genome.fa.s19.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  125  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36364031--36364072	16	2.7	15	76	20	50	69	11	11	7	1.37
36365117--36365150	18	1.9	18	88	5	52	52	2	35	8	1.47
36366416--36366469	20	2.7	20	82	0	63	24	20	18	37	1.94
36366416--36366489	30	2.5	30	86	8	98	21	20	18	39	1.93
36366416--36366480	20	3.2	20	71	16	53	23	21	16	38	1.93
36379432--36379456	12	2.1	12	100	0	50	24	28	0	48	1.52
36380454--36380527	13	5.6	12	73	20	51	14	9	4	71	1.26
36380424--36380489	15	4.6	14	74	9	62	6	15	4	74	1.18
36380406--36380488	30	2.7	30	78	9	96	9	14	3	72	1.24
36380454--36380537	38	2.2	37	83	12	100	14	8	4	72	1.24
36381761--36381796	10	3.2	12	85	14	51	72	8	5	13	1.27
36381768--36381823	10	5.2	11	77	18	55	71	7	12	8	1.30
36382680--36382742	11	6.0	10	74	20	58	77	1	17	3	0.97
36382680--36382742	5	12.0	5	79	15	58	77	1	17	3	0.97
36382680--36382740	12	5.7	11	75	17	58	78	1	16	3	0.96
36382689--36382742	16	3.8	14	80	17	58	77	1	16	3	1.00
36382680--36382729	6	8.2	6	83	14	50	78	2	18	2	0.95
36382680--36382740	21	2.8	21	82	5	77	78	1	16	3	0.96
36382790--36382820	12	2.6	12	100	0	62	45	12	16	25	1.83
36385001--36385097	30	3.2	30	75	2	106	28	26	15	28	1.96
36385995--36386043	20	2.3	20	82	10	53	32	8	14	44	1.74
36390340--36390720	40	9.6	40	91	3	538	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36390340--36390720	79	4.8	80	90	2	538	26	28	20	24	1.99
36398206--36398458	40	6.3	40	91	2	375	27	27	20	25	1.99
36409892--36410061	47	3.6	47	90	1	250	32	8	30	28	1.86
36411486--36411631	43	3.4	43	98	0	283	23	15	34	26	1.94
36411613--36411686	29	2.6	29	89	4	105	25	16	32	25	1.96
36411999--36412274	40	6.9	40	81	3	254	24	22	28	24	2.00
36411999--36412275	120	2.3	121	80	4	292	24	23	28	24	2.00
36416546--36416715	47	3.6	47	90	1	250	32	8	30	28	1.86
36418136--36418233	43	2.3	42	96	1	178	23	15	33	27	1.95
36418219--36418292	29	2.6	29	89	4	105	25	16	32	25	1.96
36418603--36418876	40	6.9	40	82	4	254	24	22	28	24	2.00
36418682--36418871	79	2.4	80	83	1	240	23	23	27	24	2.00
36418603--36418876	119	2.3	119	80	5	284	24	22	28	24	2.00
36423142--36423357	93	2.3	94	91	2	335	32	8	30	28	1.86
36423142--36423357	47	4.6	47	91	2	335	32	8	30	28	1.86
36424494--36424562	25	2.8	25	72	16	70	72	5	0	21	1.05
36424610--36424709	26	3.8	26	76	10	105	60	3	4	33	1.31
36427672--36427813	40	3.6	40	81	4	180	12	14	26	45	1.81
36435632--36435680	26	1.9	26	87	4	73	36	22	0	40	1.54
36439050--36439167	29	4.0	29	79	1	110	21	23	14	40	1.90
36439973--36440038	24	2.8	24	83	0	87	18	10	25	45	1.81
36446278--36446307	15	2.0	15	100	0	60	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36446290--36446435	27	5.3	27	72	19	90	60	2	2	34	1.20
36446352--36446424	36	2.0	37	81	7	87	64	1	1	32	1.11
36446598--36446650	20	2.7	20	82	5	72	32	7	0	60	1.25
36446661--36446724	10	6.5	10	76	5	51	34	0	1	64	1.03
36446681--36446748	8	7.6	9	72	15	52	26	0	1	72	0.94
36468548--36469013	228	2.0	227	86	7	643	19	15	16	48	1.81
36470837--36470920	28	3.1	28	69	20	70	42	0	4	52	1.22
36471108--36471149	16	2.6	16	96	0	75	23	28	4	42	1.74
36473393--36473813	209	2.0	209	92	0	691	33	16	12	36	1.87
36482530--36482739	33	5.7	33	70	24	136	21	18	26	33	1.96
36482432--36482626	102	2.0	96	84	8	248	21	19	27	31	1.97
36482526--36482738	75	2.8	77	90	2	333	21	18	27	32	1.96
36483327--36483377	9	5.7	9	95	0	93	47	7	9	35	1.66
36483327--36483379	27	2.0	27	100	0	106	45	7	9	37	1.65
36493982--36494026	15	3.1	14	78	9	54	4	17	0	77	0.92
36493991--36494037	21	2.2	22	88	7	71	8	23	0	68	1.17
