genome.fa.s19.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  112  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32471766--32471808	18	2.4	18	81	14	61	46	4	9	39	1.57
32472246--32472340	27	3.4	28	88	5	122	26	12	27	33	1.92
32472274--32472356	27	3.0	27	85	5	78	31	12	24	32	1.91
32476890--32476953	32	2.0	32	100	0	128	34	3	12	50	1.56
32479591--32479823	50	4.8	48	84	4	247	21	33	18	27	1.96
32479587--32479823	100	2.4	97	83	4	298	21	32	18	27	1.97
32479844--32479936	44	2.1	44	95	0	168	23	20	12	43	1.86
32481101--32481467	183	2.0	183	100	0	734	39	19	8	32	1.82
32481607--32481692	44	2.0	42	81	4	100	45	6	4	43	1.51
32483651--32483679	4	7.5	4	92	7	51	24	0	0	75	0.80
32487425--32487543	42	2.9	40	79	7	121	31	25	19	23	1.98
32490019--32490043	9	2.8	9	100	0	50	32	12	20	36	1.89
32495564--32495607	24	1.9	23	81	9	54	61	9	11	18	1.55
32503185--32503308	62	2.0	62	98	0	239	25	16	9	48	1.77
32518613--32518699	40	2.2	40	97	0	165	21	16	12	49	1.78
32518642--32518674	15	2.2	15	100	0	66	18	18	9	54	1.69
32518657--32518710	25	2.2	25	96	0	99	22	12	16	48	1.80
32522935--32523051	51	2.3	51	85	5	148	23	15	29	31	1.95
32523026--32523079	28	1.9	28	96	0	99	18	11	27	42	1.84
32533106--32533290	101	1.8	102	89	3	293	23	18	27	29	1.98
32533106--32533290	51	3.7	50	78	6	178	23	18	27	29	1.98
32533318--32533445	33	3.6	33	75	17	139	18	17	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32533313--32533525	75	2.8	76	89	2	313	22	18	26	32	1.97
32548838--32549198	47	7.6	47	92	2	544	29	29	8	32	1.86
32548838--32549198	49	7.6	49	91	4	555	29	29	8	32	1.86
32548838--32549198	96	3.8	96	92	3	570	29	29	8	32	1.86
32565381--32565432	26	2.0	25	85	3	68	19	17	32	30	1.95
32565410--32565553	41	3.5	41	76	10	132	22	15	25	36	1.94
32570964--32570989	11	2.4	11	100	0	52	38	11	0	50	1.39
32573508--32573653	27	5.4	27	87	4	215	19	17	20	43	1.89
32577011--32577068	27	2.1	27	81	6	64	18	12	31	37	1.88
32577025--32577144	27	4.4	27	83	4	143	18	15	20	46	1.84
32577397--32577434	20	1.9	20	94	0	67	18	34	23	23	1.96
32581256--32581303	25	1.9	25	83	8	62	20	8	4	66	1.35
32585733--32585784	23	2.3	23	86	3	70	48	1	1	48	1.24
32585970--32585999	15	2.1	15	93	6	53	33	0	0	66	0.92
32589045--32589097	26	2.0	26	85	0	70	18	18	32	30	1.96
32589004--32589134	67	1.9	68	82	10	162	24	17	27	30	1.97
32589074--32589224	42	3.6	43	76	7	148	22	17	25	34	1.96
32594659--32594686	11	2.5	11	100	0	56	35	10	0	53	1.36
32597200--32597344	27	5.4	27	86	6	206	19	17	20	43	1.88
32597200--32597344	53	2.7	53	92	2	229	19	17	20	43	1.88
32600692--32600749	27	2.1	27	81	6	64	18	12	31	37	1.88
32600706--32600825	27	4.4	27	83	4	143	18	15	20	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32601076--32601113	20	1.9	20	94	0	67	18	34	23	23	1.96
32604824--32604871	25	1.9	25	83	8	62	20	8	4	66	1.35
32621398--32621448	23	2.3	21	83	12	59	47	0	7	45	1.32
32621849--32621890	7	5.7	7	83	10	57	14	52	0	33	1.42
32621849--32621894	16	3.1	15	87	9	67	13	52	0	34	1.40
32643557--32643600	22	2.0	22	95	0	79	25	36	4	34	1.76
32648787--32648851	11	5.8	12	78	12	50	76	1	7	13	1.06
32648799--32648849	11	4.7	11	83	11	70	80	0	7	11	0.90
32648798--32648837	20	2.0	20	100	0	80	85	0	5	10	0.75
32653251--32653311	19	3.0	21	76	16	65	32	31	3	32	1.74
32653623--32653664	21	2.0	22	90	4	68	76	4	7	11	1.15
32653608--32653679	36	2.0	35	84	12	94	73	5	8	12	1.23
32653644--32653680	15	2.4	15	95	4	65	75	2	10	10	1.14
32672707--32672739	16	2.0	17	88	5	50	39	15	12	33	1.84
32675312--32675369	30	1.9	30	85	0	80	17	24	25	32	1.96
