genome.fa.s19.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  157  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46526218--46526402	79	2.3	81	84	7	236	25	27	22	24	2.00
46526218--46526402	40	4.7	40	83	7	234	25	27	22	24	2.00
46534057--46534241	79	2.3	81	83	7	227	25	28	22	23	2.00
46534057--46534241	40	4.7	40	82	7	225	25	28	22	23	2.00
46537061--46537103	18	2.4	18	88	0	59	13	23	18	44	1.86
46537697--46537735	12	3.2	12	85	0	51	20	23	5	51	1.67
46537934--46538176	50	4.7	51	76	8	183	23	25	20	29	1.99
46541938--46541974	18	2.0	19	85	15	51	43	5	18	32	1.73
46543698--46543730	16	2.0	17	88	5	50	27	3	18	51	1.60
46553943--46553980	20	1.9	20	84	10	51	52	28	0	18	1.45
46555127--46555168	3	14.0	3	94	0	75	66	30	0	2	1.04
46559234--46559355	44	2.8	44	73	12	124	31	25	16	27	1.96
46562645--46562919	139	2.0	139	95	0	496	32	27	13	26	1.94
46567271--46567392	44	2.8	44	73	12	124	31	25	16	27	1.96
46568031--46568060	8	3.6	8	95	4	51	60	16	0	23	1.36
46568925--46569649	359	2.0	359	92	0	1209	32	24	19	23	1.97
46570790--46570874	25	3.4	24	72	15	66	23	20	24	31	1.98
46571300--46571331	16	1.9	17	93	6	57	37	9	9	43	1.69
46575195--46575417	40	5.6	40	86	3	245	26	27	21	24	1.99
46575195--46575417	120	1.9	119	81	6	272	26	27	21	24	1.99
46575349--46575426	40	1.9	41	82	10	97	26	28	21	23	1.99
46584042--46584077	17	2.1	17	100	0	72	5	36	38	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46590645--46590717	22	3.4	22	74	11	71	38	12	24	24	1.90
46590629--46590736	20	5.2	20	70	8	81	33	15	25	25	1.95
46590629--46590736	42	2.6	42	88	2	155	33	15	25	25	1.95
46593910--46594030	29	4.1	29	82	1	125	36	13	25	24	1.92
46602347--46602398	20	2.6	19	85	8	68	44	17	11	26	1.83
46604220--46604259	20	2.0	21	95	5	73	47	15	10	27	1.77
46609290--46609336	15	3.1	15	81	0	58	51	0	12	36	1.40
46611065--46611098	17	1.9	18	94	5	61	32	5	2	58	1.37
46611109--46611185	29	2.8	28	78	17	97	57	0	11	31	1.35
46614666--46614718	27	2.0	27	88	0	79	33	18	26	20	1.96
46615412--46615464	27	2.0	27	88	7	81	30	15	30	24	1.95
46615412--46615483	27	2.7	27	76	8	67	27	18	27	26	1.98
46619359--46619429	27	2.6	27	77	0	79	28	38	16	16	1.91
46620400--46620442	17	2.6	16	82	10	50	65	2	2	30	1.18
46626201--46626247	23	2.0	23	100	0	94	27	17	4	51	1.64
46626207--46626257	23	2.3	22	86	10	68	29	17	3	49	1.65
46638321--46638387	28	2.4	28	90	5	100	14	14	37	32	1.88
46638359--46638564	103	2.0	103	97	0	385	26	15	31	27	1.95
46640045--46640084	19	2.1	19	90	9	64	35	7	2	55	1.42
46640134--46640288	78	2.0	78	93	3	269	30	3	8	57	1.44
46647532--46647748	38	5.7	38	83	2	247	14	21	29	34	1.93
46647532--46647743	114	1.9	114	83	0	280	14	21	29	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46652054--46652106	23	2.4	22	76	20	56	9	18	1	69	1.25
46656973--46657005	16	2.0	17	88	5	50	12	12	27	48	1.76
46659242--46659295	27	2.0	27	100	0	108	48	22	7	22	1.75
46660181--46660268	43	2.0	43	100	0	176	10	27	2	60	1.41
46661456--46661502	24	2.0	24	86	0	67	55	10	12	21	1.67
46663073--46663148	36	2.1	36	95	0	134	13	27	1	57	1.44
46663150--46663188	11	3.5	11	80	19	53	61	2	0	35	1.10
46665557--46665595	19	2.1	19	85	9	53	23	0	12	64	1.28
46665254--46666161	451	2.0	447	97	0	1548	40	6	17	35	1.76
46670545--46670586	11	3.8	11	87	0	57	9	9	9	71	1.32
46672815--46673027	111	1.9	114	83	10	278	23	4	15	57	1.57
46675808--46675900	21	4.4	21	75	4	71	34	24	22	18	1.96
46677291--46677330	20	1.9	20	85	10	53	52	0	2	45	1.14
46677283--46677339	30	2.0	28	86	6	78	52	0	1	45	1.11
46684643--46684718	32	2.4	32	84	0	89	25	36	22	15	1.93
46684836--46684916	3	27.0	3	94	0	144	66	0	32	1	0.99