36493982--36494037	21	2.7	21	86	5	69	7	21	0	71	1.09
36494927--36495005	33	2.5	32	80	13	99	12	10	2	74	1.16
36495043--36495084	12	3.6	11	84	9	57	16	2	0	80	0.81
36495038--36495074	13	2.9	13	80	19	51	21	8	0	70	1.13
36497010--36497063	25	2.2	25	86	0	72	16	18	18	46	1.85
36497148--36497289	76	1.9	76	88	2	214	43	18	11	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36498983--36499008	12	2.2	12	100	0	52	30	15	38	15	1.88
36499654--36499719	29	2.3	29	81	0	69	39	12	25	22	1.89
36499708--36499779	29	2.4	30	90	2	110	43	13	27	15	1.85
36499765--36499839	30	2.5	32	76	10	86	36	12	25	26	1.91
36499827--36499898	30	2.4	30	83	0	90	41	12	27	18	1.86
36499705--36499898	60	3.3	59	69	7	158	39	13	25	21	1.90
36499737--36499908	90	1.9	90	83	2	220	37	14	26	22	1.92
36501004--36501111	42	2.6	41	86	2	135	19	19	37	23	1.94
36501015--36501113	42	2.4	42	89	0	144	18	18	40	23	1.91
36505002--36505085	6	13.0	6	70	18	53	73	0	20	5	1.03
36505057--36505110	13	4.5	13	75	17	55	72	0	20	7	1.08
36505033--36505110	19	4.3	18	74	21	65	73	0	19	7	1.07
36508015--36508212	50	3.8	50	82	4	207	22	28	20	27	1.99
36510871--36510909	10	3.9	10	82	0	51	17	23	17	41	1.91
36525052--36525081	16	1.9	16	93	6	53	50	20	0	30	1.49
36551191--36551301	40	2.8	40	80	4	136	36	21	23	18	1.95
36551342--36551618	41	6.8	41	82	2	288	22	20	25	30	1.98
36551343--36551618	122	2.3	123	85	3	360	22	21	25	30	1.98
36552233--36552295	26	2.3	28	83	8	85	19	1	42	36	1.61
36552277--36552314	8	4.8	8	81	12	51	21	0	42	36	1.53
36552233--36552390	7	22.3	7	67	19	78	19	1	41	37	1.60
36552324--36552352	15	1.9	15	100	0	58	13	0	48	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36552675--36552939	50	5.3	50	98	0	503	53	0	4	41	1.22
36552705--36552905	15	15.6	14	64	31	60	54	0	5	40	1.24
36557152--36557263	41	2.7	42	78	10	131	25	11	25	36	1.90
36559327--36559417	32	2.9	31	76	13	89	46	3	0	50	1.17
36560419--36560468	24	2.0	25	85	11	68	40	2	4	54	1.31
36560766--36560909	67	2.1	67	94	0	252	46	12	2	38	1.53
36561032--36561069	19	2.1	18	95	5	67	60	0	0	39	0.97
36561160--36561217	27	2.0	27	87	9	80	37	0	0	62	0.96
36563898--36563923	5	5.2	5	100	0	52	38	19	19	23	1.93
36563872--36563923	26	2.0	26	81	7	61	34	15	26	23	1.94
36564340--36564388	19	2.8	17	79	14	55	42	0	30	26	1.55
36573855--36573900	20	2.4	19	85	3	56	23	26	15	34	1.94
36575289--36575325	12	3.0	12	96	4	65	64	0	8	27	1.21
36580012--36580064	23	2.4	22	76	20	56	9	18	1	69	1.25
36591562--36591668	24	4.6	22	67	21	67	11	23	2	62	1.41
36591590--36591630	17	2.4	18	80	8	50	14	24	4	56	1.58
36595476--36595523	20	2.5	20	89	3	71	20	27	16	35	1.94
36613947--36614000	24	2.2	25	78	15	60	11	22	3	62	1.43
36616245--36616272	14	2.0	14	100	0	56	14	7	7	71	1.29
36617871--36617918	20	2.5	20	89	3	71	20	27	16	35	1.94
36622222--36622393	40	4.3	40	88	2	222	25	21	27	25	1.99
36622222--36622393	79	2.2	79	84	3	220	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36622249--36622426	79	2.2	80	80	3	191	25	21	28	24	1.99
36633293--36633412	28	4.3	28	84	4	161	29	23	25	22	1.99
36633293--36633412	56	2.1	56	87	3	179	29	23	25	22	1.99
36633508--36633561	26	2.1	26	86	6	74	31	18	27	22	1.97
36633701--36633779	27	3.0	26	83	9	88	22	16	24	36	1.94
36633733--36633784	27	1.9	27	96	0	95	17	17	26	38	1.92
36633735--36633796	27	2.3	27	88	0	88	20	17	19	41	1.90
36633805--36634023	27	8.1	27	79	8	196	17	17	19	45	1.86
36633732--36633863	67	2.0	67	85	5	178	19	17	18	44	1.87
36633805--36634023	81	2.7	81	87	2	289	17	17	19	45	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230