genome.fa.s19.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  177  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52919526--52919571	8	5.1	9	82	12	51	56	0	0	43	0.99
52921339--52921368	16	1.9	15	93	6	51	46	20	0	33	1.51
52925454--52925480	5	5.4	5	100	0	54	18	0	0	81	0.69
52927309--52927350	21	2.1	19	83	16	50	42	0	14	42	1.45
52928356--52928390	15	2.3	15	95	0	61	65	11	0	22	1.24
52928407--52928449	23	1.9	22	85	4	59	67	6	2	23	1.27
52928810--52928853	23	2.0	22	90	4	70	61	4	0	34	1.16
52930644--52930669	2	13.0	2	100	0	52	50	0	0	50	1.00
52930685--52930737	16	3.4	15	75	17	54	33	0	0	66	0.92
52930822--52930854	18	1.9	17	88	11	50	57	9	3	30	1.45
52931287--52931367	31	2.7	29	79	12	74	46	0	3	49	1.19
52941810--52941838	13	2.1	14	93	6	51	27	6	6	58	1.50
52949605--52949635	16	1.9	16	100	0	62	58	6	0	35	1.24
52949621--52949708	37	2.3	38	82	9	106	53	6	2	37	1.40
52954514--52954552	17	2.3	17	86	8	53	48	0	2	48	1.15
52954892--52954928	12	2.8	14	80	16	51	51	0	13	35	1.41
52964748--52964779	16	1.9	17	93	6	57	37	21	0	40	1.54
52964941--52965053	41	2.7	42	84	5	140	30	29	17	23	1.97
52964941--52965097	43	3.7	42	74	16	146	30	28	17	22	1.97
52964941--52965096	84	1.9	83	81	12	194	30	28	17	23	1.97
52972183--52972214	16	1.9	17	93	6	57	37	21	0	40	1.54
52972376--52972531	84	1.9	84	84	10	212	30	29	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52972376--52972532	43	3.7	42	77	14	171	29	29	18	22	1.97
52974258--52974293	15	2.5	15	95	4	65	27	5	13	52	1.63
52985002--52985037	15	2.4	15	95	0	63	30	8	25	36	1.85
52989702--52989750	22	2.3	22	89	3	82	38	8	26	26	1.84
52990084--52990108	13	1.9	13	100	0	50	16	0	24	60	1.36
52996050--52996082	11	3.1	11	91	8	59	27	0	39	33	1.57
52996507--52996587	26	3.1	26	80	7	67	18	18	20	41	1.90
53003264--53003417	26	6.1	25	76	8	136	16	22	22	37	1.94
53003298--53003425	24	5.2	24	75	12	91	19	24	21	34	1.96
53003276--53003416	49	2.8	50	76	7	142	17	24	21	36	1.95
53003334--53003481	73	2.0	72	81	8	167	19	23	20	35	1.96
53004259--53004299	13	3.2	13	100	0	82	39	7	7	46	1.60
53020601--53020673	32	2.3	32	92	0	128	23	30	2	43	1.67
53022558--53022702	28	5.2	28	85	2	168	33	23	20	22	1.97
53022811--53022858	26	1.9	24	90	0	60	37	27	20	14	1.92
53023012--53023743	27	27.2	26	79	5	319	19	19	18	42	1.89
53023028--53023743	161	4.4	161	81	6	693	19	18	18	42	1.89
53028041--53028144	39	2.6	41	93	6	162	30	15	17	36	1.91
53028055--53028144	39	2.3	39	100	0	180	30	17	15	36	1.91
53028173--53028227	16	3.4	16	69	18	51	23	29	0	47	1.52
53028154--53028228	32	2.3	32	93	0	123	24	28	1	46	1.60
53030707--53030737	7	4.6	7	96	4	55	0	0	58	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53055422--53055523	30	3.4	30	76	0	87	21	24	12	41	1.88
53059424--53059448	11	2.3	11	100	0	50	8	16	0	76	1.02
53064141--53064182	17	2.5	17	96	0	75	33	0	2	64	1.07
53064344--53064484	59	2.4	58	79	10	171	24	19	7	48	1.75
53064581--53064624	7	6.3	7	89	10	72	29	11	29	29	1.92
53064903--53065054	59	2.6	59	80	7	166	52	9	13	23	1.70
53067076--53067118	16	2.6	17	82	7	54	53	4	0	41	1.21
53070789--53070963	23	7.6	23	80	0	143	45	21	13	18	1.84
53070790--53070963	69	2.5	69	79	3	181	45	21	13	18	1.84
53073319--53073371	22	2.4	21	81	12	61	71	0	24	3	1.02
53088104--53088148	21	2.1	21	95	0	81	26	24	13	35	1.92
53088316--53088350	17	2.1	17	100	0	70	28	17	31	22	1.96
53088904--53088938	12	2.9	12	100	0	70	8	17	0	74	1.06
53090696--53090735	19	2.0	20	85	4	55	37	12	2	47	1.55
53091446--53091513	33	2.1	33	97	0	127	32	17	16	33	1.92
53092957--53093014	25	2.3	25	87	3	89	22	43	12	22	1.86
