genome.fa.s19.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  219  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64955663--64955880	109	2.0	109	92	0	364	26	17	22	33	1.96
64956301--64956406	44	2.4	44	82	3	124	31	16	26	25	1.97
64956339--64956438	44	2.3	44	82	6	114	28	15	26	31	1.95
64956595--64956723	42	3.0	43	76	11	120	32	17	22	27	1.96
64958525--64958674	58	2.5	58	77	5	140	32	8	5	54	1.52
64958684--64958723	16	2.5	16	88	8	55	37	7	2	52	1.43
64958684--64958746	18	3.6	17	78	4	56	36	9	3	50	1.51
64959546--64959761	29	7.3	30	80	3	233	35	20	3	40	1.70
64959546--64959739	59	3.3	59	92	0	298	34	20	4	41	1.71
64960607--64960655	21	2.3	20	83	10	62	36	2	0	61	1.08
64960768--64960806	20	1.9	20	89	5	60	35	15	7	41	1.76
64960770--64961296	18	29.3	17	69	19	236	31	12	10	46	1.74
64960770--64961297	35	14.6	36	71	13	148	31	12	10	46	1.74
64960914--64961120	53	3.9	51	76	9	191	30	9	8	51	1.64
64967409--64968314	78	11.7	78	85	5	1151	27	17	19	35	1.94
64967415--64968314	308	2.9	306	90	2	1363	27	17	19	35	1.94
64968561--64968727	59	2.8	59	81	6	212	35	20	3	40	1.70
64968561--64968728	29	5.7	29	81	7	187	35	20	3	40	1.70
64969053--64969125	10	7.7	10	71	11	55	69	0	30	0	0.88
64969058--64969102	18	2.5	18	100	0	90	73	0	26	0	0.84
64969057--64969112	18	3.4	17	76	19	64	67	0	32	0	0.91
64969232--64969269	18	2.1	18	90	0	58	78	5	13	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64969415--64969450	9	4.1	9	92	3	56	83	0	16	0	0.65
64969412--64969450	18	2.2	19	90	9	64	82	0	17	0	0.68
64969614--64969657	22	2.0	22	86	4	63	36	2	0	61	1.09
64969768--64970290	17	29.5	17	70	17	237	31	11	9	47	1.72
64969791--64969828	16	2.3	17	86	4	51	31	15	13	39	1.86
64969771--64970290	35	14.7	35	71	14	268	31	11	9	47	1.72
64969768--64970373	17	34.3	17	69	16	184	31	11	9	47	1.73
64972230--64972281	19	2.7	20	76	5	63	36	0	3	59	1.16
64973081--64973115	17	2.1	17	89	10	54	25	2	0	71	1.00
64977767--64977837	21	3.0	24	74	17	69	40	1	1	56	1.17
64978123--64978182	31	1.9	31	86	0	84	26	15	13	45	1.83
64994133--64994202	11	6.4	11	80	3	79	82	1	11	4	0.86
64994137--64994201	12	5.2	12	78	12	60	84	1	9	4	0.82
64994133--64994202	21	3.2	20	78	15	68	82	1	11	4	0.86
64994133--64994195	8	7.0	9	77	12	51	84	1	11	3	0.81
64994136--64994204	33	2.1	34	86	2	95	81	1	13	4	0.91
64995693--64996316	45	13.5	46	75	12	519	27	16	24	32	1.96
64995823--64995854	17	1.9	17	93	6	57	18	28	12	40	1.87
64995729--64995945	108	2.0	109	90	2	339	26	17	22	33	1.96
64995837--64996294	184	2.6	181	86	5	612	27	15	25	32	1.95
64995837--64996297	46	10.2	44	80	8	400	26	15	25	32	1.95
64996350--64996451	43	2.4	43	79	9	104	32	15	27	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64996377--64996460	43	2.0	42	81	11	100	27	16	26	29	1.97
64999487--64999660	26	6.5	26	72	9	118	36	20	4	39	1.71
64999510--64999660	51	2.8	53	88	6	207	36	18	3	41	1.69
65000505--65000550	21	2.2	21	84	7	58	36	2	0	60	1.09
65000663--65000704	18	2.4	17	81	14	50	40	14	7	38	1.73
65000814--65000942	50	2.5	52	83	5	165	31	9	11	48	1.71
65000663--65001161	16	29.5	16	69	16	201	30	13	10	45	1.76
65000663--65001154	34	14.5	35	69	17	145	29	13	10	46	1.76
65007214--65008118	78	11.7	78	85	5	1142	27	17	19	35	1.94
65007220--65008118	307	2.9	306	90	2	1354	27	17	19	35	1.94
65007213--65008152	229	4.1	232	82	7	1146	26	17	19	36	1.94
65008363--65008523	29	5.5	29	80	6	173	36	19	3	41	1.67
65008363--65008518	58	2.6	59	83	4	199	37	19	2	41	1.65
65008857--65008900	17	2.5	18	92	7	81	72	0	27	0	0.85
65008875--65008922	13	3.9	12	74	15	53	68	0	31	0	0.90
