genome.fa.s19.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  167  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49698958--49699168	91	2.3	91	83	4	264	34	10	18	36	1.85
49698964--49699192	92	2.5	91	81	4	257	37	11	18	32	1.86
49701337--49701389	27	2.0	27	96	0	97	43	1	24	30	1.65
49704696--49704727	14	2.1	16	88	11	50	21	9	6	62	1.47
49706131--49706257	43	3.0	43	87	2	175	18	18	29	33	1.95
49707207--49707277	30	2.4	30	90	0	106	29	18	4	47	1.67
49707273--49707342	30	2.4	29	85	7	88	30	21	10	38	1.86
49707273--49707350	29	2.7	29	86	6	95	28	24	10	37	1.88
49707490--49707534	23	1.9	24	90	4	74	64	2	17	15	1.39
49708047--49708094	25	1.9	25	82	0	60	75	2	18	4	1.07
49708770--49708826	17	3.3	17	78	4	60	38	14	8	38	1.77
49708880--49709297	17	23.8	17	67	17	101	30	12	11	46	1.76
49708880--49708930	20	2.7	19	82	11	70	35	13	11	39	1.82
49709010--49709298	17	16.3	19	70	13	138	32	12	10	44	1.76
49708878--49709298	18	23.9	18	69	15	190	30	12	10	46	1.76
49709276--49709320	21	2.2	20	96	4	81	48	8	8	33	1.65
49713055--49713079	9	2.8	9	100	0	50	60	0	32	8	1.26
49721861--49721919	25	2.4	25	85	5	75	84	5	8	1	0.82
49721861--49721919	17	3.2	17	76	11	55	84	5	8	1	0.82
49721861--49721919	9	6.4	9	75	16	50	84	5	8	1	0.82
49722797--49723108	80	4.0	79	81	6	348	30	15	19	34	1.92
49722797--49723108	78	4.0	79	82	7	368	30	15	19	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49723022--49723200	96	1.9	94	83	4	234	35	13	18	31	1.90
49723119--49723306	75	2.5	75	93	3	317	30	15	22	31	1.95
49723121--49723361	75	3.2	74	87	5	315	28	17	20	34	1.95
49723696--49723871	30	5.9	29	73	15	130	30	22	7	39	1.81
49724003--49724047	23	1.9	24	90	4	74	64	2	17	15	1.39
49724573--49724635	24	2.6	24	77	5	65	71	4	19	4	1.22
49725297--49725342	17	2.6	18	80	16	60	32	15	8	43	1.77
49725384--49725696	18	17.3	18	71	17	163	31	12	11	43	1.79
49725384--49725488	35	2.9	36	79	10	117	29	12	12	45	1.78
49725378--49725441	20	3.3	20	76	14	71	42	12	10	34	1.78
49725384--49725723	37	9.4	36	71	12	148	30	13	11	44	1.79
49725391--49725861	17	26.8	18	69	16	215	29	12	11	46	1.76
49725703--49725761	28	2.1	28	100	0	118	20	10	6	62	1.49
49725771--49725881	17	6.4	17	77	10	98	36	10	10	42	1.75
49731098--49731130	16	2.0	17	94	5	59	21	0	0	78	0.75
49732715--49732803	40	2.2	40	82	9	101	35	21	22	20	1.96
49732842--49733188	113	3.1	113	90	0	541	27	24	21	26	1.99
49733281--49733390	41	2.7	41	81	5	107	16	27	31	24	1.96
49735870--49735900	16	1.9	16	93	0	53	35	25	6	32	1.82
49737041--49737096	27	2.1	27	93	0	94	42	3	1	51	1.29
49737052--49737111	27	2.2	27	88	5	86	45	5	0	50	1.23
49737484--49737523	14	2.9	14	88	0	53	52	5	2	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49743466--49743624	87	1.8	87	85	8	225	41	17	28	11	1.85
49743613--49743671	21	2.8	21	84	0	82	30	16	45	6	1.74
49743879--49743908	14	2.1	14	100	0	60	13	0	33	53	1.40
49743980--49744402	173	2.5	172	94	0	738	22	20	26	30	1.98
49743976--49744402	43	9.9	43	92	0	710	22	20	26	30	1.98
49744518--49744561	21	2.1	21	87	8	63	43	29	13	13	1.83
49744712--49744744	16	2.0	17	94	5	59	42	6	0	51	1.26
49746339--49746391	28	2.0	27	85	14	74	41	16	0	41	1.49
49746629--49746709	41	1.9	43	87	5	121	33	22	6	38	1.79
49764220--49764266	9	5.2	9	100	0	94	57	10	0	31	1.33
49764220--49764274	27	2.0	27	92	0	92	58	12	0	29	1.35
49766208--49766245	20	1.9	20	88	0	58	60	0	2	36	1.11
49769525--49769552	14	2.0	14	100	0	56	7	14	28	50	1.69
49770386--49770513	65	1.9	67	92	6	217	43	4	3	47	1.42
49770767--49770827	20	3.3	20	69	21	60	8	29	0	62	1.24
49771975--49772006	15	2.1	15	100	0	64	37	12	6	43	1.68
