genome.fa.s19.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  113  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32908325--32908520	51	3.9	51	77	5	218	29	28	17	23	1.97
32908332--32908516	101	1.8	102	90	3	302	30	28	17	23	1.97
32914175--32914204	16	1.9	15	93	6	51	46	6	0	46	1.29
32919231--32919285	27	2.1	26	86	3	74	60	5	3	30	1.37
32944130--32944432	40	7.6	40	90	2	396	24	20	28	27	1.99
32949732--32949780	16	2.9	17	79	14	57	40	2	2	55	1.23
32953818--32953868	9	5.4	10	77	11	54	25	0	1	72	0.95
32953818--32953868	19	2.7	19	81	6	59	25	0	1	72	0.95
32953802--32953859	11	5.5	11	73	8	50	29	0	3	67	1.07
32953818--32953896	28	2.9	27	82	3	77	27	2	3	65	1.22
32961903--32961950	17	2.7	18	74	9	53	72	4	8	14	1.23
32963711--32963776	31	2.1	31	91	0	105	50	0	6	43	1.27
32963726--32963784	16	3.8	16	69	13	59	49	0	6	44	1.29
32964587--32964664	39	2.0	39	97	0	147	41	14	12	32	1.83
32965014--32965046	17	1.9	17	93	0	57	36	6	0	57	1.23
32969340--32969418	40	1.9	41	84	5	106	22	26	26	24	2.00
32969447--32969489	15	2.8	15	80	16	52	20	0	25	53	1.46
32969583--32969610	10	2.8	10	100	0	56	50	0	7	42	1.30
32970113--32970430	96	3.3	96	91	2	507	38	17	1	41	1.61
32972543--32972594	15	3.2	15	73	19	50	44	0	1	53	1.11
32972622--32972663	16	2.6	16	85	11	59	42	0	0	57	0.99
32972677--32972735	17	3.1	18	72	27	59	44	1	0	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32972687--32972730	22	2.0	22	86	0	61	40	2	0	56	1.11
32978107--32978386	30	9.4	29	70	14	137	21	25	13	39	1.90
32978102--32978267	89	1.9	89	91	2	271	21	27	12	39	1.88
32978167--32978327	60	2.7	60	87	0	225	22	26	11	39	1.88
32978095--32978357	30	8.8	30	73	9	180	20	26	14	38	1.91
32978104--32978386	149	1.9	149	89	1	442	21	26	13	39	1.90
32981879--32981913	18	1.9	18	88	0	52	22	40	0	37	1.55
32987591--32987841	59	4.2	60	70	11	183	22	26	13	38	1.90
32987591--32987888	30	10.1	29	71	10	167	21	25	14	38	1.92
32987593--32987858	89	3.0	89	89	1	390	22	25	14	37	1.92
32998006--32998048	17	2.5	17	96	0	77	16	11	9	62	1.53
33001627--33001663	19	1.9	19	88	0	56	48	27	0	24	1.51
33019229--33019337	42	2.6	42	83	2	139	26	33	21	19	1.97
33020742--33020933	50	3.9	50	85	1	233	27	21	30	20	1.98
33025763--33025917	57	3.1	48	77	19	179	30	15	25	28	1.96
33025841--33025872	7	4.6	7	96	0	55	40	9	31	18	1.83
33025899--33025938	7	5.7	7	87	0	62	42	12	30	15	1.83
33025751--33025930	58	3.3	57	84	11	229	32	15	26	26	1.95
33040536--33040568	16	2.1	16	94	0	57	60	6	6	27	1.44
33040564--33040588	8	3.1	8	100	0	50	88	0	12	0	0.53
33042609--33042663	15	3.8	14	80	7	65	74	1	21	1	1.01
33047208--33047238	12	2.6	12	100	0	62	12	19	0	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33048831--33048891	20	3.0	20	81	9	54	27	16	27	27	1.97
33052948--33052981	18	1.9	18	88	5	52	8	35	2	52	1.47
33053064--33053095	15	2.1	16	94	5	57	6	21	0	71	1.07
33053998--33054050	24	2.2	24	83	6	63	5	13	3	77	1.09
33054029--33054102	13	5.3	13	72	19	60	14	5	6	72	1.23
33056113--33056149	6	6.2	6	93	0	56	37	27	0	35	1.57
33056137--33056202	26	2.5	27	80	11	75	13	24	0	62	1.31
33056155--33056199	20	2.2	20	84	4	54	8	26	0	64	1.23
33056960--33057037	32	2.3	35	77	20	94	8	10	2	78	1.06
33056969--33057038	32	2.2	32	87	5	108	10	10	2	77	1.10
33057081--33057126	13	3.5	13	85	5	56	19	4	2	73	1.10
33057092--33057126	14	2.6	14	95	4	63	25	5	0	68	1.11
33058387--33058447	20	3.0	20	81	9	54	27	16	27	27	1.97
33059128--33059153	13	2.0	13	100	0	52	0	15	0	84	0.62
33059206--33059239	14	2.5	14	90	4	52	11	2	5	79	1.02
33060487--33060603	55	2.1	55	82	4	148	23	25	16	34	1.95