32675397--32675480	35	2.3	36	75	4	89	26	17	30	25	1.97
32682037--32682069	16	2.1	16	88	11	50	60	0	3	36	1.12
32688257--32688292	19	2.0	18	89	10	56	16	38	0	44	1.48
32698388--32698453	20	3.2	20	67	12	60	25	4	10	59	1.50
32698497--32698531	16	2.2	16	100	0	70	28	14	5	51	1.65
32706647--32706689	22	2.0	22	90	9	70	62	2	0	34	1.08
32707127--32707157	16	1.9	16	93	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32707655--32707728	25	3.2	25	59	18	59	45	8	16	29	1.76
32707640--32707739	45	2.2	45	98	1	193	51	6	16	27	1.67
32707781--32707819	3	13.0	3	100	0	78	33	33	0	33	1.58
32713800--32713853	24	2.2	24	90	0	81	31	20	29	18	1.96
32730076--32730422	50	6.8	50	84	3	374	27	20	28	22	1.99
32743793--32743860	13	5.8	12	73	23	56	7	19	1	72	1.16
32743818--32743883	20	3.4	19	78	12	64	4	18	1	75	1.04
32743774--32743865	22	4.2	20	77	18	78	7	17	2	72	1.17
32748102--32748162	29	2.1	30	90	3	97	31	4	11	52	1.58
32748226--32748272	16	3.0	15	77	20	51	44	2	0	53	1.12
32748224--32748272	10	4.6	11	73	16	50	44	2	0	53	1.12
32748224--32748272	22	2.3	23	83	16	70	44	2	0	53	1.12
32748423--32748452	12	2.5	12	94	0	51	16	43	10	30	1.81
32755748--32755780	16	2.1	16	100	0	66	39	24	6	30	1.79
32766066--32766101	7	5.3	7	96	3	65	38	0	0	61	0.96
32771821--32771857	18	2.0	19	89	5	58	37	0	8	54	1.30
32783736--32783813	21	3.7	21	76	8	77	50	10	6	33	1.62
32783736--32783794	22	2.7	22	81	7	84	52	8	3	35	1.49
32785962--32786000	20	2.0	20	84	0	51	46	12	7	33	1.71
32786446--32786500	27	2.0	27	100	0	110	32	32	14	20	1.92
32787319--32787454	64	2.1	64	95	0	245	44	5	15	35	1.69
32791740--32791781	11	3.3	13	75	18	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32791726--32791781	25	2.3	25	93	6	98	46	0	0	53	1.00
32797085--32797142	28	2.1	28	83	6	73	43	10	13	32	1.78
32801429--32801712	141	2.0	141	96	0	523	43	13	13	29	1.81
32801721--32801780	28	2.1	28	81	6	68	45	8	13	33	1.73
32808526--32808578	25	2.1	25	93	6	90	30	18	11	39	1.86
32809494--32809536	20	2.2	20	83	8	52	20	2	23	53	1.57
32823925--32824022	38	2.5	40	85	6	130	51	10	2	36	1.48
32841799--32841846	23	2.0	24	92	4	80	29	16	12	41	1.85
32841806--32841852	12	4.0	12	75	5	51	31	14	10	42	1.80
32849337--32849391	27	2.0	27	85	0	74	27	25	3	43	1.71
32849347--32849404	27	2.1	27	93	0	98	24	24	6	44	1.77
32854991--32855051	7	8.6	7	81	3	77	14	0	36	49	1.44
32854981--32855039	14	4.1	14	78	6	55	15	0	35	49	1.45
32854980--32855043	29	2.2	30	88	2	94	14	0	34	51	1.42
32855665--32855708	6	7.3	6	89	0	70	18	0	43	38	1.50
32855665--32855720	18	3.1	18	86	0	76	16	0	41	42	1.48
32855522--32856100	230	2.4	229	85	8	730	33	2	20	43	1.66
32857934--32857976	18	2.4	18	88	0	59	44	9	27	18	1.80
32859807--32859834	11	2.5	11	100	0	56	42	7	28	21	1.79
32859786--32859885	51	2.0	51	90	4	157	46	2	28	24	1.64
32865334--32865398	32	2.1	32	97	2	123	47	12	9	30	1.72
32866387--32866415	13	2.2	13	100	0	58	58	6	20	13	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32868508--32868926	107	4.0	106	85	4	551	30	17	18	33	1.94
32869837--32869871	16	2.2	16	89	0	52	20	11	22	45	1.82
32879833--32880197	107	3.4	107	88	1	502	29	18	18	33	1.95
32890991--32891062	8	9.1	8	77	17	62	51	8	0	40	1.32
32890955--32891073	39	3.2	37	81	16	131	50	6	1	41	1.39
32890956--32891062	47	2.3	44	80	17	128	50	6	1	41	1.39
32895349--32895505	57	2.8	58	83	5	205	40	17	5	36	1.73
32896975--32897019	18	2.5	19	76	16	51	68	6	2	22	1.24
32897302--32897330	14	2.0	15	93	6	51	68	0	0	31	0.89
32908235--32908321	45	1.9	45	95	0	156	33	25	17	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230