genome.fa.s19.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  192  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57889402--57889436	18	1.9	18	100	0	70	51	11	0	37	1.38
57892630--57892709	25	3.2	25	100	0	160	35	22	16	26	1.95
57896158--57896228	18	4.1	18	71	15	60	49	1	22	26	1.58
57897299--57897358	30	2.0	30	90	0	93	18	26	31	23	1.97
57898419--57898443	13	1.9	13	100	0	50	40	8	12	40	1.72
57898807--57898852	21	2.2	21	88	7	67	43	4	2	50	1.34
57903571--57903690	34	3.5	34	83	8	154	33	34	11	20	1.89
57911236--57911279	11	4.0	11	82	8	54	34	0	2	63	1.07
57919545--57919598	25	2.1	26	83	10	67	29	3	3	62	1.29
57925644--57925682	16	2.4	16	95	0	69	30	0	23	46	1.53
57932860--57932913	9	5.8	9	81	14	56	38	0	0	61	0.96
57932849--57932913	19	3.4	19	77	12	62	38	3	0	58	1.14
57932979--57933040	21	3.2	19	76	17	56	27	1	6	64	1.27
57932990--57933041	21	2.5	21	78	6	61	28	1	5	63	1.28
57937263--57937290	5	5.6	5	100	0	56	64	35	0	0	0.94
57942076--57942103	6	4.7	6	100	0	56	85	14	0	0	0.59
57943284--57943353	36	1.9	37	85	2	97	27	8	7	57	1.55
57949027--57949063	17	2.2	17	90	0	56	43	32	8	16	1.77
57950624--57950869	41	5.9	41	82	4	242	30	25	20	23	1.98
57950624--57950869	85	2.9	83	78	3	260	30	25	20	23	1.98
57950650--57950915	128	2.1	125	83	4	336	29	26	20	23	1.99
57950673--57950886	43	5.0	43	74	8	152	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57951302--57951352	21	2.4	21	83	0	66	1	45	15	37	1.58
57956895--57956992	20	5.0	21	75	15	102	42	5	5	46	1.47
57956861--57956980	57	2.1	57	92	0	195	42	4	7	45	1.51
57956895--57957011	20	6.0	20	72	15	93	41	4	5	48	1.45
57956874--57956993	57	2.1	57	96	0	222	41	4	6	47	1.49
57957837--57957871	13	2.7	13	100	0	70	40	17	8	34	1.80
57959189--57959224	15	2.3	16	90	4	56	36	2	0	61	1.11
57959350--57959394	21	2.1	21	87	0	63	48	33	2	15	1.57
57959362--57959424	21	3.0	21	83	0	72	44	36	1	17	1.59
57959362--57959424	7	9.0	7	73	0	54	44	36	1	17	1.59
57959503--57959578	21	3.6	21	73	16	75	52	30	0	17	1.44
57959503--57959545	22	2.0	21	90	4	68	53	30	0	16	1.43
57960286--57960754	227	2.1	229	86	2	649	23	20	20	35	1.96
57960280--57960777	114	4.4	113	85	3	624	23	21	20	35	1.96
57964143--57964414	43	6.4	42	79	7	264	26	29	18	25	1.98
57964143--57964452	43	7.3	43	81	6	247	27	30	18	24	1.98
57964143--57964454	128	2.4	129	82	3	362	27	29	17	24	1.98
57964143--57964428	86	3.3	84	82	4	333	26	29	18	25	1.98
57965692--57965735	22	2.0	22	90	0	70	9	18	27	45	1.79
57965858--57966003	44	3.3	44	93	0	240	23	19	28	27	1.99
57965861--57966216	43	8.3	43	80	4	227	26	27	22	24	2.00
57965987--57966195	85	2.5	84	82	3	240	27	32	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57965987--57966235	128	1.9	128	81	3	295	28	31	18	20	1.97
57966074--57966241	86	2.0	85	81	1	201	27	30	18	23	1.98
57966566--57966658	21	4.4	21	81	0	105	6	45	15	33	1.71
57966654--57966818	66	2.5	66	89	3	226	13	24	19	42	1.87
57972225--57972817	9	66.8	9	68	20	188	39	1	14	45	1.52
57972230--57972349	16	7.9	16	69	19	96	35	1	17	45	1.58
57972244--57972398	25	6.2	25	77	11	129	38	1	15	45	1.55
57972270--57972766	34	14.3	35	73	17	178	38	1	14	45	1.52
57972301--57972465	25	6.6	25	70	18	80	38	1	16	43	1.56
57972421--57972763	31	10.5	31	81	12	334	39	1	13	46	1.50
57972366--57972546	81	2.3	80	89	6	284	41	0	14	42	1.50
57972424--57972763	161	2.1	163	87	5	479	39	1	12	46	1.50
57972750--57972782	16	2.1	16	100	0	66	30	0	24	45	1.53
57972719--57972816	47	2.0	49	84	5	128	37	0	15	46	1.46
57972502--57972778	99	2.8	98	85	8	323	37	1	12	48	1.49
57972881--57972913	16	2.1	16	100	0	66	30	18	0	51	1.46
