genome.fa.s19.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  203  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60665780--60666360	205	2.9	198	87	8	699	48	11	0	39	1.46
60666383--60666519	25	5.6	25	77	10	120	45	16	2	36	1.59
60671961--60672128	66	2.5	66	87	1	230	41	18	27	11	1.86
60672099--60672211	21	5.4	21	84	0	82	34	15	43	6	1.72
60672099--60672211	42	2.7	42	83	0	136	34	15	43	6	1.72
60672563--60672770	43	4.8	43	80	3	204	22	18	30	28	1.97
60672570--60672770	86	2.3	86	84	0	258	22	18	31	27	1.97
60672761--60672941	43	4.2	42	79	4	182	32	34	16	17	1.92
60672764--60672941	86	2.1	86	90	2	277	32	33	16	17	1.92
60677207--60677343	47	2.9	48	72	11	122	24	10	20	44	1.83
60686878--60687157	139	2.0	139	97	0	533	45	15	11	27	1.80
60699449--60699504	26	2.2	26	83	6	69	48	7	7	37	1.58
60699456--60699505	26	1.9	26	88	8	75	50	6	4	40	1.46
60701796--60701832	6	6.0	6	87	6	56	18	16	13	51	1.76
60703602--60703639	20	1.9	20	100	0	76	47	0	2	50	1.15
60703751--60703787	13	2.7	14	91	4	58	40	10	5	43	1.63
60707664--60707730	34	1.9	35	90	3	109	31	8	13	46	1.74
60707679--60707718	20	2.0	20	90	0	62	27	10	12	50	1.72
60707658--60707734	14	5.0	15	71	20	52	33	9	14	42	1.77
60710471--60710577	40	2.7	40	86	0	151	29	19	24	26	1.98
60710376--60710697	156	2.1	154	88	1	473	31	17	23	27	1.97
60710537--60710807	116	2.3	118	84	1	332	30	15	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60710932--60710999	22	3.1	22	75	8	68	23	0	23	52	1.47
60711012--60711064	14	3.8	14	87	5	72	18	0	30	50	1.47
60711024--60711063	7	5.7	7	81	0	53	17	0	32	50	1.47
60711012--60711063	21	2.5	21	83	0	68	19	0	30	50	1.48
60711222--60711381	7	23.1	7	74	8	78	18	1	32	47	1.57
60711222--60711284	19	3.2	19	82	13	74	14	0	34	50	1.43
60711222--60711381	14	11.6	14	71	16	104	18	1	32	47	1.57
60711321--60711380	29	2.1	29	84	6	77	20	0	33	46	1.51
60711329--60711370	22	1.9	22	90	0	66	19	0	30	50	1.48
60711266--60711377	36	3.1	35	75	6	102	21	1	29	47	1.61
60712512--60712600	43	2.1	43	82	4	108	33	14	22	29	1.94
60712535--60712804	43	6.3	43	82	5	296	25	17	25	31	1.97
60716717--60716767	23	2.2	23	86	10	77	39	7	1	50	1.42
60716777--60716811	12	2.9	12	86	0	52	40	14	0	45	1.45
60717297--60717670	188	2.0	186	82	4	448	28	15	16	39	1.89
60718656--60719095	221	2.0	221	93	0	745	41	21	5	30	1.77
60719544--60719607	20	3.2	20	76	14	60	37	12	32	17	1.87
60723574--60723664	23	4.0	23	92	0	146	16	21	29	31	1.95
60731391--60731433	19	2.2	19	87	8	59	30	2	11	55	1.48
60731391--60731437	18	2.4	20	86	10	62	29	2	10	57	1.44
60736648--60736735	38	2.3	38	78	0	104	18	27	30	23	1.97
60738814--60738853	16	2.7	15	88	7	55	55	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60746844--60746884	18	2.3	19	87	8	59	43	0	2	53	1.13
60747666--60747708	17	2.5	18	82	17	56	13	18	34	32	1.90
60747699--60747747	17	2.9	17	75	0	53	22	18	32	26	1.97
60748513--60748586	31	2.4	31	86	2	96	39	5	10	44	1.62
60755140--60755177	20	1.9	20	100	0	76	26	7	18	47	1.76
60764495--60765321	277	3.0	277	89	2	1191	45	7	20	25	1.77
60765451--60765479	14	2.0	15	93	6	51	68	0	24	6	1.13
60768158--60768182	6	4.2	6	100	0	50	16	0	0	84	0.63
60772741--60773084	171	2.0	173	86	1	485	27	14	20	37	1.92
60773618--60773651	14	2.4	14	90	5	50	44	5	8	41	1.60
60776164--60776194	13	2.4	13	94	0	53	74	0	9	16	1.07
60778931--60778975	12	3.6	13	82	8	58	24	0	8	66	1.20
60781668--60781724	30	1.9	30	92	0	96	61	10	7	21	1.52
60786327--60786439	25	4.6	25	80	4	113	31	20	27	20	1.97
60786743--60786776	15	2.2	16	89	5	52	47	14	0	38	1.45
60786761--60786820	30	2.0	30	96	0	111	38	23	5	33	1.76