46687001--46687035	14	2.5	14	95	0	61	34	20	5	40	1.76
46687705--46687756	6	8.7	6	97	0	95	17	34	34	13	1.89
46688234--46688415	48	3.8	48	97	0	337	48	12	7	31	1.69
46691853--46691893	20	2.0	21	85	4	57	39	0	4	56	1.21
46691884--46691971	25	3.4	26	80	13	85	27	6	6	59	1.49
46691910--46691971	27	2.3	26	84	13	74	27	4	6	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46699070--46699394	88	3.7	87	87	3	463	28	23	24	24	2.00
46699409--46699676	131	2.1	128	89	3	403	29	21	25	22	1.99
46699409--46699709	131	2.3	130	84	8	364	30	21	25	22	1.99
46700034--46700127	44	2.1	44	96	0	170	29	25	19	25	1.98
46700034--46700138	44	2.4	44	91	3	158	29	23	21	24	1.99
46701552--46701592	20	2.0	21	85	4	57	39	0	4	56	1.21
46701583--46701670	25	3.4	26	80	13	85	27	6	6	59	1.49
46701609--46701670	27	2.3	26	84	13	74	27	4	6	61	1.41
46706080--46706167	31	2.8	31	79	3	97	38	18	19	23	1.93
46707715--46707774	30	2.0	31	86	3	86	40	0	40	20	1.52
46710667--46710788	22	5.3	22	62	21	61	24	29	11	34	1.91
46710639--46710942	47	6.4	47	89	3	398	27	30	9	32	1.88
46724103--46724141	20	1.9	20	84	5	51	48	10	2	38	1.51
46724061--46724270	72	2.9	73	64	24	156	44	12	5	37	1.66
46724046--46724329	144	2.0	145	89	4	441	44	12	5	38	1.66
46726913--46726969	22	2.6	22	76	15	55	52	5	3	38	1.41
46728416--46728449	12	2.9	12	86	4	52	32	0	0	67	0.91
46731593--46731623	13	2.4	13	100	0	62	16	12	9	61	1.56
46732987--46733457	42	11.3	42	87	0	658	37	23	18	20	1.94
46732982--46733457	167	2.8	168	87	2	688	37	23	17	21	1.94
46732987--46733457	125	3.8	126	87	1	642	37	23	18	20	1.94
46738428--46738454	4	6.8	4	100	0	54	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46740754--46740794	18	2.3	18	91	0	64	29	19	17	34	1.94
46742177--46742241	27	2.4	26	82	12	78	40	9	10	40	1.72
46742187--46742241	27	2.0	27	92	0	92	41	10	9	38	1.72
46743131--46743430	146	2.1	146	89	3	464	43	10	6	40	1.64
46750902--46751156	46	5.3	46	85	10	223	34	14	22	28	1.93
46750850--46751156	52	6.1	51	85	10	418	34	14	22	28	1.93
46750836--46751156	98	3.3	98	97	0	588	34	14	22	28	1.94
46751119--46751265	37	4.0	37	92	1	235	36	15	22	25	1.93
46752519--46752686	58	3.0	58	87	10	237	22	13	30	33	1.92
46752538--46752628	28	3.2	28	66	22	80	25	15	31	27	1.95
46752579--46752721	49	2.9	49	93	0	232	23	13	30	32	1.94
46755758--46756012	46	5.3	46	85	10	223	34	14	22	28	1.93
46755706--46756012	52	6.1	51	85	10	418	34	14	22	28	1.93
46755692--46756012	98	3.3	98	97	0	588	34	14	22	28	1.94
46755975--46756121	37	4.0	37	92	1	235	36	15	22	25	1.93
46760561--46760603	23	2.0	21	86	9	59	0	32	0	67	0.91
46774939--46774987	18	2.6	19	80	6	55	30	2	0	67	1.02
46789783--46789829	23	2.0	24	88	8	71	53	4	0	42	1.20
46799232--46799281	26	1.9	26	91	0	82	32	12	10	46	1.74
46801098--46801171	23	3.2	23	92	0	130	45	21	14	17	1.84
46801064--46801176	46	2.5	44	85	9	131	43	23	15	17	1.87
46801497--46801546	25	2.0	25	84	11	66	36	22	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46803834--46803877	20	2.2	20	95	0	79	34	11	11	43	1.77
46806958--46806996	20	1.9	20	84	5	51	23	2	5	69	1.21
46814389--46814456	16	4.2	16	82	0	82	27	2	35	33	1.72
46814440--46814546	45	2.5	43	79	13	125	35	5	28	30	1.80
46814672--46814713	15	2.7	16	82	14	52	52	2	0	45	1.13
46814681--46814722	15	2.9	15	82	10	52	52	0	0	47	1.00
46815573--46815599	13	2.1	13	100	0	54	22	0	29	48	1.51
46825323--46825359	19	1.9	19	88	0	56	29	2	8	59	1.40
46827622--46827705	6	14.7	6	76	9	77	38	16	29	15	1.90
46827619--46827703	15	5.7	15	80	2	64	37	16	30	15	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230