33060791--33060855	23	2.9	22	88	4	94	46	18	12	23	1.82
33061076--33061110	13	2.7	13	90	0	52	42	11	0	45	1.40
33061632--33061687	24	2.4	23	72	3	58	21	3	33	41	1.70
33066201--33066259	16	3.8	16	79	14	61	20	3	1	74	1.05
33066535--33066590	24	2.4	23	72	3	58	21	3	33	41	1.70
33069839--33069893	15	3.8	14	80	7	65	74	1	21	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33075504--33075538	17	2.0	18	88	5	54	22	17	34	25	1.96
33076623--33076677	15	3.8	14	80	7	65	74	1	21	1	1.01
33078371--33078467	30	3.2	30	75	2	106	28	15	26	28	1.96
33080646--33080676	12	2.6	12	100	0	62	25	16	12	45	1.83
33080737--33080786	6	8.2	6	81	16	50	2	20	2	76	0.99
33080726--33080796	37	1.9	37	86	11	101	2	18	2	76	1.04
33080722--33080782	16	3.8	16	77	14	63	3	19	1	75	1.03
33081715--33081766	11	5.0	10	80	15	61	9	7	5	76	1.14
33081716--33081754	20	2.0	20	90	10	62	5	7	5	82	0.96
33083499--33083595	30	3.2	30	75	2	106	28	15	26	28	1.96
33087371--33087440	21	3.4	19	83	11	68	70	4	12	12	1.32
33088987--33089051	20	3.3	19	73	16	51	38	16	21	23	1.93
33090317--33090350	18	1.9	18	88	5	52	8	35	2	52	1.47
33090433--33090464	15	2.1	16	94	5	57	6	21	0	71	1.07
33091418--33091492	12	5.7	13	74	20	50	17	6	2	73	1.17
33091430--33091481	14	3.5	14	76	19	52	17	5	3	73	1.19
33093112--33093176	20	3.3	19	73	16	51	38	16	21	23	1.93
33106032--33106070	13	3.0	13	100	0	78	76	0	7	15	0.99
33108066--33108112	20	2.3	20	92	0	76	25	34	17	23	1.96
33108077--33108114	10	3.8	10	83	13	51	28	28	15	26	1.96
33109727--33109769	22	2.0	22	86	4	61	58	2	25	13	1.48
33109793--33109835	20	2.2	20	86	0	59	53	2	30	13	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33113447--33113485	19	2.1	19	85	4	53	5	23	2	69	1.21
33126224--33126286	33	1.9	33	84	12	85	12	25	6	55	1.60
33126303--33126365	13	4.6	13	75	21	58	12	17	0	69	1.18
33128861--33128914	20	2.7	20	82	0	63	24	20	18	37	1.94
33128861--33128934	30	2.5	30	86	8	98	21	20	18	39	1.93
33128861--33128925	20	3.2	20	71	16	53	23	21	16	38	1.93
33130516--33130579	14	4.4	14	79	12	76	76	4	4	14	1.11
33130559--33130592	12	2.8	12	86	0	50	79	2	5	11	1.02
33130516--33130636	14	8.4	14	70	17	52	72	5	9	12	1.26
33130571--33130643	28	2.6	28	83	10	94	71	5	13	9	1.30
33131549--33131580	15	2.1	16	94	5	57	71	0	21	6	1.07
33131663--33131696	18	1.9	18	88	5	52	52	2	35	8	1.47
33132962--33133015	20	2.7	20	82	0	63	24	20	18	37	1.94
33132962--33133035	30	2.5	30	86	8	98	21	20	18	39	1.93
33132962--33133026	20	3.2	20	71	16	53	23	21	16	38	1.93
33135092--33135145	20	2.7	20	82	0	63	24	20	18	37	1.94
33136749--33136813	14	4.5	14	80	12	78	76	4	4	13	1.10
33136793--33136826	12	2.8	12	86	0	50	79	2	5	11	1.02
33136749--33136870	14	8.4	14	71	17	54	72	5	9	12	1.25
33136805--33136877	28	2.6	28	83	10	94	71	5	13	9	1.30
33137783--33137814	15	2.1	16	94	5	57	71	0	21	6	1.07
33137897--33137930	18	1.9	18	88	5	52	52	2	35	8	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33139197--33139250	20	2.7	20	82	0	63	24	20	18	37	1.94
33139197--33139270	30	2.5	30	86	8	98	21	20	18	39	1.93
33139197--33139261	20	3.2	20	71	16	53	23	21	16	38	1.93
33141327--33141380	20	2.7	20	82	0	63	24	20	18	37	1.94
33143457--33143510	20	2.7	20	82	0	63	24	20	18	37	1.94
33145587--33145640	20	2.7	20	82	0	63	24	20	18	37	1.94
33147256--33147311	12	4.7	12	82	6	69	78	3	5	12	1.05
33147256--33147311	24	2.3	24	87	6	78	78	3	5	12	1.05
33147266--33147315	13	3.9	13	87	10	68	74	2	8	16	1.15
33148477--33148510	18	1.9	18	88	5	52	52	2	35	8	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230