genome.fa.s19.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  141  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41436371--41436670	32	9.3	32	69	19	128	46	16	1	35	1.55
41436617--41436662	14	3.6	14	72	27	57	43	17	0	39	1.49
41436600--41436670	23	3.0	23	95	2	124	42	16	0	40	1.49
41439401--41439471	21	3.4	21	86	0	97	32	18	45	4	1.69
41439798--41439899	42	2.5	42	87	7	154	36	18	19	25	1.95
41440020--41440064	22	2.1	21	91	4	72	44	26	15	13	1.83
41440520--41440809	50	5.8	50	82	1	287	23	27	21	28	1.99
41440911--41440937	13	2.1	13	100	0	54	62	7	0	29	1.22
41446189--41446233	21	2.2	20	84	11	56	48	15	0	35	1.45
41446329--41446480	27	5.6	27	74	9	98	26	22	13	37	1.92
41450881--41450947	34	2.0	34	84	0	89	43	20	4	31	1.72
41452508--41452539	13	2.5	13	94	0	55	28	37	6	28	1.81
41456513--41456565	16	3.3	16	81	0	61	16	22	1	58	1.48
41458232--41458265	14	2.5	13	90	9	50	29	2	0	67	1.05
41460542--41460747	45	4.6	45	86	0	277	43	12	21	22	1.86
41460898--41460976	27	3.0	26	69	10	61	41	10	22	25	1.85
41467032--41467114	35	2.4	35	97	0	157	56	0	3	39	1.17
41467028--41467120	35	2.4	38	82	15	129	59	0	3	37	1.14
41473393--41473538	20	7.3	19	65	9	58	15	28	18	38	1.91
41473375--41473691	40	7.9	40	85	0	366	17	27	18	37	1.92
41473375--41473691	80	4.0	80	86	2	404	17	27	18	37	1.92
41473375--41473687	120	2.6	120	84	1	414	16	27	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41473665--41473714	26	1.9	26	83	0	64	14	24	22	40	1.90
41481829--41481995	40	4.2	40	83	3	210	29	28	20	22	1.98
41485627--41485687	30	2.0	31	83	3	79	29	16	24	29	1.96
41487366--41487464	33	3.1	33	79	10	114	26	21	25	27	1.99
41487401--41487461	30	2.0	31	93	3	106	24	19	27	27	1.99
41487810--41488020	27	7.8	27	79	10	182	17	18	19	44	1.87
41487810--41488020	54	3.9	53	82	6	246	17	18	19	44	1.87
41487821--41488020	81	2.5	81	82	3	242	17	19	19	44	1.87
41491360--41491384	13	1.9	13	100	0	50	32	20	16	32	1.94
41492964--41493261	47	6.4	47	88	1	431	31	10	32	26	1.89
41492964--41493273	141	2.2	140	89	5	478	32	9	31	26	1.88
41494356--41494395	20	2.0	20	100	0	80	45	5	10	40	1.60
41495294--41495467	43	4.0	43	96	0	303	22	16	34	25	1.95
41495449--41495522	29	2.6	29	89	4	105	25	16	32	25	1.96
41495545--41495899	40	8.9	40	93	0	575	27	18	27	26	1.98
41495915--41495995	40	2.0	40	82	0	99	22	22	28	27	1.99
41497718--41497742	13	1.9	13	100	0	50	32	20	16	32	1.94
41499336--41499619	47	6.1	47	92	1	437	30	10	32	26	1.89
41504610--41504665	28	2.0	28	82	10	69	37	10	5	46	1.62
41504726--41504755	15	1.9	16	93	6	53	43	0	0	56	0.99
41508418--41508643	29	7.8	29	75	8	138	37	13	26	22	1.92
41511238--41512350	554	2.0	554	98	0	2136	27	12	19	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41512844--41512902	29	2.0	29	100	0	118	37	6	20	35	1.79
41514882--41515039	29	5.4	29	80	3	165	37	10	26	25	1.88
41514882--41515048	87	1.9	87	88	0	253	36	10	27	25	1.89
41514904--41515072	29	5.8	28	79	6	133	36	10	27	25	1.89
41515024--41515082	30	2.0	29	83	3	73	37	13	25	23	1.92
41517489--41517830	171	2.0	169	94	1	594	37	8	9	44	1.68
41537302--41537387	25	3.4	25	88	3	111	27	22	17	32	1.96
41537288--41537391	50	2.1	50	83	3	129	27	19	21	31	1.97
41539000--41539064	35	1.9	33	90	6	103	52	0	7	40	1.30
41541381--41542812	720	2.0	715	94	1	2490	26	9	23	40	1.85
41542908--41542932	13	1.9	13	100	0	50	8	28	24	40	1.83
41549593--41549776	51	3.5	51	87	4	226	25	21	30	22	1.98
41549593--41549833	50	4.7	51	83	5	236	26	21	28	23	1.99
41549593--41549882	50	5.7	50	78	7	228	28	21	27	23	1.99
41549593--41549833	101	2.3	103	80	7	258	26	21	28	23	1.99
41555936--41556226	50	5.7	49	82	5	285	27	20	28	23	1.99