57973810--57973872	33	1.9	33	93	0	108	65	14	0	20	1.27
57973826--57973864	19	2.0	19	85	5	51	69	10	0	20	1.17
57975364--57975417	23	2.5	22	82	8	58	44	0	7	48	1.31
57976301--57976333	14	2.5	13	95	5	57	39	42	0	18	1.50
57976913--57977300	41	9.5	41	94	1	611	32	25	21	20	1.98
57977351--57977471	40	3.0	40	72	6	109	23	20	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57977862--57977887	5	5.2	5	100	0	52	19	0	0	80	0.71
57978948--57979002	12	4.7	12	75	20	53	43	7	0	49	1.30
57978939--57979027	35	2.6	36	78	10	114	41	5	1	51	1.32
57978960--57979119	58	2.8	58	98	0	302	39	5	1	53	1.32
57979396--57979428	14	2.4	14	90	10	50	33	42	0	24	1.55
57979405--57979446	15	2.9	15	85	3	50	35	45	0	19	1.50
57979665--57979719	14	3.9	14	75	13	58	34	38	3	23	1.73
57979681--57979719	14	2.7	14	88	4	60	35	41	5	17	1.72
57979748--57979774	14	1.9	14	100	0	54	37	37	0	25	1.57
57993010--57993047	15	2.5	15	84	12	51	50	0	0	50	1.00
57996169--57996202	14	2.4	14	90	0	50	73	2	0	23	0.97
57996753--57996826	34	2.2	34	83	7	98	31	2	16	50	1.59
58009775--58009848	38	1.9	38	94	0	130	36	17	2	43	1.64
58015353--58015552	35	5.6	35	70	14	113	30	21	11	36	1.89
58015316--58015544	108	2.1	108	85	1	298	31	20	10	36	1.87
58015687--58015778	36	2.6	36	84	6	123	36	9	13	40	1.77
58015424--58015736	135	2.3	135	84	0	401	33	18	10	37	1.85
58016907--58016958	26	2.0	26	100	0	104	57	7	0	34	1.27
58017000--58017093	27	3.5	27	86	2	127	26	27	27	18	1.98
58017174--58017210	11	3.5	11	88	7	58	70	0	29	0	0.88
58017235--58017273	19	2.0	21	85	10	55	23	0	10	66	1.22
58017346--58017395	3	16.7	3	100	0	100	0	0	32	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58017585--58017637	26	2.0	26	96	0	97	43	0	7	49	1.31
58019206--58019261	27	2.0	28	93	6	96	32	0	10	57	1.33
58027518--58027545	14	2.0	14	100	0	56	50	7	7	35	1.57
58028302--58028437	58	2.4	58	92	1	229	52	4	3	38	1.39
58031756--58031795	14	2.9	14	84	0	53	42	17	7	32	1.77
58031721--58031787	34	1.9	35	87	3	100	44	13	10	31	1.77
58038878--58039219	64	5.2	64	63	20	170	32	16	12	38	1.86
58038804--58039280	131	3.6	131	84	0	605	32	16	12	37	1.87
58041789--58041818	3	10.0	3	100	0	60	66	0	0	33	0.92
58046068--58046130	30	2.1	30	82	8	76	38	1	3	57	1.24
58046077--58046134	30	2.0	29	90	10	91	34	1	1	62	1.16
58060712--58060790	31	2.6	31	85	2	88	36	8	11	43	1.72
58060732--58060790	31	1.9	31	96	0	109	35	11	10	42	1.76
58061884--58061934	20	2.4	21	83	6	59	5	25	3	64	1.33
58064736--58064775	17	2.4	17	95	0	71	42	17	5	35	1.71
58069474--58069505	5	6.6	5	92	7	57	18	0	0	81	0.70
58069651--58069700	22	2.3	22	96	0	91	12	42	40	6	1.67
58073985--58074034	20	2.4	22	83	12	70	64	0	2	34	1.05
58074057--58074121	19	3.4	18	72	14	58	61	1	3	33	1.21
58074067--58074179	10	11.4	10	67	16	56	62	0	6	30	1.19
58074066--58074178	29	3.8	29	78	13	115	61	0	6	31	1.20
58074076--58074193	60	2.0	61	86	5	168	61	0	7	30	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58074388--58074444	28	2.0	28	86	6	80	33	3	3	59	1.31
58075992--58076032	20	2.0	20	100	0	82	46	4	14	34	1.66
58088044--58088097	28	2.0	28	85	3	74	50	1	11	37	1.49
58090781--58090883	54	1.9	54	87	0	152	19	32	19	29	1.96
58094915--58094951	9	4.1	9	100	0	74	45	10	10	32	1.74
58099818--58099843	8	3.2	8	100	0	52	26	11	0	61	1.30
58103644--58103764	60	2.0	60	82	3	145	23	29	22	23	1.99
58103637--58103871	64	3.7	63	75	10	183	28	30	18	22	1.98
58115527--58115612	43	2.0	42	88	2	127	30	20	22	26	1.98
58120465--58120489	13	1.9	13	100	0	50	32	4	8	56	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230