genome.fa.s19.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  160  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47368241--47368309	29	2.4	29	83	7	88	36	7	10	46	1.65
47380447--47380556	47	2.3	47	88	0	157	29	13	20	36	1.91
47385414--47385557	27	5.3	27	82	1	146	34	15	17	32	1.91
47385418--47385557	54	2.6	54	87	2	174	34	15	17	33	1.90
47394074--47394466	197	2.0	194	96	2	725	33	14	19	32	1.92
47396525--47396573	19	2.5	19	86	3	62	51	0	22	26	1.49
47405013--47405130	54	2.2	54	81	3	130	29	24	27	17	1.97
47407258--47407347	4	22.5	4	95	0	135	5	50	0	44	1.25
47407258--47407355	22	4.5	22	93	1	135	6	48	0	44	1.27
47407519--47407567	24	2.0	24	88	0	71	14	14	12	59	1.62
47409470--47409654	89	2.1	89	79	6	196	35	21	7	35	1.82
47409738--47409825	9	9.7	9	71	11	54	67	3	2	27	1.19
47409721--47409806	19	4.5	19	80	4	93	66	3	2	27	1.20
47410053--47410130	25	3.1	25	69	20	65	33	3	0	62	1.13
47410118--47410166	19	2.6	19	84	9	57	36	2	0	61	1.08
47410193--47410398	91	2.3	90	79	6	225	34	10	17	36	1.84
47411050--47411099	17	2.8	18	75	6	57	6	12	8	74	1.22
47416658--47416834	92	1.9	95	83	8	236	31	5	6	57	1.47
47416687--47416853	87	1.9	89	82	9	214	30	7	5	56	1.49
47419269--47419309	20	2.0	20	95	0	73	58	9	7	24	1.55
47419569--47419624	21	2.7	21	82	0	67	28	10	33	26	1.90
47420011--47420052	14	3.0	14	76	13	50	35	7	16	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47423948--47423991	6	7.2	6	84	5	61	38	0	59	2	1.10
47424867--47424900	17	2.0	17	100	0	68	52	11	5	29	1.61
47427749--47427780	14	2.4	14	94	5	57	59	18	9	12	1.59
47428375--47428527	81	1.9	81	91	1	254	26	19	5	49	1.69
47431343--47431383	21	1.9	23	85	14	61	51	0	4	43	1.23
47434833--47434880	24	2.0	24	87	0	69	18	12	18	50	1.78
47435087--47435128	12	3.6	12	77	6	50	23	14	21	40	1.90
47435087--47435150	23	2.8	23	85	4	85	29	12	18	39	1.88
47437317--47437350	18	1.9	18	88	5	52	50	0	14	35	1.44
47438287--47438362	39	1.9	39	86	0	107	35	15	31	17	1.91
47438296--47438372	39	2.0	39	82	5	93	38	16	27	16	1.91
47449292--47449334	22	2.0	22	85	0	59	25	18	34	20	1.96
47458356--47458417	25	2.4	26	80	15	67	40	8	20	30	1.82
47462383--47462438	15	3.7	15	71	7	51	53	0	1	44	1.11
47462874--47462922	24	2.0	24	96	0	89	40	10	8	40	1.69
47467312--47467393	34	2.4	34	84	10	105	26	20	26	25	1.99
47474867--47474931	34	1.9	34	90	0	103	32	20	24	23	1.98
47480728--47481234	251	2.0	251	97	0	960	37	12	17	31	1.87
47482686--47482749	13	4.9	13	92	0	101	26	9	25	39	1.86
47489917--47489997	11	7.3	11	69	8	56	38	43	4	13	1.66
47491855--47492181	27	12.1	27	83	3	374	18	14	24	41	1.88
47505798--47505841	22	2.0	23	86	4	63	54	6	0	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47511501--47511735	29	8.2	28	72	8	154	22	16	22	38	1.93
47514155--47514201	23	1.9	26	87	12	73	40	0	21	38	1.53
47520632--47520670	18	2.0	20	85	9	55	28	12	10	48	1.74
47522804--47522878	33	2.3	33	88	0	105	56	4	2	37	1.32
47523675--47523708	12	2.8	12	90	0	50	67	0	0	32	0.91
47535763--47535794	16	2.0	16	100	0	64	56	12	0	31	1.37
47536152--47536279	45	3.1	41	85	10	156	11	19	19	49	1.79
47540275--47540483	50	4.2	51	73	9	171	37	20	20	22	1.95
47541734--47541788	29	2.0	27	85	7	74	41	1	21	34	1.64
47546505--47546535	9	3.4	9	90	0	53	25	12	22	38	1.90
47546589--47546625	9	4.1	9	92	0	65	45	13	10	29	1.77
47546677--47546733	30	1.9	30	89	3	89	19	42	0	38	1.51
47547636--47547661	5	5.2	5	100	0	52	19	19	19	42	1.90
47551229--47551268	21	1.9	21	84	0	53	70	7	5	17	1.30
47552374--47552443	25	2.7	25	86	6	95	41	8	0	50	1.33
47552490--47552557	22	3.2	20	79	16	66	70	0	29	0	0.87
