	3.3	23	86	3	114	18	21	27	32	1.97
55874201--55874266	22	3.0	22	90	2	105	18	22	27	31	1.97
55880713--55880751	18	2.2	17	86	13	53	33	0	20	46	1.51
55880977--55881074	23	4.3	23	90	2	162	20	21	26	31	1.98
55880979--55881067	45	2.0	45	95	0	160	19	22	26	31	1.97
55883901--55884168	125	2.1	127	87	2	380	29	16	16	38	1.90
55884263--55884367	34	3.2	33	80	6	124	44	17	0	38	1.49
55889675--55889719	21	2.0	24	83	12	60	53	8	33	4	1.52
55891448--55892095	126	5.2	126	87	1	877	38	15	17	28	1.90
55891447--55892095	250	2.6	252	85	1	881	38	15	17	28	1.90
55895610--55895649	18	2.2	18	90	0	62	42	10	30	17	1.82
55907676--55907730	27	2.0	27	82	10	67	47	1	9	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55914266--55914468	45	4.5	45	84	3	257	47	13	19	20	1.82
55917433--55917469	16	2.3	16	90	0	65	21	0	29	48	1.50
55936773--55936905	40	3.3	40	94	0	230	27	15	19	37	1.92
55939970--55940515	273	2.0	271	94	2	961	45	11	7	35	1.70
55941955--55941980	13	2.0	13	100	0	52	7	0	23	69	1.14
55942953--55943281	114	2.9	114	98	0	631	41	3	14	40	1.63
55943766--55943994	41	5.6	41	89	3	336	27	19	28	24	1.98
55943768--55943994	82	2.8	81	93	2	375	28	19	28	24	1.98
55950596--55950922	113	2.9	113	97	1	611	40	3	14	40	1.64
55951409--55951594	41	4.5	41	87	2	248	29	18	27	23	1.98
55954137--55954388	40	6.3	40	86	3	303	23	19	28	29	1.98
55962582--55962833	40	6.3	40	89	3	330	23	19	27	28	1.98
55966642--55966706	3	21.7	3	96	0	121	69	0	30	0	0.89
55982727--55982804	39	2.0	39	100	0	156	41	10	12	35	1.77
55984055--55984186	55	2.4	55	87	2	194	22	21	32	22	1.98
55996209--55996260	26	2.0	26	100	0	104	34	23	3	38	1.73
55998560--55998594	6	5.7	6	96	3	61	0	31	0	68	0.90
56002460--56002601	22	6.3	22	79	11	162	44	17	14	23	1.85
56002449--56002579	47	2.9	44	80	9	149	45	17	12	24	1.82
56002958--56002996	20	2.0	20	89	0	60	41	12	5	41	1.65
56008033--56008059	12	2.2	12	100	0	54	22	18	14	44	1.86
56010979--56011021	22	2.0	22	90	0	68	37	13	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56023756--56023801	18	2.6	18	89	6	67	28	8	34	28	1.87
56027953--56027988	19	1.9	19	94	5	65	5	16	5	72	1.23
56028456--56028540	10	8.9	10	75	7	61	37	4	1	56	1.28
56034179--56034288	33	3.3	33	84	2	130	47	17	20	15	1.83
56036694--56036729	11	3.3	11	92	0	54	2	11	0	86	0.68
56038487--56038525	13	2.9	13	81	7	51	51	5	2	41	1.38
56050569--56050593	5	5.0	5	100	0	50	40	0	60	0	0.97
56050831--56050866	6	6.0	6	100	0	72	16	16	0	66	1.25
56051173--56051215	18	2.4	18	88	7	61	53	2	0	44	1.13
56055301--56055369	26	2.7	26	86	4	88	37	18	7	36	1.79
56063581--56064793	405	3.0	404	94	1	2131	33	8	17	40	1.79
56065830--56065919	28	3.2	28	66	9	76	23	17	22	36	1.95
56067567--56067735	81	2.1	81	90	0	266	44	5	13	37	1.66
56068435--56068736	91	3.3	91	77	5	322	32	6	20	40	1.78
56068433--56068761	182	1.8	182	85	2	464	31	6	21	39	1.80
56069729--56069762	17	1.9	18	88	5	52	82	2	2	11	0.89
56074421--56074481	4	14.2	4	77	13	50	68	4	6	19	1.30
56074421--56074481	13	4.8	12	75	13	50	68	4	6	19	1.30
56074421--56074481	17	3.5	17	76	8	61	68	4	6	19	1.30
56088687--56088729	20	2.1	21	95	4	79	23	13	2	60	1.45
56091089--56091134	21	2.2	20	84	3	56	50	0	0	50	1.00
