genome.fa.s19.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  119  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34610198--34610281	44	1.9	44	82	0	105	30	22	15	30	1.95
34610197--34610290	44	2.1	44	78	0	98	29	24	18	27	1.98
34610168--34610603	132	3.3	130	85	3	556	29	25	18	26	1.98
34610619--34610778	86	1.8	88	85	5	227	23	24	27	24	2.00
34618275--34618299	3	8.3	3	100	0	50	64	0	0	36	0.94
34620257--34620373	52	2.2	52	95	0	207	21	27	24	26	1.99
34620257--34620392	52	2.6	52	90	2	184	22	27	24	25	1.99
34621119--34621354	40	5.9	40	77	5	226	36	20	25	17	1.94
34621268--34621334	20	3.3	20	67	22	59	38	22	25	13	1.90
34624772--34624805	17	2.0	17	94	0	59	58	8	11	20	1.59
34630149--34630214	34	1.9	34	81	6	80	62	4	22	10	1.46
34644154--34644258	54	1.9	54	90	0	165	28	28	23	19	1.98
34644158--34644281	54	2.3	54	83	2	151	28	27	22	21	1.99
34645348--34645372	13	1.9	13	100	0	50	60	0	0	40	0.97
34648222--34648285	25	2.6	25	90	5	94	32	20	25	21	1.97
34651870--34651902	13	2.4	14	90	5	50	30	15	3	51	1.58
34653426--34653557	33	3.7	34	75	15	133	31	26	21	20	1.98
34653497--34653693	104	1.9	104	90	2	315	30	26	22	20	1.98
34653613--34653690	27	2.7	27	82	11	84	30	30	20	17	1.96
34653463--34653702	104	2.3	103	84	5	301	31	26	21	21	1.98
34660286--34660441	33	4.5	33	74	15	152	33	27	18	20	1.96
34660286--34660620	108	3.1	107	87	5	425	32	27	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34662889--34662933	14	3.3	14	76	17	58	64	0	20	15	1.29
34662889--34662950	27	2.3	27	94	2	108	64	1	19	14	1.37
34664436--34664474	20	2.0	20	84	0	51	10	17	10	61	1.55
34666881--34666908	12	2.3	12	100	0	56	35	0	25	39	1.56
34675509--34675560	21	2.4	22	83	6	70	69	3	3	23	1.22
34679812--34680089	27	10.3	27	85	0	367	17	18	22	40	1.91
34679812--34680088	136	2.0	135	86	3	378	18	18	22	40	1.91
34690832--34690905	25	3.0	24	80	4	67	22	18	20	37	1.94
34693102--34693150	18	2.6	19	78	18	57	73	2	2	22	1.04
34694518--34694584	35	1.9	35	90	0	107	38	5	8	46	1.60
34694585--34694611	13	2.1	13	100	0	54	37	11	0	51	1.37
34696802--34696857	22	2.5	23	82	2	69	51	1	1	44	1.22
34696833--34696872	16	2.5	16	91	0	62	47	2	7	42	1.45
34696883--34697022	59	2.4	59	97	0	262	38	4	9	47	1.55
34697128--34697171	24	1.9	24	90	9	74	61	2	0	36	1.09
34698139--34698180	21	2.0	22	90	4	68	52	7	2	38	1.42
34699571--34699695	48	2.6	48	81	0	160	44	10	28	17	1.82
34699768--34699864	41	2.4	41	84	3	115	14	20	17	47	1.82
34711735--34711780	20	2.4	19	85	7	65	32	4	0	63	1.14
34711743--34711780	20	1.9	20	94	0	67	34	2	0	63	1.09
34721954--34722014	26	2.3	26	88	0	86	24	13	19	42	1.87
34722234--34722276	19	2.3	19	80	15	54	27	41	18	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34726448--34726575	64	2.0	64	96	0	238	41	15	9	33	1.79
34727678--34727903	40	5.7	40	85	2	269	35	28	20	15	1.93
34727631--34727903	120	2.3	116	81	5	309	35	28	19	16	1.93
34735489--34735666	51	3.6	49	78	6	187	24	16	27	31	1.97
34735683--34735777	45	2.1	45	92	0	163	26	16	24	32	1.96
34741013--34741040	6	4.7	6	100	0	56	46	0	35	17	1.49
34741096--34741227	51	2.6	50	84	4	167	25	18	25	31	1.98
34741148--34741229	26	3.2	26	64	27	66	24	14	28	32	1.94
34741674--34741866	51	3.8	51	80	6	203	24	15	27	32	1.96
34741788--34741868	26	3.2	26	65	28	73	22	14	29	33	1.94
34747065--34747249	51	3.7	50	81	6	187	24	17	26	30	1.97
34747065--34747249	101	1.8	102	91	3	311	24	17	26	30	1.97
34747170--34747251	26	3.2	26	66	27	75	24	14	28	32	1.94
34748905--34749091	51	3.7	51	80	5	193	22	16	28	33	1.95
34748907--34749091	101	1.8	102	83	5	250	22	16	28	32	1.95
34749097--34749188	45	2.0	45	89	0	139	27	17	22	32	1.96
