genome.fa.s19.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  185  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55532615--55532647	16	2.1	16	100	0	66	36	6	36	21	1.78
55532822--55532889	16	4.2	16	74	20	54	54	1	0	44	1.09
55532842--55532889	18	2.8	18	74	22	50	56	0	0	43	0.99
55532831--55532872	15	2.9	15	82	10	52	52	0	0	47	1.00
55532960--55532996	16	2.2	17	86	13	51	54	0	2	43	1.14
55532825--55533001	59	3.0	58	70	17	164	51	3	1	42	1.30
55532979--55533146	47	3.7	46	70	18	143	47	4	2	45	1.37
55532936--55533220	91	3.0	93	85	6	328	48	3	2	45	1.35
55533038--55533098	28	2.2	28	85	5	81	50	3	0	45	1.17
55533013--55533220	91	2.3	91	93	0	344	46	4	3	46	1.39
55533038--55533180	44	3.2	43	68	16	119	48	3	2	46	1.31
55533063--55533201	47	3.0	47	68	17	137	49	4	2	43	1.34
55536265--55536300	15	2.4	15	100	0	72	44	11	8	36	1.70
55536511--55536536	6	4.3	6	100	0	52	50	0	0	50	1.00
55536979--55537003	13	1.9	13	100	0	50	20	16	8	56	1.65
55537492--55537559	29	2.3	29	95	5	120	38	22	10	29	1.87
55538647--55538675	15	1.9	15	100	0	58	62	24	6	6	1.45
55543000--55543040	21	2.0	21	90	0	64	24	2	24	48	1.63
55544934--55545142	39	5.3	39	90	2	296	25	26	22	25	2.00
55544934--55545192	78	3.3	79	84	8	298	25	26	21	26	2.00
55552955--55553215	39	6.7	40	87	8	319	24	26	22	25	2.00
55555864--55555906	23	1.9	23	90	4	70	16	0	9	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55570698--55570722	3	8.3	3	100	0	50	68	0	32	0	0.90
55572565--55572603	20	2.1	17	86	13	51	69	2	15	12	1.30
55586452--55586485	17	1.9	18	94	5	61	5	26	17	50	1.69
55588649--55588689	13	3.2	13	75	25	50	0	31	21	46	1.52
55588847--55588871	12	2.1	12	100	0	50	24	16	8	52	1.70
55592134--55592305	72	2.4	72	84	4	242	26	6	12	54	1.62
55598320--55598366	22	2.1	23	88	4	69	17	4	31	46	1.67
55598424--55598525	28	3.4	28	76	17	89	45	0	11	43	1.40
55598638--55598907	125	2.2	127	85	5	372	40	12	17	29	1.86
55599819--55599947	58	2.2	59	83	10	158	52	4	5	37	1.45
55602374--55602434	29	2.1	30	81	9	72	37	14	18	29	1.90
55604247--55604293	16	2.9	16	96	0	85	53	6	0	40	1.27
55614895--55615026	19	6.8	19	89	3	201	37	14	9	38	1.79
55614872--55615026	38	3.9	38	88	6	202	38	13	9	38	1.76
55614906--55615025	59	2.0	59	93	0	204	38	13	10	38	1.78
55616339--55616379	22	1.9	21	85	5	55	31	2	0	65	1.05
55629189--55629218	13	2.3	13	100	0	60	20	6	13	60	1.55
55631441--55631470	13	2.3	13	100	0	60	60	13	6	20	1.55
55636916--55637092	27	6.6	26	77	13	103	47	18	11	22	1.80
55636942--55637175	54	4.4	52	81	10	233	45	19	14	21	1.85
55636916--55637173	81	3.2	81	78	10	244	46	17	13	22	1.83
55636942--55637162	27	8.2	26	76	8	167	45	18	14	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55636942--55637188	27	9.2	26	75	9	156	45	19	14	20	1.85
55637367--55637442	26	2.9	26	86	3	82	15	23	22	38	1.93
55637549--55637642	28	3.4	28	83	2	118	23	24	24	27	2.00
55648167--55648220	21	2.5	22	80	14	60	51	11	7	29	1.64
55660280--55660477	45	4.5	44	73	9	168	29	18	24	27	1.98
55660628--55660725	44	2.2	45	89	5	146	30	14	27	27	1.95
55660746--55660890	44	3.3	43	70	12	125	32	22	24	21	1.98
55660736--55660938	88	2.3	88	93	0	352	32	23	22	22	1.98
55660790--55660928	44	3.2	44	70	8	147	32	23	21	23	1.98
55661276--55661361	44	2.0	44	85	0	118	41	30	12	15	1.84
55662496--55662537	22	1.9	22	85	9	59	30	2	0	66	1.04
55665205--55665401	98	2.0	98	93	0	340	37	24	10	28	1.88
55666069--55666117	24	2.0	26	88	8	75	57	4	8	30	1.47
55666700--55666810	57	1.9	57	94	0	195	19	25	2	52	1.59
55666947--55667076	19	6.7	19	87	3	197	36	13	10	38	1.80
