Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  180  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53931513--53931614
38
2.7
38
84
0
123
22
16
25
35
1.95
53934702--53935110
23
17.5
23
71
3
287
43
16
12
28
1.84
53934710--53935110
47
8.6
47
70
12
200
43
16
11
28
1.83
53934685--53935112
70
6.1
70
92
1
649
42
16
11
28
1.84
53935834--53935902
28
2.5
28
87
0
93
30
26
13
30
1.93
53935957--53935995
14
2.7
15
84
8
53
30
20
0
48
1.50
53937146--53937212
30
2.2
30
91
0
107
16
37
26
19
1.93
53938191--53938264
18
3.7
18
70
27
60
25
25
0
48
1.51
53938196--53938279
43
2.0
43
90
4
134
23
25
1
50
1.57
53943279--53943340
6
11.0
6
75
19
62
17
0
4
77
0.94
53943279--53943345
17
4.1
16
85
9
82
16
0
5
77
0.95
53943279--53943333
27
2.0
26
86
13
76
18
0
3
78
0.90
53943279--53943352
33
2.2
33
85
4
96
14
1
5
78
1.00
53943279--53943340
23
2.8
24
78
11
69
17
0
4
77
0.94
53944301--53944338
14
2.5
15
87
8
51
81
10
0
7
0.87
53946955--53947025
30
2.3
31
79
13
76
53
2
0
43
1.15
53947491--53947517
6
4.5
6
100
0
54
18
0
37
44
1.50
53957597--53957632
18
1.9
20
88
11
58
55
2
11
30
1.49
53969763--53969901
33
4.2
33
76
3
127
30
4
40
24
1.74
53978716--53978779
21
3.0
21
84
4
85
12
20
20
46
1.82
53992172--53992216
24
1.9
24
86
13
67
44
15
11
28
1.81
54001845--54002026
91
2.0
91
100
0
364
36
12
28
23
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54013867--54013921
20
2.7
20
82
5
56
65
1
1
30
1.13
54013898--54013944
17
2.6
18
87
12
62
63
0
4
31
1.13
54014059--54014085
14
1.9
14
100
0
54
55
0
0
44
0.99
54031381--54031423
3
14.3
3
95
0
77
69
0
30
0
0.88
54042658--54042776
37
3.0
40
73
9
127
34
21
16
26
1.95
54043309--54043339
15
2.0
16
93
6
55
41
6
0
51
1.27
54049311--54049392
28
2.9
28
90
0
119
29
37
21
10
1.88
54050100--54050131
14
2.1
16
88
11
50
43
21
0
34
1.53
54050131--54050173
22
2.0
21
90
4
68
23
25
6
44
1.78
54050337--54050433
40
2.5
38
76
5
97
32
25
16
24
1.96
54059431--54059462
14
2.3
14
94
0
55
0
9
15
75
1.05
54069634--54069958
46
7.6
45
79
14
359
34
14
22
28
1.93
54069670--54069824
36
4.0
36
78
15
175
36
13
20
29
1.91
54069634--54069958
82
3.9
81
86
7
431
34
14
22
28
1.93
54075515--54075561
17
2.7
17
75
15
51
51
8
4
36
1.52
54077254--54077294
20
2.2
18
87
12
57
36
2
24
36
1.69
54080579--54080614
15
2.4
15
100
0
72
33
36
0
30
1.58
54083919--54083961
20
2.2
20
95
0
77
37
4
16
41
1.69
54086637--54086678
21
2.0
22
90
4
68
64
4
2
28
1.26
54086703--54086743
21
2.0
21
90
0
64
58
4
4
31
1.40
54088218--54088328
44
2.5
43
80
8
109
33
19
18
28
1.95
54088164--54088993
218
3.8
218
91
0
1286
27
22
20
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54088301--54088854
44
12.7
44
72
16
314
26
23
20
29
1.99
54101049--54101091
22
2.0
22
85
0
59
51
4
2
41
1.35
54101155--54101196
21
2.0
22
90
4
68
64
4
2
28
1.26
54101220--54101260
21
2.0
21
95
0
73
56
4
4
34
1.42
54103752--54103794
20
2.2
20
95
0
77
37
4
16
41
1.69
54106469--54106510
21
2.0
22
90
4
68
64
4
2
28
1.26
54109989--54110050
31
2.0
31
83
0
79
41
12
8
37
1.73
54114111--54114204
23
4.1
23
85
0
134
22
25
4
47
1.69
54122972--54123020
16
3.1
15
79
2
53
36
0
6
57
1.24
54123050--54123096
16
2.8
17
81
9
53
70
0
2
27
0.99
54127536--54127614
25
3.2
25
80
5
88
37
20
7
34
1.81
54127554--54127609
20
2.8
20
73
10
51
41
21
7
30
1.80
54127549--54127638
25
3.6
24
78
16
87
42
21
7
28
1.80
54138888--54138927
20
2.0
20
95
0
71
27
20
20
32
1.97
54139027--54139082
21
2.7
21
85
0
85
28
8
33
28
1.87
54143913--54143997
21
4.0
22
87
3
120
51
12