49777674--49777799	63	2.0	63	95	0	225	22	24	23	30	1.99
49778583--49778622	16	2.5	16	95	0	71	27	27	7	37	1.84
49779854--49779904	23	2.2	23	82	0	57	39	11	17	31	1.86
49779863--49779989	46	2.7	46	77	13	118	36	9	18	36	1.83
49779913--49779992	23	3.5	22	73	17	74	35	7	16	41	1.76
49779962--49780022	32	1.9	32	83	6	79	27	11	18	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779994--49780110	47	2.5	47	79	4	121	41	13	14	29	1.84
49780149--49780689	54	10.1	54	82	1	476	37	12	23	26	1.91
49782652--49782683	15	2.1	15	94	0	55	37	25	6	31	1.81
49783065--49783453	46	8.6	46	96	1	655	27	22	16	33	1.95
49787068--49787109	21	1.9	23	85	9	61	21	23	4	50	1.68
49789403--49789887	41	11.9	41	81	3	458	20	20	29	29	1.97
49789403--49789884	204	2.4	205	80	6	489	20	20	29	29	1.97
49791270--49791377	24	4.7	23	67	23	57	51	8	1	37	1.43
49791361--49791391	14	2.1	15	94	5	55	54	6	0	38	1.26
49791377--49791410	18	1.9	17	88	5	50	55	2	0	41	1.15
49795464--49795620	43	3.7	43	84	1	190	28	17	26	28	1.97
49802289--49802408	60	2.0	61	91	1	197	32	15	11	40	1.83
49802386--49802437	25	2.1	25	92	0	86	30	11	23	34	1.90
49804208--49804254	22	2.2	22	84	3	60	63	6	14	14	1.49
49808814--49809121	40	7.7	40	97	0	571	21	26	20	31	1.98
49812504--49812603	31	3.2	30	74	8	92	14	10	8	68	1.40
49812554--49812595	11	3.8	11	80	0	57	19	16	7	57	1.62
49812522--49812603	22	3.8	22	71	16	64	14	12	8	64	1.49
49812707--49812737	11	2.9	11	95	4	55	25	0	6	67	1.14
49832113--49832179	32	2.2	32	79	10	79	20	7	26	44	1.78
49841943--49842234	145	2.0	145	97	0	557	22	26	13	38	1.90
49848764--49848833	28	2.5	28	86	6	99	25	8	30	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49855665--49855718	20	2.7	21	74	8	58	33	9	18	38	1.83
49865304--49865352	20	2.5	20	86	6	64	10	36	18	34	1.85
49865418--49865473	20	2.7	21	81	10	62	67	0	32	0	0.91
49865736--49865776	21	2.0	21	100	0	82	41	9	4	43	1.59
49866375--49866516	50	2.8	50	81	8	153	33	15	11	38	1.84
49866772--49866809	16	2.4	16	95	0	67	39	0	2	57	1.12
49869273--49869310	20	1.9	20	88	0	58	52	10	2	34	1.50
49869726--49869840	57	2.1	54	91	4	185	48	9	17	24	1.76
49869954--49869984	15	2.0	16	93	6	55	80	0	0	19	0.71
49869954--49870027	9	8.4	8	75	16	51	75	1	5	17	1.06
49870359--49870388	7	4.3	7	100	0	60	30	13	43	13	1.82
49871184--49871234	11	4.6	11	88	7	59	19	33	0	47	1.50
49871184--49871240	22	2.7	20	82	15	62	19	33	0	47	1.50
49871185--49871240	20	2.5	23	80	11	64	19	33	0	46	1.50
49873218--49873452	51	4.7	50	76	6	188	25	17	27	29	1.97
49873218--49873493	101	2.7	102	80	6	301	27	15	26	30	1.96
49875374--49875399	7	3.7	7	100	0	52	26	0	15	57	1.38
49876054--49876091	18	2.1	18	90	0	58	21	26	10	42	1.85
49876338--49876398	21	2.9	21	85	4	61	29	37	21	11	1.88
49879719--49880009	126	2.3	126	91	2	469	27	20	19	32	1.97
49881130--49881199	22	3.2	22	81	0	68	17	10	5	67	1.39
49888827--49888957	66	2.0	66	86	0	181	25	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49889550--49889600	26	2.0	26	92	0	84	29	25	1	43	1.66
49890659--49890722	32	2.0	32	100	0	128	37	6	28	28	1.81
49901873--49901941	30	2.3	29	83	11	95	36	13	24	26	1.92
49908527--49908600	31	2.4	31	88	6	107	41	12	24	21	1.87
49908581--49908765	30	6.2	30	73	9	103	38	13	26	21	1.91
49908589--49908659	29	2.4	30	88	2	108	42	11	28	18	1.84
49908708--49908763	29	1.9	29	88	0	85	35	16	32	16	1.90
49908527--49908760	119	2.0	120	86	2	328	38	13	26	21	1.91
49912420--49912594	9	19.9	9	77	6	180	33	1	18	45	1.60
49912458--49912537	34	2.4	34	82	0	97	33	2	21	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230