genome.fa.s19.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  172  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51274474--51274513	16	2.5	15	84	11	53	47	2	0	50	1.14
51274442--51274513	32	2.2	31	83	11	83	45	4	1	48	1.30
51274801--51274920	63	1.9	61	86	8	170	32	11	13	42	1.80
51275042--51275125	33	2.6	31	77	15	89	64	4	7	23	1.38
51275268--51275310	22	1.9	22	90	4	68	27	0	0	72	0.85
51275268--51275310	17	2.5	17	84	3	50	27	0	0	72	0.85
51275673--51275720	20	2.5	20	86	3	71	31	0	8	60	1.26
51281085--51281110	3	8.7	3	100	0	52	0	30	0	69	0.89
51285612--51285681	27	2.6	27	95	2	113	31	28	12	27	1.93
51285612--51285709	28	3.5	28	90	2	135	31	28	13	26	1.94
51290176--51290469	143	2.0	144	94	0	518	31	15	20	32	1.93
51298563--51298641	39	2.0	39	97	0	149	22	10	18	48	1.78
51309593--51309666	25	3.0	25	80	5	71	33	22	14	28	1.94
51310516--51310551	16	2.2	17	90	5	56	11	52	0	36	1.37
51316884--51316913	7	4.3	7	100	0	60	13	56	0	30	1.37
51320449--51320483	15	2.4	14	90	9	52	11	2	0	85	0.69
51322717--51322915	81	2.5	81	83	1	229	32	17	24	25	1.97
51327191--51327251	30	2.1	30	84	3	79	52	11	6	29	1.62
51334621--51334662	16	2.7	16	75	17	52	59	0	0	40	0.97
51338020--51338067	20	2.4	20	100	0	96	33	29	10	27	1.90
51340418--51340507	40	2.2	40	82	0	108	38	16	22	22	1.93
51353530--51353571	19	2.2	20	91	4	68	54	7	4	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51354400--51354427	9	3.1	9	100	0	56	57	10	0	32	1.33
51354370--51354570	59	3.1	68	83	13	298	45	9	4	40	1.58
51354559--51354600	16	2.6	16	92	0	66	42	7	2	47	1.43
51354574--51354628	22	2.5	22	84	0	74	43	1	1	52	1.22
51354399--51354592	59	3.1	63	78	15	217	47	9	3	39	1.53
51357302--51357357	29	2.0	28	86	10	78	39	19	7	33	1.79
51357532--51357575	14	3.1	14	86	3	61	59	4	0	36	1.18
51357536--51357619	25	3.2	25	75	11	78	54	2	1	41	1.21
51358036--51358106	37	1.9	36	82	2	88	32	0	5	61	1.19
51358842--51358908	30	2.3	30	82	12	77	59	4	0	35	1.18
51358848--51358917	29	2.2	33	75	14	76	62	4	0	32	1.14
51360411--51360449	17	2.2	18	86	13	55	74	2	17	5	1.12
51375821--51375861	5	8.2	5	100	0	82	41	19	0	39	1.52
51380152--51380185	16	2.1	17	88	5	52	79	0	11	8	0.94
51384299--51384436	43	3.3	42	77	8	145	26	25	16	31	1.97
51386621--51386658	14	2.7	15	88	8	53	23	23	21	31	1.98
51390648--51390734	40	2.2	40	95	0	165	36	18	16	28	1.92
51397671--51397729	15	3.8	16	86	10	86	32	16	11	38	1.86
51398704--51398754	21	2.4	21	83	9	59	43	27	7	21	1.80
51409641--51409781	67	2.1	67	95	0	255	38	6	19	36	1.77
51418891--51418963	34	2.1	34	94	0	128	31	23	20	24	1.98
51424199--51424246	17	2.9	17	75	3	53	45	10	16	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51438890--51438929	19	2.1	19	90	9	64	30	10	10	50	1.69
51452003--51452132	58	2.2	58	83	9	156	42	2	6	49	1.40
51455968--51456027	31	1.9	31	96	0	111	35	21	23	20	1.96
51456004--51456042	19	2.1	19	95	0	69	35	23	20	20	1.96
51456174--51456221	19	2.5	19	80	13	53	33	10	16	39	1.83
51459059--51459092	13	2.8	12	82	8	50	23	0	2	73	0.97
51461634--51461684	23	2.2	23	85	0	66	47	7	9	35	1.66
51461647--51461694	23	2.1	23	88	0	69	41	10	10	37	1.74
51461653--51461700	23	2.0	23	84	4	60	47	8	8	35	1.64
51467946--51467972	8	3.4	8	100	0	54	0	11	0	88	0.50
51470911--51471062	28	5.2	28	64	12	90	28	21	15	34	1.93
51470924--51471083	31	5.4	31	65	11	91	30	23	14	31	1.94
51470896--51471459	59	9.7	59	81	6	605	28	24	13	34	1.93
51471135--51471355	28	7.6	28	68	17	130	28	27	12	32	1.92
51471157--51471377	31	7.4	31	66	14	142	28	27	11	32	1.92
51470905--51471345	237	1.9	237	86	0	641	28	24	12	34	1.92