53097378--53097417	18	2.2	18	86	0	53	27	2	5	65	1.27
53110493--53110531	19	2.1	19	100	0	78	25	25	10	38	1.87
53111059--53111091	14	2.4	14	94	0	57	51	6	27	15	1.66
53115613--53115768	25	6.2	24	72	8	107	31	20	27	20	1.97
53115677--53115791	50	2.3	50	85	5	160	35	20	25	19	1.95
53123561--53123682	36	3.4	36	81	1	120	41	31	11	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53123578--53123682	36	2.9	36	82	1	122	40	30	12	16	1.85
53137165--53137194	14	2.1	15	93	6	53	46	0	0	53	1.00
53137646--53138056	155	2.7	153	90	3	646	33	15	21	29	1.94
53139726--53139765	16	2.5	16	91	0	62	37	7	25	30	1.83
53149769--53149984	51	4.3	50	91	2	342	27	25	15	31	1.95
53154442--53154466	11	2.3	11	100	0	50	56	0	0	44	0.99
53155057--53155105	20	2.5	19	80	6	62	32	6	8	53	1.55
53157700--53157732	16	2.1	16	88	5	50	69	0	0	30	0.88
53157395--53157924	191	2.7	194	78	5	561	42	9	16	31	1.80
53157952--53158020	34	2.0	34	100	0	138	40	11	14	33	1.82
53168123--53168169	20	2.3	20	81	0	58	17	25	34	23	1.96
53168250--53168298	25	2.0	25	83	0	62	18	36	20	24	1.94
53172093--53172276	71	2.6	71	84	5	241	28	18	22	30	1.97
53172061--53172274	69	3.1	71	80	8	242	28	17	21	31	1.96
53178207--53178301	42	2.3	41	87	1	136	25	22	22	30	1.99
53186562--53186769	31	6.7	31	88	0	301	44	17	8	29	1.78
53190331--53190416	27	3.2	27	81	6	95	19	15	20	44	1.87
53197183--53197256	26	2.8	27	83	2	96	20	16	21	41	1.90
53197183--53197280	27	3.7	27	81	6	103	20	16	22	40	1.91
53203489--53203653	31	5.3	31	87	0	231	44	15	9	30	1.78
53203478--53203649	93	1.9	92	88	1	263	44	15	8	30	1.77
53206986--53207022	19	1.9	19	100	0	74	45	5	10	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53207444--53207514	34	2.1	34	91	0	115	33	12	5	47	1.65
53209119--53209275	77	2.0	77	90	0	242	29	15	10	44	1.79
53211662--53211686	13	1.9	13	100	0	50	84	0	0	16	0.63
53218545--53218614	27	2.5	28	80	15	90	50	17	2	30	1.60
53218545--53218676	29	4.5	31	72	15	93	46	18	5	30	1.71
53218545--53218637	29	3.3	29	78	14	95	48	20	2	29	1.61
53219183--53219224	20	2.3	19	88	12	61	28	0	4	66	1.12
53221674--53221736	18	3.5	18	77	18	60	26	3	0	69	1.03
53221676--53221735	15	3.9	14	73	26	50	28	1	0	70	0.97
53223678--53224057	50	7.6	49	65	10	196	26	21	20	31	1.98
53223601--53224109	100	5.1	100	84	1	619	25	23	20	30	1.98
53224034--53224167	50	2.7	50	95	0	232	19	28	23	29	1.98
53223624--53224168	200	2.7	197	80	6	497	24	23	21	30	1.99
53224248--53224354	50	2.1	48	77	9	106	28	25	20	26	1.99
53224375--53224513	44	3.1	44	71	8	120	28	29	18	23	1.98
53224361--53224533	88	2.0	88	88	0	256	26	27	20	25	1.99
53238150--53238242	29	3.3	29	76	14	86	48	20	3	27	1.65
53238786--53238827	20	2.3	19	88	12	61	28	0	4	66	1.12
53251452--53251513	18	3.4	19	80	6	67	30	1	0	67	1.00
53280343--53280400	28	2.1	28	84	12	75	55	5	0	39	1.22
53283758--53284216	44	10.5	44	68	11	253	31	20	23	23	1.98
53283733--53284327	132	4.5	132	90	1	892	31	21	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53286357--53286403	19	2.3	21	86	13	64	38	4	4	53	1.40
53288958--53288993	15	2.4	16	90	9	58	72	2	0	25	0.98
53288989--53289105	30	3.9	29	80	7	119	30	21	3	44	1.69
53289319--53289376	20	3.0	20	75	9	59	62	0	37	0	0.96
53289395--53289437	18	2.5	17	78	14	52	23	32	44	0	1.54
53289455--53289523	3	24.0	3	85	5	90	71	0	28	0	0.87
53289459--53289533	6	12.3	6	88	7	62	73	0	26	0	0.84
53289577--53289619	18	2.4	18	92	0	68	18	46	27	6	1.75
53289639--53289695	25	2.3	24	77	19	64	77	7	10	5	1.12
53290406--53290643	17	13.3	18	72	15	140	27	10	10	52	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230