genome.fa.s19.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  216  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64139939--64139967	15	1.9	15	100	0	58	0	13	0	86	0.58
64140780--64140855	22	3.5	21	75	12	73	65	7	5	21	1.38
64140750--64140819	36	1.9	36	82	5	88	68	7	1	22	1.22
64142464--64142507	21	2.2	20	84	12	54	40	2	2	54	1.25
64142587--64142626	21	1.9	21	94	0	71	42	10	5	42	1.60
64146500--64146533	5	6.8	5	96	0	59	35	0	44	20	1.52
64146900--64146924	5	5.0	5	100	0	50	20	0	0	80	0.72
64146859--64146917	24	2.5	24	78	15	68	35	0	3	61	1.13
64153322--64153474	3	51.7	3	68	10	64	58	3	5	32	1.39
64153473--64153498	3	8.7	3	100	0	52	34	0	30	34	1.58
64159045--64159086	21	2.0	21	85	0	57	57	2	11	28	1.47
64159044--64159097	21	2.5	21	79	8	56	51	3	9	35	1.52
64162904--64162944	13	3.1	14	86	6	50	21	7	24	46	1.77
64163109--64163186	36	2.2	36	86	2	104	20	1	34	43	1.60
64164365--64164396	16	2.0	16	100	0	64	56	6	12	25	1.59
64165398--64165491	47	2.0	47	89	0	143	29	14	22	32	1.94
64165980--64166432	9	49.6	9	69	24	165	46	15	0	37	1.47
64166029--64166384	31	10.5	31	77	18	336	46	14	0	38	1.48
64166061--64166108	24	2.0	24	84	8	62	43	14	0	41	1.45
64165968--64166384	103	4.0	103	94	2	746	47	14	0	38	1.47
64166222--64166431	47	4.3	47	64	31	127	46	16	0	36	1.47
64166325--64166400	16	4.8	16	75	15	86	44	22	0	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64166420--64166456	20	1.9	19	89	10	58	45	13	2	37	1.58
64171731--64171774	21	2.1	21	83	8	54	25	9	2	63	1.35
64172685--64172735	21	2.4	21	86	0	66	39	17	39	3	1.68
64172619--64172802	87	2.1	87	86	4	255	40	19	29	10	1.85
64172785--64172824	21	1.9	21	89	0	62	37	12	42	7	1.71
64173145--64173533	43	9.1	42	88	3	487	21	20	27	30	1.98
64175968--64176096	52	2.5	52	86	10	185	29	30	13	26	1.94
64180422--64180550	52	2.5	52	88	3	181	30	29	13	26	1.94
64180899--64180933	17	2.1	17	89	10	54	40	0	22	37	1.55
64181776--64181943	52	3.3	51	85	4	216	28	13	28	29	1.94
64181779--64181950	51	3.4	52	85	4	192	28	13	28	29	1.95
64188265--64188343	40	2.0	41	87	2	115	49	20	7	22	1.74
64194984--64195015	11	2.8	12	90	9	57	59	21	0	18	1.38
64195407--64195434	5	5.6	5	100	0	56	82	17	0	0	0.68
64201638--64201669	15	2.2	15	94	5	57	31	0	6	62	1.20
64201649--64201707	19	3.1	18	83	11	64	30	0	1	67	1.00
64201600--64201753	83	1.9	83	82	5	195	31	3	4	59	1.35
64201870--64201927	22	2.7	20	79	10	62	63	1	0	34	1.04
64201967--64201992	13	2.0	13	100	0	52	61	0	0	38	0.96
64201962--64202010	21	2.4	21	74	19	50	67	0	0	32	0.91
64201820--64202022	92	2.2	92	85	7	293	63	4	2	29	1.27
64204745--64204799	27	2.1	26	83	10	67	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64204880--64204929	24	2.0	26	88	7	77	36	6	4	54	1.44
64205572--64205642	27	2.6	27	76	10	72	53	2	4	39	1.35
64214370--64214410	7	6.0	7	94	5	75	70	0	14	14	1.16
64214370--64214410	13	3.0	14	92	7	75	70	0	14	14	1.16
64214370--64214410	20	2.0	20	100	0	82	70	0	14	14	1.16
64215629--64216839	44	27.7	43	70	12	480	31	18	20	29	1.96
64215631--64216227	175	3.4	174	95	0	1052	31	18	21	29	1.97
64215932--64216535	311	2.0	308	93	1	1046	31	18	20	30	1.96
64216107--64216360	136	1.9	136	95	0	463	30	18	20	30	1.96
64216243--64216835	172	3.4	172	93	2	956	31	18	20	30	1.96
64216933--64217315	50	7.7	49	69	3	235	29	27	21	22	1.99
64216904--64217391	100	4.9	100	92	0	690	29	26	21	22	1.99
64216983--64217364	50	7.6	50	71	3	293	28	27	22	21	1.99
64217956--64217996	19	2.3	18	87	8	57	75	4	19	0	0.98
64219123--64219184	27	2.3	26	86	2	79	30	6	1	61	1.31
64220613--64220676	21	3.1	21	75	2	58	18	9	15	56	1.66