51471327--51471428	51	2.0	51	82	3	125	32	22	10	34	1.89
51471421--51471498	29	2.7	29	85	0	93	21	24	14	39	1.90
51489867--51489897	13	2.3	14	94	5	55	67	12	19	0	1.22
51490139--51490173	16	2.1	18	89	10	56	80	5	8	5	1.03
51491006--51491138	44	3.0	45	78	10	155	23	28	22	25	1.99
51490994--51491144	45	3.4	45	79	9	164	21	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51491127--51491606	131	3.7	131	92	1	759	24	24	20	30	1.98
51491283--51491593	44	7.1	43	65	17	149	26	23	20	30	1.98
51492826--51492882	7	8.0	7	81	18	73	14	14	0	71	1.14
51492826--51492890	22	3.1	21	85	10	80	12	13	0	73	1.09
51492837--51492887	16	3.3	16	86	13	72	11	13	0	74	1.07
51493805--51493845	6	6.7	6	86	5	55	14	0	9	75	1.04
51493803--51493847	13	3.5	13	87	6	74	15	0	8	75	1.03
51493805--51493846	12	3.4	12	90	3	66	14	0	9	76	1.02
51493804--51493858	25	2.2	25	77	6	58	10	5	7	76	1.15
51496020--51496070	22	2.3	22	93	3	84	60	31	5	1	1.31
51496028--51496073	22	2.1	22	100	0	92	58	30	6	4	1.43
51501502--51501580	30	2.6	30	77	0	86	29	18	11	40	1.86
51501561--51501720	30	5.3	30	77	7	112	22	27	13	36	1.91
51514668--51515156	129	3.8	129	90	0	782	31	19	23	24	1.98
51515146--51515384	44	5.6	44	73	9	172	26	18	25	29	1.98
51515141--51515418	129	2.2	129	87	2	398	27	19	23	28	1.99
51522882--51523509	106	5.9	106	83	0	738	34	15	16	34	1.90
51541731--51541786	25	2.2	25	75	6	60	28	14	25	32	1.94
51541802--51541940	72	1.9	71	85	1	188	23	18	25	33	1.97
51544457--51544492	18	1.9	19	88	5	56	33	2	8	55	1.44
51545749--51545867	39	3.1	39	82	4	159	28	5	21	43	1.76
51545759--51545889	39	3.4	37	81	12	147	30	6	19	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51547202--51547255	24	2.3	23	81	6	65	14	3	11	70	1.29
51558218--51558303	41	2.1	42	91	2	138	26	20	29	23	1.99
51565407--51565515	41	2.6	41	95	1	191	26	21	29	22	1.99
51571621--51571657	12	3.2	12	85	7	51	29	0	0	70	0.88
51571592--51571661	37	1.9	35	82	5	86	25	2	1	70	1.10
51572538--51572615	27	2.8	29	83	15	101	55	2	3	38	1.32
51572538--51572697	9	17.0	9	67	10	88	56	3	2	37	1.31
51574360--51574407	18	2.6	19	78	12	55	58	0	4	37	1.18
51575240--51575305	31	2.1	32	86	10	93	18	1	18	62	1.41
51581057--51581561	47	10.7	47	93	0	823	28	29	8	32	1.88
51584301--51584419	25	4.8	25	71	8	93	36	19	24	20	1.95
51588663--51588691	14	2.0	15	93	6	51	34	10	0	55	1.34
51595638--51595707	26	2.7	26	78	12	72	60	4	2	32	1.31
51599688--51599809	37	3.3	37	76	15	144	38	31	13	16	1.88
51603927--51603967	9	4.6	9	90	0	64	41	24	9	24	1.85
51603927--51603967	18	2.3	18	100	0	82	41	24	9	24	1.85
51603974--51604023	26	2.0	26	84	4	66	26	2	6	66	1.26
51604056--51604098	5	8.0	5	85	14	59	4	0	55	39	1.20
51604051--51604119	18	3.9	18	81	9	72	8	1	47	42	1.43
51604751--51604883	43	3.1	43	84	3	151	29	16	23	30	1.96
51604770--51604884	43	2.7	44	86	2	153	29	17	23	29	1.97
51607781--51607890	41	2.6	42	81	7	125	23	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51610506--51611085	44	13.6	44	82	10	330	29	25	17	26	1.98
51610567--51611085	122	4.1	128	90	4	715	30	26	17	26	1.97
51610737--51610801	34	1.9	34	96	0	121	27	21	24	26	1.99
51610771--51611085	44	7.2	44	92	3	510	30	26	16	26	1.97
51611499--51611592	31	3.0	31	92	7	163	43	15	9	30	1.79
51611927--51612072	44	3.3	44	92	0	238	30	25	18	25	1.98
51614934--51614966	9	3.8	9	88	4	50	42	15	21	21	1.89
51616145--51616188	23	2.0	22	95	4	79	59	2	6	31	1.36
51616291--51616367	37	2.1	37	80	11	86	51	1	9	37	1.42
51616903--51616960	22	2.6	22	81	7	64	41	17	5	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230