genome.fa.s19.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  127  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36985682--36985707	8	3.2	8	100	0	52	76	0	0	23	0.78
36986874--36986914	20	2.0	20	95	0	73	17	12	14	56	1.68
36986889--36986945	28	2.0	28	83	12	73	14	14	8	63	1.52
36989713--36989744	15	2.0	17	88	11	50	56	25	12	6	1.59
36993222--36993249	13	2.2	13	100	0	56	35	0	0	64	0.94
36993622--36993659	8	4.6	8	84	15	51	76	0	13	10	1.02
36993622--36993659	17	2.3	17	86	13	53	76	0	13	10	1.02
36995346--36995401	21	2.7	21	91	0	94	25	8	37	28	1.86
36996432--36996464	12	2.8	12	90	4	50	6	18	33	42	1.75
37001409--37001456	24	2.0	24	91	0	78	22	20	0	56	1.43
37001409--37001450	12	3.4	13	77	12	52	23	23	0	52	1.47
37001920--37001991	18	3.7	20	77	9	76	11	27	1	59	1.40
37003881--37004059	96	1.9	96	87	0	268	32	11	18	36	1.88
37005067--37005115	24	2.1	24	81	11	57	48	12	14	24	1.77
37007057--37007098	19	2.2	19	100	0	84	23	23	23	28	2.00
37020856--37020908	20	2.7	20	94	2	90	54	11	9	24	1.65
37022835--37023010	96	1.8	96	92	0	298	33	16	15	34	1.90
37027007--37027047	18	2.2	18	86	8	55	70	0	17	12	1.16
37029730--37029789	26	2.3	26	82	0	75	18	20	23	38	1.93
37029789--37029973	32	5.8	32	83	0	181	24	20	18	36	1.95
37029789--37029973	64	2.9	64	81	0	208	24	20	18	36	1.95
37032910--37033002	19	5.1	19	68	21	72	45	12	9	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37032900--37033024	54	2.3	54	92	0	205	42	14	9	33	1.78
37033297--37033334	20	1.9	20	89	10	60	36	13	15	34	1.87
37034524--37034570	18	2.6	18	93	0	76	6	19	2	72	1.17
37034524--37034590	6	11.0	6	73	7	55	4	17	1	76	1.04
37038733--37038774	17	2.5	16	82	17	50	11	21	4	61	1.48
37051254--37051288	18	1.9	18	88	11	54	22	20	0	57	1.41
37054443--37054512	34	2.1	34	100	0	140	42	17	8	31	1.79
37060276--37060308	12	2.8	12	90	4	50	72	3	3	21	1.11
37061280--37061344	30	2.2	29	79	15	71	60	0	24	15	1.36
37061349--37061418	18	3.9	17	76	9	59	57	2	28	11	1.48
37066445--37066502	10	5.7	10	76	11	64	29	27	13	29	1.94
37066445--37066505	20	3.0	20	83	9	79	27	26	13	32	1.93
37068804--37068883	37	2.2	37	86	4	108	27	31	17	23	1.97
37069014--37069485	47	10.2	47	91	2	722	26	30	10	32	1.90
37069147--37069223	25	3.2	25	64	17	72	28	28	7	35	1.85
37069150--37069224	23	3.2	23	63	29	59	28	28	8	36	1.85
37069002--37069480	184	2.6	184	89	2	728	25	30	10	32	1.90
37069014--37069485	231	2.0	232	90	3	736	26	30	10	32	1.90
37073752--37074213	40	11.6	40	95	0	800	26	28	20	24	1.99
37076010--37076089	37	2.2	37	86	4	108	27	31	17	23	1.97
37076220--37076680	47	10.2	47	80	6	490	26	30	10	32	1.90
37076220--37076680	94	5.1	94	85	8	616	26	30	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37076353--37076429	25	3.2	25	64	17	72	28	28	7	35	1.85
37076356--37076430	23	3.2	23	63	29	59	28	28	8	36	1.85
37076327--37076659	173	1.9	174	92	0	560	24	29	10	34	1.90
37076415--37076565	79	1.9	81	95	2	279	24	30	9	35	1.87
37076278--37076680	220	1.8	219	93	0	698	25	30	10	33	1.90
37080246--37080270	12	2.1	12	100	0	50	76	8	0	16	1.02
37081331--37081393	20	3.0	21	79	9	74	74	4	14	6	1.18
37081437--37081471	18	1.9	18	88	11	54	57	0	20	22	1.41
37083524--37083585	21	3.0	20	81	11	72	27	25	12	33	1.93
37083524--37083582	10	5.7	10	75	13	57	28	27	13	30	1.94
37095856--37096080	40	5.7	40	84	5	260	25	27	21	24	1.99
37095858--37096080	119	1.9	120	82	6	283	25	27	21	25	2.00
37097209--37097328	56	2.1	56	98	0	231	22	23	9	45	1.81
37102295--37102326	16	2.0	16	93	0	55	15	12	25	46	1.81
37102513--37102660	72	2.0	73	84	3	192	25	16	29	29	1.97