65009028--65009065	18	2.1	18	90	0	58	78	5	13	2	1.02
65009209--65009247	9	4.3	9	87	9	53	82	0	17	0	0.68
65009196--65009244	19	2.6	19	87	6	64	79	0	20	0	0.73
65009411--65009454	22	2.0	22	86	4	63	36	2	0	61	1.09
65009565--65010093	18	29.5	18	70	17	241	32	11	9	46	1.72
65009590--65009627	16	2.3	17	86	4	51	31	15	13	39	1.86
65009565--65010175	35	17.1	35	72	12	354	31	11	9	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65009853--65010092	73	3.4	69	77	8	196	32	10	10	46	1.73
65010036--65010143	54	2.0	54	80	10	123	31	11	12	45	1.76
65009633--65010175	17	30.8	17	70	14	203	31	11	9	47	1.72
65012027--65012078	19	2.7	20	76	5	63	36	0	3	59	1.16
65012882--65012915	17	2.0	17	88	11	52	26	2	0	70	1.01
65017569--65017640	21	3.0	24	73	19	62	41	1	1	55	1.17
65017929--65017988	31	1.9	31	86	0	84	26	15	13	45	1.83
65025402--65025463	24	2.7	23	82	2	61	27	17	29	25	1.98
65025788--65025817	10	2.8	11	90	10	53	36	26	0	36	1.57
65035250--65035318	29	2.4	28	85	7	86	42	0	2	55	1.15
65035279--65035331	28	1.9	28	84	3	72	41	1	0	56	1.10
65035327--65035363	14	2.4	16	86	13	51	62	0	0	37	0.96
65036440--65036485	20	2.3	20	92	0	74	36	15	0	47	1.45
65036448--65036490	20	2.2	20	91	0	68	34	18	2	44	1.63
65036456--65036499	20	2.2	20	87	0	61	36	13	4	45	1.64
65042325--65042368	14	2.8	16	80	16	56	54	0	0	45	0.99
65043264--65043308	23	2.0	23	95	0	81	42	20	8	28	1.82
65052287--65052351	31	2.1	31	88	5	96	40	10	13	35	1.80
65054431--65054489	32	1.9	32	89	6	95	35	3	5	55	1.38
65061182--65061437	44	5.7	44	69	15	193	28	19	23	28	1.98
65061228--65061534	96	3.3	94	76	12	328	29	17	23	29	1.97
65061181--65061630	181	2.5	181	89	1	650	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65061549--65061862	44	6.8	48	76	11	201	35	18	19	26	1.95
65061591--65061854	49	5.7	45	78	6	217	35	18	19	26	1.95
65061549--65061816	49	5.7	47	74	9	149	36	18	19	26	1.94
65061545--65061905	139	2.6	138	81	3	422	36	18	18	26	1.94
65063659--65063741	3	27.3	3	71	7	51	28	9	3	57	1.47
65063674--65063736	24	2.6	24	85	5	74	28	9	4	57	1.51
65069795--65070031	122	2.0	121	94	3	426	32	8	13	44	1.75
65072484--65072529	23	2.0	22	88	12	67	60	4	0	34	1.16
65072484--65072529	22	2.0	23	88	12	69	60	4	0	34	1.16
65072932--65072973	15	2.9	15	86	13	54	16	2	0	80	0.81
65073709--65073763	17	3.2	17	92	2	83	12	30	40	16	1.86
65073709--65073774	17	3.8	18	85	2	73	13	30	39	16	1.87
65080195--65080229	13	2.8	12	87	8	52	80	0	17	2	0.84
65081203--65081386	99	1.9	99	93	2	316	34	10	17	36	1.84
65081475--65081520	16	2.8	16	83	6	56	58	2	4	34	1.30
65083785--65083927	57	2.4	57	82	9	171	29	19	26	24	1.98
65084001--65084131	67	2.0	67	96	0	244	20	17	33	28	1.95
65091440--65091507	34	2.0	34	100	0	136	41	23	14	20	1.89
65092684--65092746	30	2.1	30	90	0	99	55	14	4	25	1.58
65099361--65099418	31	1.9	30	89	3	89	41	12	17	29	1.85
65103746--65103825	31	2.5	31	83	2	97	47	16	8	27	1.76
65123636--65123696	18	3.4	16	74	17	50	63	1	11	22	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65134966--65135021	15	3.9	14	77	11	51	64	1	1	32	1.14
65144777--65144843	28	2.4	29	85	5	77	23	14	11	49	1.77
65144794--65144850	28	2.0	28	96	0	105	24	14	15	45	1.83
65152963--65153003	11	3.7	11	81	18	50	29	0	4	65	1.13
65155718--65155907	95	2.0	95	95	2	346	43	17	16	22	1.87
65173350--65173398	25	1.9	26	84	12	66	51	14	4	30	1.61
65173831--65173863	17	1.9	17	88	11	50	45	0	0	54	0.99
65173972--65174014	21	2.0	21	86	9	59	58	2	2	37	1.24
65181067--65181126	25	2.3	26	81	16	72	6	1	36	55	1.36
65181077--65181135	16	3.6	16	77	6	57	10	1	35	52	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230