55666947--55667075	59	2.2	59	90	2	199	37	13	10	38	1.79
55668571--55668604	12	2.7	13	86	9	52	82	0	17	0	0.67
55670387--55670467	21	3.8	21	78	4	74	38	23	22	16	1.93
55671659--55671690	16	2.1	16	94	5	57	40	0	0	59	0.97
55671646--55671698	27	2.1	26	86	10	74	43	0	0	56	0.99
55672284--55672325	18	2.4	19	84	11	54	35	0	14	50	1.43
55680157--55680277	54	2.2	54	83	2	145	21	27	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55680993--55681162	83	2.0	83	100	0	340	45	20	7	27	1.76
55687263--55687547	27	10.6	27	79	2	196	33	16	20	30	1.94
55687263--55687547	81	3.5	81	75	2	259	33	16	20	30	1.94
55690201--55690265	31	2.1	32	85	8	89	16	4	20	58	1.56
55690777--55691103	81	4.0	81	82	2	361	35	17	19	27	1.94
55690777--55691103	27	12.1	27	85	1	314	35	17	19	27	1.94
55693407--55693634	124	1.8	124	89	0	357	33	17	15	32	1.92
55697106--55697148	18	2.3	19	84	4	52	53	13	4	27	1.60
55701006--55701055	25	2.0	25	92	0	82	34	38	14	14	1.85
55704673--55704725	20	2.7	19	77	11	54	49	0	0	50	1.00
55704672--55704721	21	2.5	20	75	15	57	48	0	0	52	1.00
55704681--55704715	13	2.5	15	90	9	56	45	0	0	54	0.99
55708540--55708634	44	2.1	46	88	7	142	35	26	4	33	1.76
55708616--55708687	16	4.5	16	87	0	108	27	26	5	40	1.78
55718117--55718211	35	2.7	35	77	11	95	42	1	4	52	1.27
55720023--55720053	6	5.2	6	92	0	53	70	0	29	0	0.87
55720188--55720229	5	8.4	5	79	10	50	38	0	19	42	1.51
55724435--55724517	43	1.9	43	90	0	130	22	14	22	39	1.91
55725403--55725439	9	4.1	9	89	0	56	45	10	10	32	1.74
55727932--55727982	24	2.1	24	85	0	66	31	11	11	45	1.77
55728654--55728790	35	3.9	34	80	5	130	24	21	18	35	1.95
55728657--55728788	70	1.9	70	80	0	156	24	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55736100--55736154	17	3.3	15	82	14	56	54	3	3	38	1.36
55738446--55738505	24	2.6	23	83	2	75	26	11	18	43	1.84
55743771--55743807	18	2.1	18	95	5	67	45	13	16	24	1.83
55757048--55757117	8	8.4	8	76	17	63	60	5	2	31	1.35
55757047--55757118	18	4.2	17	73	16	60	61	5	2	30	1.33
55761603--55761665	30	2.1	30	85	2	83	11	19	1	68	1.28
55764082--55764144	33	1.9	33	93	0	108	25	1	38	34	1.66
55764082--55764144	16	3.9	16	89	4	99	25	1	38	34	1.66
55764125--55764215	45	2.0	45	85	2	121	27	6	28	37	1.82
55764380--55764414	18	2.0	17	88	5	52	54	0	0	45	0.99
55764621--55764655	18	2.0	17	88	5	52	54	0	0	45	0.99
55764363--55764866	120	4.2	120	95	1	911	47	5	2	44	1.41
55767890--55767999	33	3.3	33	80	11	127	31	9	17	41	1.80
55767946--55768060	51	2.3	51	95	3	205	26	7	19	46	1.77
55768045--55768072	12	2.3	12	100	0	56	21	0	21	57	1.41
55772930--55772965	16	2.2	16	95	0	63	55	2	0	41	1.14
55772974--55773013	16	2.5	16	87	0	53	42	0	0	57	0.98
55773142--55773193	9	5.3	9	77	22	52	32	1	1	63	1.16
55773143--55773217	32	2.4	31	86	6	107	29	2	1	66	1.13
55773539--55773745	103	2.0	103	97	0	387	34	10	23	30	1.89
55775630--55775702	38	1.9	38	86	8	105	2	28	2	65	1.20
55775645--55775706	20	3.2	19	71	15	56	3	25	3	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55777865--55777913	23	2.1	23	92	0	80	18	18	28	34	1.94
55783753--55783830	22	3.6	21	76	10	68	73	0	23	3	1.00
55783761--55783810	20	2.5	19	81	15	57	70	0	26	4	1.05
55796337--55796380	22	1.9	24	86	9	65	18	11	54	15	1.70
55807262--55807599	147	2.2	152	77	8	350	31	0	15	52	1.47
55811149--55811182	15	2.3	15	90	5	52	38	0	8	52	1.33
55818170--55818200	15	2.0	16	93	6	55	25	0	45	29	1.54
55827437--55827515	34	2.3	34	95	0	140	40	0	39	20	1.52
55827453--55827515	19	3.5	19	66	16	53	41	0	38	20	1.53
55836005--55836036	16	1.9	17	93	6	57	6	15	3	75	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230