genome.fa.s19.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  206  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61512139--61512276	40	3.5	40	76	1	134	39	18	20	22	1.93
61516592--61516637	24	1.9	24	86	8	67	32	4	2	60	1.28
61518850--61518900	16	2.9	18	70	24	54	23	7	1	66	1.28
61523263--61523307	22	2.0	22	100	0	90	26	8	17	46	1.78
61530009--61530033	12	2.1	12	100	0	50	76	0	0	24	0.80
61530273--61530307	3	11.7	3	100	0	70	0	34	0	65	0.93
61540701--61540729	5	5.8	5	100	0	58	20	0	0	79	0.74
61541900--61541961	30	2.0	31	87	9	92	43	1	4	50	1.33
61548568--61548599	15	2.1	16	94	5	57	43	3	0	53	1.16
61549415--61549462	22	2.2	21	85	10	62	43	0	2	54	1.12
61554824--61554964	61	2.3	60	84	7	178	26	22	9	40	1.85
61558178--61558251	29	2.5	29	78	12	78	27	13	10	48	1.75
61559354--61559419	33	2.0	33	96	0	123	39	7	24	28	1.82
61559623--61560355	365	2.0	365	96	0	1351	34	11	19	35	1.88
61560310--61560364	21	2.5	23	77	17	62	34	5	16	43	1.71
61561148--61561420	143	1.9	143	96	1	503	38	20	15	25	1.91
61562695--61562740	16	2.9	16	86	0	65	28	0	28	43	1.55
61568077--61568212	63	2.2	63	86	2	184	32	8	32	27	1.86
61569867--61569945	22	3.7	20	79	17	79	60	3	0	35	1.15
61570050--61570094	15	3.2	14	84	9	56	77	4	0	17	0.92
61570717--61570805	43	2.0	44	91	2	144	50	3	10	35	1.53
61571669--61571719	22	2.3	22	96	0	93	23	9	33	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61576175--61576226	25	2.1	25	96	0	95	46	1	34	17	1.59
61576942--61576972	15	2.0	16	93	6	55	32	9	19	38	1.84
61578424--61578483	30	2.0	31	83	9	79	35	5	8	51	1.54
61588447--61588480	13	2.6	13	85	0	50	52	2	0	44	1.16
61588891--61588924	2	16.5	2	87	6	50	50	0	2	47	1.16
61594788--61594813	3	8.7	3	100	0	52	30	0	0	69	0.89
61594964--61595043	39	2.0	40	85	9	110	17	8	1	72	1.16
61595411--61595444	4	8.5	4	86	0	50	26	5	0	67	1.13
61595719--61596008	109	2.7	108	90	3	433	30	17	17	34	1.93
61596959--61597024	26	2.5	27	85	2	89	50	4	6	39	1.48
61596993--61597063	35	2.0	37	83	5	92	43	4	12	39	1.62
61597385--61597493	30	3.7	29	87	2	146	33	22	2	42	1.68
61597387--61597523	30	4.6	30	85	3	127	31	22	4	41	1.73
61597855--61597906	7	7.3	7	89	4	59	84	0	11	3	0.74
61597849--61597890	13	3.2	13	86	6	57	80	0	19	0	0.70
61598047--61598112	8	8.5	8	70	18	50	22	43	28	4	1.73
61598054--61598112	23	2.6	23	97	0	109	23	42	28	5	1.75
61598147--61598201	12	4.8	12	75	20	64	81	0	18	0	0.68
61598153--61598202	20	2.5	19	84	9	64	82	0	18	0	0.68
61598147--61598202	13	4.3	13	78	13	62	82	0	17	0	0.68
61600477--61600511	3	11.7	3	88	11	54	68	0	2	28	1.04
61602039--61602288	132	1.9	132	81	1	304	24	24	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61602432--61602845	88	4.7	88	93	2	681	24	24	22	28	1.99
61609789--61609823	3	11.7	3	88	11	54	68	0	2	28	1.04
61611716--61611751	18	1.9	19	88	5	56	52	8	8	30	1.61
61612748--61612802	22	2.5	21	91	2	74	10	18	36	34	1.86
61612760--61612802	22	2.0	22	100	0	86	11	23	37	27	1.89
61612872--61612912	17	2.3	18	87	8	57	58	4	4	31	1.40
61615806--61616094	87	3.4	85	72	12	261	26	21	20	31	1.98
61615806--61616094	44	6.7	43	71	12	211	26	21	20	31	1.98
61616052--61616450	88	4.6	87	84	6	382	23	22	22	31	1.99
61616125--61616260	43	3.2	43	64	21	104	22	19	25	32	1.98
61616254--61616392	44	3.2	44	67	8	138	28	23	21	26	1.99
61616115--61616450	88	3.9	88	88	3	439	24	22	22	30	1.99
61616298--61616436	44	3.2	44	66	15	124	24	21	25	28	1.99
61616115--61616450	174	1.9	173	83	4	433	24	22	22	30	1.99
61624473--61624541	18	3.9	18	73	7	70	28	13	11	46	1.78
61625638--61625676	12	3.0	13	88	11	62	61	2	0	35	1.10
