genome.fa.s19.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  217  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64418786--64418835	19	2.6	20	75	18	52	66	4	0	30	1.10
64418771--64418833	28	2.1	29	85	8	83	63	4	0	31	1.15
64419459--64419488	2	15.0	2	92	0	51	53	0	46	0	1.00
64424681--64424718	18	2.2	18	85	4	51	65	7	15	10	1.45
64425795--64425838	23	1.9	23	90	0	70	36	15	0	47	1.46
64425885--64425937	4	13.8	4	78	7	56	22	3	1	71	1.12
64425879--64425943	26	2.5	26	82	2	85	21	3	3	72	1.12
64426067--64426370	110	2.8	109	88	2	425	28	16	19	34	1.94
64430475--64430514	9	4.2	10	87	12	66	82	7	0	10	0.84
64430467--64430514	19	2.6	18	90	3	60	83	6	2	8	0.88
64430475--64430514	18	2.2	19	95	4	73	82	7	0	10	0.84
64432613--64432922	46	6.8	46	91	0	471	25	13	28	32	1.94
64433037--64433768	44	16.6	44	64	19	226	30	18	25	26	1.98
64432935--64433768	132	6.3	132	96	0	1492	30	18	24	26	1.98
64434411--64434448	18	2.1	18	85	9	51	65	7	15	10	1.45
64435525--64435568	23	1.9	23	90	0	70	36	15	0	47	1.46
64435621--64435677	4	14.8	4	80	7	64	22	3	1	71	1.10
64435604--64435683	34	2.3	34	81	10	108	21	2	3	72	1.12
64435807--64436123	110	2.9	109	86	3	408	29	17	18	34	1.94
64436762--64437935	298	3.9	295	80	7	1117	39	9	14	36	1.78
64441076--64441105	2	15.5	2	93	6	53	50	0	0	50	1.00
64442506--64442539	18	1.9	18	88	5	52	35	0	5	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64453130--64454155	533	1.9	533	88	4	1568	43	14	6	36	1.70
64457967--64458362	180	2.2	181	86	0	551	32	16	19	31	1.94
64460240--64460645	26	16.1	25	70	16	200	29	6	3	60	1.40
64460456--64460645	50	3.9	48	79	12	176	28	6	3	62	1.35
64460536--64460607	24	3.1	23	69	16	58	29	5	1	63	1.25
64460423--64460659	97	2.4	97	82	11	257	29	5	3	61	1.35
64465115--64465175	28	2.3	27	83	16	74	45	1	0	52	1.10
64466645--64466754	54	2.0	55	94	1	195	58	9	0	32	1.30
64470353--64470392	17	2.5	15	88	8	53	55	0	0	45	0.99
64473821--64473881	28	2.3	27	83	16	74	45	1	0	52	1.10
64476542--64476579	2	19.0	2	100	0	76	0	50	0	50	1.00
64480608--64480867	45	6.0	43	85	5	301	26	15	23	35	1.94
64480618--64480905	45	6.6	42	83	7	231	25	14	24	35	1.93
64480607--64480905	85	3.4	87	85	5	356	26	14	23	35	1.93
64483688--64483759	36	2.0	36	100	0	144	33	25	5	36	1.79
64488092--64488134	22	2.0	22	90	0	68	48	13	9	27	1.73
64491059--64491106	6	8.0	6	100	0	96	33	0	0	66	0.92
64491217--64491295	36	2.1	37	88	4	115	43	0	3	53	1.19
64502247--64502323	38	2.0	38	97	0	145	38	15	5	40	1.70
64506030--64506103	26	2.6	30	79	16	102	41	6	16	35	1.74
64506693--64506738	24	1.9	24	82	8	58	41	2	4	52	1.33
64513032--64513093	32	2.0	31	96	3	115	41	8	12	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64514707--64514797	45	2.0	45	95	0	164	27	12	25	35	1.91
64528779--64528846	34	2.0	34	85	5	93	30	23	25	20	1.98
64532705--64532743	20	2.0	20	89	0	60	25	7	23	43	1.80
64532716--64532777	9	6.8	9	80	10	63	24	8	27	40	1.83
64532735--64532776	17	2.4	17	84	4	57	23	9	30	35	1.87
64534691--64534728	13	2.8	14	80	19	53	21	5	7	65	1.38
64534735--64534768	15	2.3	15	94	0	59	17	0	17	64	1.29
64544773--64544896	56	2.2	56	80	2	135	37	9	16	36	1.82
64545083--64545120	17	2.2	17	86	9	51	57	28	5	7	1.49
64546579--64546625	24	2.0	25	84	15	66	55	6	0	38	1.26
64546818--64546855	20	1.9	20	84	10	51	42	28	5	23	1.76
64549151--64549197	17	2.7	17	86	3	58	38	2	4	55	1.31
64550614--64550662	22	2.2	21	82	13	55	42	8	6	42	1.59
64553693--64553740	21	2.2	23	92	7	82	4	2	18	75	1.07
64556084--64556143	31	1.9	31	100	0	120	46	10	10	33	1.71