31
3
1.57
54146986--54147029
17
2.5
18
92
7
81
15
0
9
75
1.05
54146990--54147029
6
6.8
6
91
5
64
17
0
10
72
1.11
54152818--54152865
22
2.2
22
100
0
96
20
18
20
39
1.92
54155478--54155534
28
2.0
28
100
0
114
29
21
14
35
1.92
54158791--54158852
29
2.1
29
96
0
115
40
12
0
46
1.42
54160383--54160554
68
2.5
68
85
5
215
25
20
16
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54162527--54162672
76
1.9
76
95
0
265
30
17
25
27
1.97
54163779--54163813
17
2.0
17
88
5
52
40
17
0
42
1.49
54164058--54164186
41
3.1
41
84
2
170
32
27
22
17
1.97
54164058--54164213
41
3.8
40
82
5
152
33
26
22
17
1.96
54164058--54164219
82
2.0
82
80
4
184
32
27
22
17
1.96
54166754--54166811
5
11.8
5
81
7
66
79
1
3
15
0.95
54166774--54166811
7
5.3
7
82
17
51
84
0
0
15
0.63
54167988--54168027
21
1.9
21
89
0
62
40
0
20
40
1.52
54178989--54179240
44
5.6
45
70
10
140
29
21
19
29
1.98
54179069--54179480
142
2.9
143
83
5
507
29
21
18
30
1.97
54179311--54179579
99
2.7
98
85
3
326
28
22
18
30
1.98
54179204--54179677
241
2.0
242
87
3
697
29
21
18
31
1.97
54179524--54179625
44
2.3
44
79
1
105
28
19
23
28
1.98
54179445--54179921
143
3.3
143
85
1
634
28
20
19
31
1.97
54180801--54180872
6
12.0
6
79
5
74
2
20
1
75
1.01
54180823--54180872
24
2.1
24
92
0
82
4
20
0
76
0.95
54184968--54185153
40
4.7
40
88
5
252
24
22
27
26
2.00
54185021--54185186
80
2.1
79
86
5
228
25
20
27
26
1.99
54192901--54193080
76
2.3
79
80
10
210
24
21
27
26
1.99
54192900--54193080
40
4.7
40
81
12
207
24
21
27
26
1.99
54192901--54193078
39
4.6
39
79
12
179
24
21
27
25
2.00
54192955--54193113
79
2.1
75
82
9
187
26
19
27
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54218501--54218548
24
2.0
24
100
0
96
37
4
4
54
1.39
54218958--54218995
18
2.1
19
85
14
53
0
21
0
78
0.74
54218957--54218997
13
3.2
13
90
10
66
0
24
0
75
0.80
54219023--54219072
18
2.8
18
76
11
57
28
6
0
66
1.15
54223900--54223953
9
5.7
9
78
10
54
70
0
1
27
0.98
54223900--54223952
19
2.8
19
86
8
72
69
0
1
28
0.99
54223900--54223953
20
2.8
20
91
5
85
70
0
1
27
0.98
54223918--54223961
20
2.2
20
83
0
52
70
4
0
25
1.06
54224169--54224193
12
2.1
12
100
0
50
32
16
8
44
1.76
54227423--54227454
10
3.2
10
95
0
55
21
9
21
46
1.79
54238218--54238266
25
1.9
25
87
4
71
65
2
4
28
1.22
54238353--54238394
18
2.3
18
84
8
50
30
0
9
59
1.29
54240145--54240193
20
2.3
21
83
13
57
48
0
2
48
1.12
54256363--54256396
13
2.6
13
100
0
68
58
0
0
41
0.98
54270581--54270624
17
2.5
18
89
10
65
63
0
0
36
0.95
54270581--54270636
20
2.9
20
85
15
66
62
0
0
37
0.95
54291550--54291602
7
7.6
7
97
0
88
22
0
0
77
0.77
54291610--54291662
27
2.0
26
85
10
72
22
0
3
73
0.99
54300842--54300874
15
2.2
15
94
0
57
72
0
27
0
0.85
54303288--54303326
21
1.9
21
89
5
62
58
10
2
28
1.44
54305151--54305202
24
2.2
24
85
0
68
53
9
3
32
1.51
54305776--54305836
9
6.6
9
85
7
86
39
31
8
21
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54305774--54305833
29
2.1
29
93
0
102
41
31
8
18
1.80
54310119--54310157
16
2.5
16
91
4
62
25
5
35
33
1.78
54311899--54311950
24
2.2
24
85
0
68
53
9
3
32
1.51
54321060--54321101
11
4.0
11
75
12
52
52
23
7
16
1.68
54321114--54321416
151
2.0
151
99
0
597
26
16
17
39
1.90
54325311--54325355
18
2.5
18
82
7
56
40
17
4
37
1.70
54339674--54339898
80
2.8
79
81
4
229
24
20
27
28
1.99
54339727--54339896
40
4.3
40
90
0
225
23
20
28
27
1.99
54341682--54341713
12
2.7
12
95
0
55
21
18
37
21
1.94
54351005--54351034
12
2.5
12
94
0
51
0
26
0
73
0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230