61625638--61625676	14	2.7	14	92	4	60	61	2	0	35	1.10
61625843--61625879	18	2.1	18	90	10	58	62	5	0	32	1.18
61628282--61628323	11	3.9	11	81	12	52	11	2	33	52	1.51
61628955--61628988	16	2.1	17	88	5	52	17	5	8	67	1.37
61629205--61629327	58	2.1	58	82	7	142	42	9	17	30	1.81
61630545--61630597	16	3.4	15	75	17	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61631994--61632052	3	19.0	3	77	10	57	30	0	3	66	1.08
61637114--61637184	17	4.4	15	75	20	56	74	0	22	2	0.94
61637111--61637176	21	3.2	21	76	18	59	75	0	21	3	0.93
61637292--61637374	44	1.9	43	85	2	112	26	13	31	28	1.94
61638498--61638722	98	2.3	99	88	1	317	33	24	19	23	1.97
61638695--61639777	50	22.7	49	73	11	879	31	20	20	27	1.98
61638697--61639448	95	7.9	95	89	0	1072	31	20	20	27	1.97
61638704--61639737	190	5.4	190	84	4	1117	31	20	20	26	1.98
61639090--61639777	335	2.1	335	92	0	1144	30	21	21	26	1.98
61639373--61639777	95	4.2	95	87	2	551	31	20	21	26	1.98
61639759--61639813	18	3.1	18	100	0	110	38	21	23	16	1.93
61642580--61642747	47	3.6	45	71	19	141	45	2	3	48	1.35
61642506--61642713	91	2.3	91	91	0	326	45	3	3	47	1.37
61642527--61642688	44	3.6	43	70	19	125	45	1	3	49	1.30
61642628--61642688	28	2.2	28	85	5	81	45	0	3	50	1.17
61643070--61643111	15	2.7	16	82	14	52	45	0	2	52	1.13
61643061--61643102	15	2.9	15	82	10	52	47	0	0	52	1.00
61643214--61643248	18	2.0	17	88	5	52	45	0	0	54	0.99
61643048--61643361	157	2.0	157	95	0	565	47	4	3	44	1.41
61643413--61643503	45	2.0	44	85	2	119	35	28	5	30	1.80
61643484--61643551	16	4.2	16	88	0	100	35	33	0	30	1.58
61654572--61654624	16	3.4	15	75	17	54	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61664535--61664586	26	2.1	25	82	7	61	38	0	0	61	0.96
61668074--61668098	2	12.5	2	100	0	50	52	0	0	48	1.00
61678109--61678166	9	6.4	9	91	0	89	24	6	22	46	1.76
61680922--61681080	18	8.8	18	84	2	194	30	23	13	32	1.93
61680922--61681080	54	2.9	54	87	1	230	30	23	13	32	1.93
61680920--61681082	36	4.5	36	89	1	220	30	22	14	32	1.94
61694807--61694847	6	7.0	6	88	5	57	17	4	43	34	1.70
61694807--61694847	18	2.4	17	88	8	64	17	4	43	34	1.70
61704526--61704688	18	9.4	17	79	9	143	46	11	13	28	1.77
61704526--61704706	34	5.2	34	76	10	170	45	11	13	29	1.79
61704536--61704706	88	1.9	88	88	4	256	44	11	12	31	1.78
61704526--61704705	70	2.6	71	86	6	244	45	11	13	30	1.79
61704526--61704688	17	9.4	17	79	9	152	46	11	13	28	1.77
61704501--61704706	18	11.9	17	74	14	79	43	10	12	33	1.76
61704736--61704814	19	3.9	18	67	20	50	46	10	13	29	1.76
61704775--61704817	18	2.4	18	88	7	61	46	6	13	32	1.71
61704795--61704970	79	2.2	78	86	4	237	45	13	13	28	1.80
61704802--61704970	43	4.1	42	75	16	138	46	13	13	26	1.81
61704846--61704929	35	2.4	36	87	2	125	46	13	14	26	1.81
61704846--61704928	18	4.7	18	75	14	82	45	13	14	26	1.81
61704900--61704949	26	1.9	27	92	8	86	50	16	10	24	1.75
61704847--61705016	17	10.2	17	67	18	99	43	12	11	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61704881--61704970	44	2.1	44	91	6	148	47	13	12	26	1.78
61704925--61705016	35	2.6	35	81	6	116	42	10	10	35	1.75
61704832--61705005	79	2.2	79	90	2	271	43	13	12	31	1.81
61705067--61705115	17	2.8	17	85	11	64	44	8	16	30	1.76
61705905--61705994	6	14.3	6	82	9	92	1	21	0	77	0.83
61705941--61705991	21	2.5	20	84	9	59	1	23	0	74	0.92
61706129--61706167	17	2.2	17	86	9	51	2	15	15	66	1.36
61706554--61706652	30	3.4	28	77	13	83	39	1	22	37	1.61
61706581--61706705	30	4.2	28	80	10	124	40	3	21	34	1.69
61706566--61706698	59	2.2	60	79	10	139	40	2	24	32	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230