41555933--41556276	150	2.3	151	79	7	354	28	20	27	24	1.99
41560434--41560483	26	1.9	26	87	0	73	12	26	32	30	1.92
41560357--41560719	101	3.6	100	89	1	548	19	20	28	31	1.97
41560533--41560582	26	1.9	26	95	0	91	18	22	32	28	1.97
41572585--41572618	4	8.5	4	86	0	50	73	0	0	26	0.83
41573570--41573622	3	17.7	3	96	0	97	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41573769--41573829	20	2.8	21	78	16	63	14	6	8	70	1.32
41576492--41576676	79	2.3	81	82	7	218	25	27	22	24	2.00
41576492--41576676	40	4.7	40	80	7	216	25	27	22	24	2.00
41579372--41579549	27	6.6	27	80	3	160	30	28	14	26	1.95
41579372--41579549	54	3.3	55	80	3	182	30	28	14	26	1.95
41587346--41587523	27	6.6	27	83	5	180	29	28	15	26	1.96
41587367--41587522	82	1.9	81	86	3	224	28	28	16	26	1.97
41595322--41595498	27	6.6	27	83	4	196	29	28	15	27	1.96
41595322--41595498	55	3.3	54	82	4	205	29	28	15	27	1.96
41595343--41595497	82	1.9	80	86	5	222	29	28	15	27	1.96
41603978--41604043	13	5.1	13	78	7	71	39	25	3	31	1.71
41615309--41615341	15	2.2	15	89	10	50	69	6	12	12	1.35
41615719--41615751	13	2.5	14	85	14	52	30	0	9	60	1.27
41618190--41618647	113	4.0	111	77	8	372	25	19	25	29	1.99
41618217--41618647	114	3.8	113	77	7	329	25	19	25	29	1.99
41619238--41619318	39	2.0	40	85	2	110	19	3	38	38	1.70
41620028--41620116	39	2.3	40	86	3	128	20	2	39	38	1.65
41619189--41620770	789	2.0	789	96	0	2914	36	10	15	37	1.81
41622079--41622151	33	2.3	31	84	11	87	19	19	23	38	1.93
41623155--41623489	9	38.3	9	73	13	281	45	22	1	31	1.60
41623156--41623489	43	7.7	43	73	14	240	45	22	1	31	1.60
41623156--41623489	25	12.8	26	78	12	196	45	22	1	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41623408--41623480	19	4.6	17	66	30	63	43	21	4	30	1.71
41628982--41629024	21	2.1	20	86	4	59	34	18	39	6	1.78
41629570--41629621	17	2.7	19	74	17	54	40	21	13	25	1.89
41633198--41633258	30	2.0	30	96	0	113	44	21	0	34	1.53
41638070--41638111	15	2.8	15	88	0	57	38	14	23	23	1.92
41641729--41641776	19	2.6	18	83	6	60	66	4	14	14	1.39
41641728--41641777	18	2.5	20	78	15	59	68	4	14	14	1.36
41642638--41642736	6	16.0	6	67	10	56	70	2	19	8	1.22
41642638--41642693	18	3.1	18	89	0	85	71	3	17	7	1.23
41642691--41642725	14	2.3	16	90	9	56	71	0	20	8	1.11
41642701--41642768	14	4.7	14	70	29	54	69	1	16	13	1.27
41646258--41646409	27	5.6	27	93	3	241	26	13	28	30	1.94
41646258--41646409	55	2.8	55	94	0	259	26	13	28	30	1.94
41664648--41664910	120	2.2	119	81	4	298	26	28	20	24	1.99
41664648--41664857	40	5.3	40	91	0	296	26	28	20	24	1.99
41664690--41664910	80	2.8	80	86	4	250	25	28	21	24	1.99
41664842--41664919	40	1.9	41	82	10	97	26	28	21	23	1.99
41668419--41668463	21	2.1	21	84	15	58	60	11	8	20	1.57
41670933--41670965	17	1.9	17	93	0	57	27	24	6	42	1.78
41671625--41671821	98	2.0	98	92	0	331	38	24	9	27	1.86
41672487--41672536	26	2.0	26	92	4	84	58	4	8	30	1.45
41673140--41673197	22	2.6	22	84	7	73	43	17	3	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41673176--41673307	19	6.8	19	92	3	219	35	15	11	37	1.84
41698569--41698601	14	2.4	14	94	0	57	24	6	24	45	1.75
41706808--41707777	483	2.0	483	96	0	1769	31	22	15	30	1.95
41714869--41714994	64	2.0	64	95	0	225	38	16	14	30	1.88
41719457--41719894	47	9.3	47	93	0	714	32	9	29	28	1.88
41720017--41720091	37	2.0	37	87	5	107	21	21	30	26	1.98
41721948--41722089	43	3.3	43	97	0	275	23	14	33	27	1.94
41722075--41722148	29	2.6	29	87	8	98	27	16	31	25	1.96
41722461--41722656	40	4.9	40	81	5	184	26	22	27	24	2.00
41722461--41722657	80	2.5	81	80	7	206	25	22	26	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230