56093393--56093476	3	27.3	3	74	11	64	30	4	3	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56097808--56097842	16	2.2	16	100	0	70	45	5	17	31	1.71
56103243--56103288	17	2.8	18	84	15	64	28	41	30	0	1.56
56106358--56106409	25	2.0	26	88	7	79	21	0	11	67	1.22
56111896--56111940	18	2.5	18	100	0	90	53	17	15	13	1.73
56127071--56127142	5	14.8	5	74	21	64	38	1	4	55	1.28
56127100--56127142	19	2.3	19	92	8	70	41	2	0	55	1.12
56127147--56127188	20	2.1	20	90	0	66	80	2	14	2	0.90
56127152--56127198	16	3.0	16	84	6	60	76	2	17	4	1.04
56127152--56127219	20	3.4	20	79	6	66	72	4	20	2	1.16
56128117--56128231	44	2.6	44	85	2	149	35	13	22	27	1.92
56128117--56128250	46	3.0	45	82	4	153	35	14	23	26	1.93
56135482--56135897	131	3.2	130	87	4	579	30	20	24	25	1.99
56135908--56135949	21	2.0	21	95	0	75	35	4	35	23	1.76
56137674--56137702	12	2.4	12	100	0	58	34	6	0	58	1.25
56137680--56137723	21	2.0	22	83	12	56	25	11	2	61	1.41
56142144--56142178	15	2.3	16	85	14	56	71	0	28	0	0.86
56150705--56150754	17	3.2	17	72	21	63	56	22	10	12	1.65
56152796--56152840	24	1.9	23	86	13	65	46	22	13	17	1.83
56153927--56153979	25	2.2	24	89	3	79	30	15	26	28	1.96
56154415--56154440	13	2.0	13	100	0	52	38	23	0	38	1.55
56161664--56161791	43	3.0	42	74	2	105	29	14	24	32	1.94
56168921--56168960	14	2.9	14	84	0	53	42	0	5	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56179109--56179383	41	6.7	41	91	0	433	22	28	20	28	1.99
56198332--56198382	26	2.0	26	88	3	77	9	9	11	68	1.39
56216178--56216215	18	2.1	18	100	0	76	52	47	0	0	1.00
56216613--56216703	42	2.2	42	84	7	116	18	30	32	17	1.94
56216798--56217144	122	2.8	123	86	6	515	29	15	22	32	1.95
56220175--56220392	116	1.9	116	95	0	391	42	9	9	38	1.70
56220468--56220571	50	2.1	51	90	3	167	26	0	26	45	1.60
56220516--56220557	21	2.0	20	90	4	66	28	0	26	45	1.54
56220389--56220603	117	1.8	118	90	5	346	28	1	24	45	1.64
56220424--56221285	23	36.5	23	74	18	653	27	1	24	46	1.60
56220424--56221285	45	18.3	46	78	16	653	27	1	24	46	1.60
56220751--56220805	28	2.0	28	96	0	101	27	1	25	45	1.64
56220582--56221074	191	2.6	192	91	3	795	27	1	24	47	1.59
56220565--56221193	191	3.4	185	84	11	704	27	0	24	46	1.58
56221059--56221183	50	2.6	51	86	13	185	26	0	27	46	1.53
56221059--56221243	95	1.9	96	82	9	236	27	1	24	47	1.61
56221150--56221288	75	1.9	75	85	0	197	25	2	24	48	1.62
56221291--56221376	43	2.0	45	90	4	140	50	12	0	37	1.41
56221799--56221833	18	1.9	18	94	0	61	34	8	31	25	1.86
56222485--56222509	7	3.6	7	100	0	50	60	12	0	28	1.32
56223740--56223790	22	2.3	22	96	0	93	41	0	31	27	1.56
56223653--56223768	51	2.3	51	95	0	205	45	0	25	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56224149--56224187	16	2.4	16	86	4	51	48	2	10	38	1.51
56231680--56231724	23	2.0	22	83	12	56	28	4	24	42	1.74
56239352--56239700	27	13.0	27	84	0	414	32	20	22	25	1.98
56239718--56239839	24	5.1	24	79	0	109	31	7	17	44	1.76
56239999--56240183	32	5.8	32	84	0	226	24	19	18	37	1.94
56240001--56240183	96	1.9	96	88	0	276	25	19	18	37	1.94
56240190--56240235	22	2.1	22	83	0	56	17	17	17	47	1.83
56242239--56242361	36	3.5	36	81	5	144	23	16	17	43	1.88
56249475--56249568	19	4.8	19	87	5	134	36	10	15	37	1.83
56249475--56249575	40	2.7	38	85	8	134	36	9	16	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230