47552490--47552584	25	4.0	25	77	17	87	70	0	29	0	0.87
47552510--47552587	31	2.5	32	83	8	108	69	0	30	0	0.89
47552508--47552608	21	4.7	22	73	16	77	67	0	32	0	0.91
47552553--47552611	24	2.3	24	82	8	73	69	0	30	0	0.89
47552487--47552616	36	3.6	37	73	12	103	69	0	30	0	0.89
47553143--47553172	16	1.9	15	93	6	51	70	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47556011--47556069	12	5.3	11	75	17	50	30	1	3	64	1.20
47562334--47562358	2	12.5	2	100	0	50	48	0	52	0	1.00
47565835--47565890	25	2.2	25	96	0	103	57	0	3	39	1.16
47566214--47566387	82	2.1	84	95	4	316	24	20	4	50	1.67
47567645--47567687	11	3.8	11	82	17	61	62	2	2	32	1.20
47567641--47567684	23	1.9	23	95	0	79	59	4	2	34	1.30
47569615--47569653	18	2.2	17	86	13	53	33	0	20	46	1.51
47569882--47570000	23	5.2	23	84	9	145	21	18	27	32	1.96
47569879--47570000	46	2.7	46	89	2	183	21	18	27	32	1.97
47572140--47572572	232	1.9	233	87	0	643	38	10	19	30	1.86
47575282--47575351	30	2.3	30	95	0	131	28	25	22	22	1.99
47575296--47575354	18	3.6	18	70	25	67	28	23	20	27	1.99
47575484--47575561	38	2.0	39	90	7	124	51	24	2	21	1.60
47575692--47575757	17	3.7	17	73	11	69	33	3	15	48	1.60
47575689--47575760	37	1.9	37	94	0	126	34	2	15	47	1.60
47576958--47576991	15	2.3	15	89	0	50	41	5	14	38	1.70
47577027--47577105	13	6.0	13	88	2	113	56	8	1	32	1.38
47577747--47577772	3	8.7	3	100	0	52	69	0	0	30	0.89
47583652--47583830	38	4.7	38	81	1	216	15	20	27	36	1.93
47583696--47583896	38	5.1	41	74	13	111	14	17	28	39	1.89
47590284--47590496	62	3.5	62	87	0	302	25	29	22	23	1.99
47590394--47590592	110	1.8	109	85	4	283	25	29	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47592589--47592650	24	2.7	22	72	13	63	58	1	9	30	1.40
47596104--47596181	26	3.0	26	96	0	147	28	2	26	42	1.69
47598013--47598906	44	20.7	44	72	15	456	26	22	20	29	1.98
47598022--47598918	216	4.2	217	93	1	1509	26	22	20	29	1.99
47598022--47598918	430	2.1	431	92	1	1505	26	22	20	29	1.99
47613568--47613857	47	6.2	47	97	0	526	32	8	29	30	1.86
47613967--47614045	37	2.1	37	88	4	115	25	18	30	25	1.98
47619039--47619116	33	2.4	33	97	0	147	48	21	2	26	1.63
47622286--47622332	21	2.2	22	92	3	78	21	19	38	21	1.94
47632744--47632791	24	2.0	25	91	4	80	68	12	8	10	1.39
47640884--47641110	41	5.5	41	83	6	248	33	17	27	20	1.95
47640884--47641110	82	2.8	82	85	5	298	33	17	27	20	1.95
47640880--47641113	123	1.9	123	86	6	332	34	17	28	20	1.95
47641007--47641113	21	5.2	21	68	4	74	31	18	30	18	1.95
47647158--47647298	50	2.8	50	90	0	210	21	31	21	25	1.98
47651198--47651442	41	6.0	41	79	0	204	35	14	29	21	1.93
47651198--47651442	82	3.0	82	72	3	233	35	14	29	21	1.93
47660330--47660372	22	2.0	22	95	0	77	39	23	23	13	1.90
47660725--47660768	16	2.8	16	85	0	61	27	11	25	36	1.90
47660896--47661065	27	6.3	27	78	5	164	26	22	18	32	1.97
47660865--47661053	81	2.3	81	84	1	227	25	21	19	33	1.97
47668230--47668348	45	2.6	45	80	2	132	41	12	20	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47671304--47671331	10	2.8	10	100	0	56	39	10	10	39	1.75
47672021--47672064	21	2.1	21	83	8	54	63	2	9	25	1.35
47686766--47686834	34	2.0	34	97	0	129	24	11	27	36	1.90
47687491--47687530	21	1.9	21	84	0	53	20	20	35	25	1.96
47697715--47697761	22	2.3	19	85	14	58	44	2	0	53	1.12
47697717--47697758	16	2.7	15	79	20	50	45	2	0	52	1.13
47705246--47705301	12	4.7	12	95	0	103	41	7	0	51	1.29
47721036--47721079	20	2.2	20	83	0	52	27	29	13	29	1.94
47722581--47722630	16	3.2	15	80	8	55	62	4	12	22	1.46
47722591--47722649	17	3.5	17	81	6	75	61	5	10	23	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230