37104782--37104841	18	3.2	18	78	7	66	73	3	16	6	1.18
37110113--37110336	40	5.7	40	86	5	287	25	28	21	24	1.99
37110113--37110336	79	2.8	79	85	6	283	25	28	21	24	1.99
37110115--37110336	119	1.9	119	83	5	297	25	27	22	24	2.00
37110542--37110588	20	2.3	20	81	0	58	29	34	12	23	1.92
37125352--37125400	24	2.0	24	81	14	57	71	2	2	24	1.07
37126947--37126985	13	2.9	13	81	7	51	71	2	10	15	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37129208--37129254	19	2.4	19	85	3	58	76	2	12	8	1.09
37129219--37129295	33	2.3	32	82	10	93	74	2	15	7	1.16
37133387--37133429	22	1.9	23	90	4	70	37	32	4	25	1.77
37135089--37135142	20	2.7	20	85	0	72	38	18	18	24	1.93
37144799--37144853	13	4.2	13	77	9	51	47	0	3	49	1.19
37144780--37144838	17	3.6	17	78	15	54	50	0	3	45	1.18
37144887--37144920	16	2.1	16	88	0	50	32	2	8	55	1.45
37147291--37147315	10	2.5	10	100	0	50	0	12	0	88	0.53
37160154--37160261	32	3.2	31	75	21	92	45	28	11	14	1.79
37160204--37160267	32	2.0	32	96	0	119	46	26	9	17	1.78
37166062--37166103	18	2.3	19	87	4	59	9	9	7	73	1.24
37176384--37176531	50	2.9	50	79	9	133	40	13	14	31	1.84
37176411--37176542	50	2.6	51	84	3	176	37	12	14	34	1.84
37181428--37181477	27	1.9	27	84	8	68	56	20	0	24	1.43
37181660--37181780	50	2.4	52	87	2	174	37	13	17	32	1.88
37183673--37183721	18	2.6	19	78	18	57	73	2	2	22	1.04
37190183--37190209	4	6.8	4	100	0	54	77	0	0	22	0.76
37191898--37192074	27	6.6	27	84	0	201	43	8	20	27	1.80
37191898--37192074	54	3.3	54	82	0	228	43	8	20	27	1.80
37191898--37192074	81	2.2	81	85	0	237	43	8	20	27	1.80
37192335--37192359	9	2.8	9	100	0	50	28	12	24	36	1.91
37194965--37194998	16	2.1	16	88	0	50	55	8	2	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37196133--37196166	18	1.9	17	88	5	50	23	11	2	61	1.43
37204729--37204782	20	2.7	20	85	0	72	24	18	18	38	1.93
37204729--37204802	30	2.5	30	86	8	98	21	18	18	40	1.91
37206396--37206452	24	2.4	23	77	8	62	26	3	31	38	1.73
37206436--37206478	22	1.9	23	90	4	70	25	4	32	37	1.77
37210570--37210657	33	2.8	32	76	17	94	6	15	2	75	1.12
37210611--37210651	19	2.2	19	86	0	55	9	12	2	75	1.13
37212892--37212929	16	2.4	16	86	8	51	10	7	2	78	1.04
37214490--37214517	4	7.0	4	100	0	56	25	0	0	75	0.81
37223970--37224017	20	2.4	20	89	0	78	41	16	20	20	1.90
37226146--37226196	20	2.5	21	87	9	79	27	17	29	25	1.98
37227540--37227599	26	2.4	24	78	13	66	8	23	3	65	1.36
37230216--37230249	13	2.8	12	90	4	50	20	2	2	73	1.09
37231576--37231627	25	2.0	25	82	17	63	63	13	1	21	1.39
37231735--37231784	20	2.4	20	76	6	55	44	16	18	22	1.87
37231742--37231791	20	2.5	19	75	9	55	38	16	20	26	1.92
37239374--37239598	40	5.7	40	83	6	242	25	27	21	25	1.99
37239530--37239607	40	1.9	41	82	10	97	26	28	20	24	1.99
37245241--37245487	25	9.9	25	79	3	228	26	12	22	38	1.89
37245241--37245491	50	5.0	50	82	1	263	27	11	22	37	1.89
37245275--37245487	75	2.8	75	84	1	284	27	12	21	38	1.90
37256140--37256181	19	2.3	19	87	4	59	7	23	4	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37256144--37256222	28	2.8	29	76	18	76	8	27	3	59	1.45
37257750--37257811	10	5.9	10	74	10	52	33	32	3	30	1.74
37257750--37257812	21	3.0	21	88	2	90	33	33	3	30	1.74
37259453--37259499	20	2.4	20	79	13	62	36	12	25	25	1.92
37262370--37262411	20	2.1	20	90	0	66	26	19	16	38	1.92
37264687--37264796	6	18.0	6	69	10	71	72	2	18	6	1.18
37265369--37265478	34	3.2	34	96	2	195	36	10	12	40	1.79
37275402--37275471	30	2.3	30	100	0	140	35	10	15	38	1.81
37277272--37277323	18	2.9	18	82	5	61	71	0	19	9	1.13
37277291--37277346	24	2.3	24	81	0	58	69	3	17	8	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230