60790151--60790218	27	2.5	27	83	4	75	23	17	20	38	1.93
60790183--60790412	27	8.5	27	85	3	268	20	20	16	43	1.89
60790202--60790412	54	3.9	54	89	2	309	20	19	16	43	1.88
60791169--60791211	18	2.3	19	84	4	52	65	18	9	6	1.44
60796448--60796548	50	2.0	50	86	3	141	37	16	26	18	1.93
60796448--60796548	25	4.0	25	79	2	105	37	16	26	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60797172--60797252	24	3.4	24	89	0	117	41	27	7	23	1.81
60804678--60804707	9	3.3	9	95	0	51	53	10	0	36	1.35
60809955--60810010	26	2.1	26	86	6	76	35	10	10	42	1.74
60816474--60816508	12	3.2	11	88	11	54	8	25	2	62	1.38
60822069--60822111	21	2.1	21	86	4	61	23	32	20	23	1.98
60824523--60824590	34	2.0	35	88	2	102	22	25	22	30	1.99
60830693--60830941	50	4.8	50	88	3	327	21	30	22	25	1.99
60837373--60837616	50	4.7	50	88	3	326	22	29	22	25	1.99
60837959--60838016	30	1.9	30	86	6	82	29	24	5	41	1.76
60840733--60840771	19	2.1	19	85	4	53	33	38	2	25	1.70
60848446--60848568	25	4.9	25	96	0	228	21	26	19	32	1.97
60848568--60848623	22	2.5	22	85	5	78	16	23	16	44	1.86
60849880--60849999	49	2.5	48	85	5	154	26	14	27	31	1.95
60856786--60856822	9	4.1	9	85	0	56	72	0	2	24	0.97
60856782--60856821	18	2.2	19	90	4	64	72	0	2	25	0.97
60865295--60865440	60	2.5	56	75	16	143	21	23	15	39	1.91
60865330--60865540	30	7.1	30	73	13	127	23	23	14	38	1.91
60865412--60865483	29	2.4	30	86	2	101	19	26	11	43	1.84
60865471--60865540	29	2.4	29	85	0	95	24	24	12	38	1.90
60869777--60869877	42	2.4	42	75	9	98	25	23	18	31	1.98
60871329--60871395	27	2.5	27	85	0	80	26	17	16	38	1.91
60871351--60871453	27	3.8	27	88	0	143	22	15	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60881243--60881285	21	2.1	20	82	4	50	20	20	32	25	1.97
60886846--60886880	12	3.2	11	88	11	54	62	2	25	8	1.38
60894943--60894972	9	3.3	9	95	0	51	40	0	0	60	0.97
60898552--60898662	42	2.7	43	80	10	115	30	25	18	25	1.98
60900063--60900262	27	7.4	27	85	4	188	29	29	15	26	1.96
60900063--60900262	54	3.7	54	81	6	217	29	29	15	26	1.96
60908125--60908324	27	7.4	27	85	4	188	29	29	15	26	1.96
60908125--60908324	54	3.7	54	81	6	217	29	29	15	26	1.96
60911839--60911906	30	2.2	30	84	2	82	48	7	19	25	1.74
60920231--60920277	24	2.0	24	87	8	69	38	4	27	29	1.76
60922169--60922245	33	2.3	33	84	4	102	38	20	12	27	1.89
60927333--60927408	23	3.3	23	96	0	143	21	21	26	31	1.98
60927538--60927610	38	1.9	37	86	8	103	45	1	21	31	1.61
60933434--60933561	27	4.7	27	82	6	161	42	19	16	21	1.89
60933434--60933574	54	2.6	54	89	2	203	43	18	15	21	1.87
60933732--60933786	26	2.1	26	89	0	83	21	20	23	34	1.97
60940839--60940903	28	2.4	28	87	7	89	41	13	18	26	1.88
60941227--60941297	33	2.1	34	81	2	81	23	22	25	28	2.00
60948059--60948118	6	10.3	6	79	13	72	18	1	0	80	0.80
60948059--60948113	13	4.1	13	82	15	67	18	1	0	80	0.81
60948064--60948118	22	2.4	24	87	6	78	18	1	0	80	0.81
60948059--60948121	29	2.2	29	88	8	94	19	1	0	79	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60950811--60950849	21	2.0	20	85	10	53	28	15	2	53	1.55
60956144--60956174	4	8.0	4	92	7	55	51	0	0	48	1.00
60961359--60961407	18	2.8	18	79	14	66	34	8	0	57	1.29
60961540--60961596	30	1.9	29	89	3	87	31	14	3	50	1.59
60965788--60965874	11	7.8	11	75	14	72	82	9	4	3	0.91
60966307--60966339	17	1.9	17	88	11	50	84	0	12	3	0.72
60966688--60966884	108	1.8	108	86	4	290	25	16	9	48	1.75
60967779--60968511	46	15.9	46	88	3	1030	25	15	26	33	1.95
60968732--60969418	128	5.4	128	90	0	1043	31	22	20	25	1.98
60968740--60969418	44	15.9	44	65	14	186	31	21	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230