64558561--64558587	6	4.5	6	100	0	54	48	0	18	33	1.49
64560403--64560625	3	72.7	3	67	11	80	57	2	8	31	1.41
64563974--64564003	15	2.0	15	93	0	51	56	0	13	30	1.37
64564661--64564704	21	2.1	21	87	8	63	75	4	9	11	1.19
64565109--64565142	15	2.4	14	90	5	50	44	8	0	47	1.34
64567455--64567545	44	2.1	44	93	0	155	26	13	9	50	1.72
64567642--64567686	11	4.1	11	79	0	54	15	2	20	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64567649--64567692	22	2.0	22	100	0	88	18	0	22	59	1.38
64568797--64568953	41	3.8	41	82	3	199	20	19	26	33	1.97
64569757--64570060	138	2.2	137	84	6	393	26	8	20	44	1.80
64569825--64570103	69	4.0	69	86	3	355	25	8	20	44	1.81
64570023--64570083	22	2.6	24	74	12	63	27	9	19	42	1.83
64574063--64574106	23	1.9	23	90	9	72	40	22	4	31	1.74
64585915--64585958	16	2.7	15	83	13	52	56	4	4	34	1.40
64587616--64587737	33	3.8	33	89	4	185	36	6	12	44	1.68
64587616--64587737	64	1.9	66	87	3	185	36	6	12	44	1.68
64587649--64588098	205	2.2	205	92	1	744	30	9	15	44	1.78
64588043--64588108	31	2.1	32	88	8	100	37	3	15	43	1.62
64587879--64588248	172	2.2	172	86	3	507	28	11	17	43	1.82
64593711--64594000	153	1.9	154	84	2	361	24	15	24	35	1.94
64601289--64601327	14	2.7	14	88	4	60	43	12	12	30	1.81
64603283--64603418	71	1.9	71	87	3	202	34	9	23	32	1.87
64603687--64604062	109	3.5	109	78	6	383	29	13	17	40	1.87
64605034--64605067	10	3.4	10	95	0	59	35	0	0	64	0.94
64611692--64611721	15	2.0	15	100	0	60	60	0	0	40	0.97
64612861--64612892	6	5.3	6	96	0	55	50	0	46	3	1.17
64620864--64621020	80	1.9	82	89	2	246	40	10	10	38	1.74
64625633--64625672	19	2.0	21	90	9	66	57	5	0	37	1.21
64627460--64627503	17	2.4	18	82	17	56	34	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64633015--64633073	31	1.9	31	89	0	91	44	10	10	35	1.72
64643307--64643336	15	1.9	16	93	6	53	66	10	0	23	1.21
64643801--64643841	18	2.2	19	83	12	50	26	4	4	63	1.35
64646634--64646826	95	2.0	94	89	4	291	22	15	18	43	1.87
64649038--64649089	19	2.7	19	87	0	77	21	7	21	50	1.73
64651110--64651217	56	1.9	55	90	1	171	45	15	6	32	1.72
64651911--64652005	37	2.6	37	85	3	140	26	21	15	36	1.93
64664155--64664197	4	10.8	4	94	0	77	27	0	23	48	1.51
64664156--64664791	212	3.0	217	89	3	966	36	18	16	28	1.93
64665697--64665727	13	2.5	12	94	5	53	83	0	16	0	0.64
64670411--64670454	23	1.9	23	85	0	61	54	2	0	43	1.12
64677358--64677420	30	2.1	30	93	0	108	25	3	15	55	1.55
64678101--64678150	21	2.4	21	82	0	64	76	0	10	14	1.03
64678101--64678143	5	8.4	5	84	5	50	79	0	6	13	0.93
64680132--64680156	10	2.5	10	100	0	50	20	8	8	64	1.46
64684739--64684787	24	2.0	24	100	0	98	32	8	24	34	1.85
64698481--64698517	6	6.2	6	100	0	74	0	0	51	48	1.00
64700262--64700310	22	2.3	21	79	10	55	63	4	2	30	1.24
64704776--64704816	16	2.7	16	81	7	50	43	9	2	43	1.50
64713466--64713492	4	6.8	4	100	0	54	25	0	0	74	0.83
64713618--64713694	31	2.5	31	87	4	111	25	20	11	41	1.86
64724637--64724705	28	2.4	28	85	9	95	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64728093--64728139	21	2.2	21	85	11	60	40	12	8	38	1.74
64728589--64728662	31	2.4	31	88	4	105	50	8	6	35	1.59
64730552--64730623	33	2.2	33	82	0	81	19	4	37	38	1.71
64733002--64733077	15	5.0	16	70	20	56	73	1	21	3	1.06
64733276--64733314	18	2.2	18	86	9	53	17	2	0	79	0.84
64733276--64733314	17	2.2	18	86	4	53	17	2	0	79	0.84
64735159--64735186	13	2.2	13	100	0	56	85	0	14	0	0.59
64735159--64735187	7	4.3	7	91	8	51	86	0	13	0	0.58
64743034--64743067	3	11.3	3	100	0	68	32	35	0	32	1.58
64746954--64747022	30	2.2	32	84	5	88	23	5	7	63	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230