34768603--34768987	47	8.1	47	92	2	583	31	9	30	28	1.88
34769106--34769184	37	2.1	37	90	0	122	24	18	31	25	1.98
34772521--34772648	41	3.1	41	86	0	157	23	18	28	28	1.98
34772909--34772939	7	4.4	7	100	0	62	16	0	25	58	1.38
34772894--34772939	21	2.1	22	84	11	60	17	0	30	52	1.45
34772927--34772966	21	1.9	21	89	0	62	20	0	37	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34772950--34773019	35	1.9	37	85	5	99	25	0	28	45	1.54
34773337--34773369	7	4.7	7	96	0	57	27	0	24	48	1.51
34774464--34774506	6	7.2	6	83	0	50	6	30	30	32	1.84
34778872--34779023	42	3.6	42	90	2	216	25	18	28	27	1.98
34783710--34783803	25	3.8	25	74	5	91	26	22	22	28	1.99
34785394--34785538	55	2.6	55	82	3	175	33	15	19	31	1.93
34785387--34785569	55	3.3	55	77	7	142	34	14	21	30	1.93
34785388--34785572	27	6.7	27	72	11	117	34	14	21	29	1.93
34785553--34785629	27	2.8	28	77	11	81	32	16	25	24	1.96
34785712--34785775	27	2.4	27	83	0	74	39	6	31	23	1.79
34785734--34785804	27	2.6	27	84	0	88	42	7	23	26	1.80
34785726--34785812	27	3.2	27	80	3	86	37	6	27	27	1.82
34787978--34788108	50	2.6	50	85	0	181	21	29	23	25	1.99
34795337--34795375	20	2.0	20	94	0	69	15	23	2	58	1.49
34795629--34795817	50	3.7	50	81	4	189	23	29	20	26	1.99
34796340--34796378	20	2.0	20	100	0	78	28	5	0	66	1.12
34796342--34796378	10	3.7	10	92	0	65	29	5	0	64	1.15
34798603--34798632	15	2.0	15	93	0	51	50	0	33	16	1.46
34798943--34799193	43	5.9	43	84	3	319	24	17	30	27	1.97
34798943--34799193	85	2.9	86	85	0	333	24	17	30	27	1.97
34814580--34814645	25	2.7	25	85	2	89	22	30	18	28	1.97
34817911--34818018	54	2.0	54	92	0	180	25	12	23	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34820756--34820835	42	1.9	42	94	0	142	46	13	12	27	1.80
34822237--34822343	25	4.3	25	75	8	78	25	27	20	27	1.99
34822295--34822351	24	2.3	25	78	6	62	31	22	21	24	1.98
34825855--34825930	29	2.7	29	81	2	82	30	18	19	31	1.96
34828047--34828168	41	3.0	40	80	4	127	32	17	28	21	1.96
34832619--34832842	40	5.7	40	85	7	255	25	22	28	24	2.00
34832619--34832842	79	2.8	80	82	9	253	25	22	28	24	2.00
34832672--34832842	78	2.2	78	86	6	229	25	21	28	24	1.99
34832672--34832875	79	2.6	79	82	5	209	26	21	27	24	1.99
34840619--34840842	40	5.7	40	84	7	255	25	22	27	25	2.00
34840619--34840842	79	2.8	79	82	9	242	25	22	27	25	2.00
34840672--34840842	78	2.2	78	85	6	229	25	21	28	25	1.99
34840672--34840875	79	2.6	79	82	5	209	26	21	27	25	1.99
34847332--34847425	47	2.0	47	97	0	179	36	26	4	32	1.76
34855432--34855471	20	2.0	20	85	9	55	42	20	27	10	1.83
34867179--34867526	40	8.7	40	96	0	624	22	28	20	29	1.98
34870308--34870489	54	3.4	52	78	12	181	43	20	17	18	1.88
34870308--34870490	27	6.8	27	74	7	131	43	20	16	18	1.88
34870308--34870479	80	2.1	80	83	3	211	44	19	17	18	1.87
34870659--34870730	26	2.8	26	86	0	99	15	23	23	37	1.93
34870836--34870925	28	3.1	28	80	13	101	28	24	20	26	1.99
34870840--34870924	30	2.9	30	84	6	104	29	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34871130--34871196	26	2.6	26	92	4	109	25	1	19	53	1.53
34873977--34874223	50	4.8	50	77	6	185	23	26	21	28	1.99
34876248--34876290	22	2.0	22	85	0	59	44	13	6	34	1.72
34876256--34876639	22	17.7	22	79	5	406	45	16	9	29	1.79
34876256--34876639	44	8.9	44	85	4	512	45	16	9	29	1.79
34876346--34876639	11	27.3	11	63	18	82	44	17	8	28	1.79
34876284--34876625	170	2.0	171	87	1	490	45	16	9	28	1.79
34877430--34877578	43	3.5	42	83	2	181	34	24	16	25	1.95
34877458--34877581	43	2.9	43	87	1	187	33	25	15	25	1.95
34879505--34879590	42	2.0	43	86	2	120	46	4	22	26	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230