64237015--64237041	14	1.9	14	100	0	54	74	11	0	14	1.08
64237146--64237282	19	7.0	19	83	5	166	35	8	16	39	1.79
64237453--64237492	20	2.0	20	85	14	55	17	10	5	67	1.37
64237707--64237775	3	22.7	3	73	14	52	27	5	2	63	1.31
64237701--64237775	12	6.3	11	73	15	60	29	5	2	62	1.31
64247958--64248711	384	2.0	383	87	5	1105	37	17	15	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64251165--64251218	24	2.2	24	96	0	99	46	22	14	16	1.84
64251449--64251573	62	2.0	62	87	3	180	31	11	16	41	1.83
64251704--64252276	286	2.0	286	98	0	1110	33	14	19	31	1.92
64252552--64252586	17	2.1	17	94	0	61	14	17	14	54	1.72
64253464--64253504	18	2.2	18	86	4	55	31	2	2	63	1.20
64256802--64256842	19	2.2	19	100	0	82	36	4	14	43	1.67
64268377--64268406	7	4.1	7	91	8	51	16	0	0	83	0.65
64277996--64278229	109	2.2	109	86	3	323	34	11	13	41	1.80
64285135--64285169	3	11.7	3	100	0	70	68	0	0	31	0.90
64289850--64289908	30	2.0	30	81	15	70	40	1	13	44	1.54
64290776--64290813	19	2.0	19	94	0	67	60	5	0	34	1.19
64290909--64290978	30	2.3	30	92	0	113	55	5	11	27	1.57
64292007--64292131	42	3.1	40	78	4	126	20	28	20	30	1.98
64292018--64292129	39	2.7	42	79	4	122	21	28	22	27	1.99
64292430--64292476	22	2.1	22	100	0	94	40	23	8	27	1.83
64294274--64294472	36	5.6	36	73	9	131	19	18	22	39	1.92
64295045--64295334	153	1.9	153	90	0	463	25	30	14	29	1.95
64295196--64295464	132	2.1	129	88	2	394	25	30	13	30	1.94
64307451--64307486	18	1.9	19	88	5	56	36	11	2	50	1.53
64309569--64309617	22	2.2	22	92	0	80	63	8	16	12	1.51
64320836--64320911	38	2.0	39	86	2	109	60	0	2	36	1.11
64320869--64320951	26	3.1	27	89	6	125	67	0	2	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64320869--64320951	27	3.1	26	89	6	114	67	0	2	30	1.03
64328498--64328537	2	20.0	2	84	0	53	45	2	5	47	1.38
64332201--64332238	17	2.2	17	95	0	67	42	26	15	15	1.87
64337460--64337493	17	1.9	18	88	5	52	23	2	8	64	1.36
64338816--64338851	19	1.9	18	88	5	54	52	13	16	16	1.74
64346936--64346988	23	2.4	22	81	9	63	35	0	0	64	0.94
64346952--64346980	8	3.8	8	90	9	51	34	0	0	65	0.93
64346943--64346986	15	2.9	15	86	3	61	34	0	0	65	0.93
64354815--64354847	16	2.0	17	88	5	50	42	12	3	42	1.57
64356034--64356080	15	3.2	15	77	14	53	14	6	10	68	1.38
64358835--64358890	23	2.4	23	82	5	69	33	10	1	53	1.46
64359300--64359361	17	3.4	18	76	14	65	54	1	1	41	1.19
64359322--64359363	20	2.1	20	91	8	68	61	0	0	38	0.96
64359762--64359806	19	2.4	19	79	13	58	35	0	0	64	0.94
64359763--64359803	18	2.3	18	87	8	57	36	0	0	63	0.95
64366667--64366710	9	4.7	9	84	15	54	68	0	0	31	0.90
64366668--64366759	19	4.8	18	70	15	60	64	0	5	30	1.16
64366669--64366784	49	2.4	49	75	16	116	62	0	6	31	1.19
64367691--64367733	10	4.1	10	77	11	50	34	0	2	62	1.08
64378502--64379969	366	4.0	365	89	2	2212	30	26	16	26	1.97
64379959--64380336	127	3.0	127	95	0	679	37	21	10	30	1.87
64381540--64381576	13	2.6	15	83	8	51	35	0	5	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64381705--64381754	22	2.4	20	80	6	55	42	2	18	38	1.61
64391378--64391426	9	5.3	9	82	2	53	71	0	16	12	1.14
64392175--64392215	14	2.7	15	82	17	50	43	0	19	36	1.51
64392485--64392518	17	2.1	16	89	10	52	44	0	20	35	1.52
64395854--64396011	43	3.7	42	79	10	160	31	27	16	24	1.96
64407036--64407086	20	2.6	19	78	12	50	23	0	5	70	1.09
64408823--64408883	31	2.0	31	87	6	88	39	13	1	45	1.53
64408825--64408897	31	2.4	31	79	9	78	36	15	2	45	1.60
64415233--64415294	30	2.1	30	93	0	106	35	14	24	25	1.93
64418006--64418112	58	1.9	58	81	10	136	35	3	1	58	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230