genome.fa.s19.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  111  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32140853--32140951	28	3.6	28	93	1	155	26	13	29	31	1.93
32140853--32140964	28	4.1	27	88	3	118	28	12	26	32	1.93
32146059--32146176	55	2.1	55	84	6	159	25	22	13	38	1.90
32146792--32146846	20	2.8	20	85	0	74	29	18	27	25	1.98
32149293--32149357	20	3.3	19	73	16	51	38	16	21	23	1.93
32150623--32150656	18	1.9	18	88	5	52	8	35	2	52	1.47
32151709--32151759	13	3.6	14	78	19	61	5	11	9	72	1.27
32151686--32151770	12	6.3	12	75	15	53	10	10	7	71	1.30
32151686--32151773	15	6.5	13	74	18	65	11	11	6	70	1.33
32151725--32151773	25	2.0	25	84	8	64	10	10	6	73	1.25
32151686--32151759	28	2.6	28	84	2	103	9	12	8	70	1.34
32151686--32151771	28	3.1	28	74	12	88	10	10	6	72	1.29
32151736--32151783	25	1.9	25	82	0	60	16	8	2	72	1.18
32151750--32151797	17	3.2	15	78	16	55	18	6	4	70	1.25
32151686--32151791	57	1.9	56	81	11	128	13	11	6	68	1.37
32153307--32153371	20	3.3	19	73	16	51	38	16	21	23	1.93
32155388--32155438	10	5.1	10	77	15	52	35	11	23	29	1.90
32155388--32155439	20	2.6	21	87	6	72	34	11	25	28	1.91
32158152--32158198	20	2.3	20	85	0	67	29	36	12	21	1.91
32159732--32159776	22	2.1	21	87	4	63	82	2	11	4	0.91
32159732--32159767	10	3.8	9	89	10	54	86	2	8	2	0.77
32162568--32162613	20	2.4	19	81	3	56	30	36	13	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32166248--32166291	22	2.0	22	95	0	79	25	36	4	34	1.76
32171910--32171968	10	5.9	10	73	13	50	33	11	25	28	1.91
32171910--32171968	20	2.9	19	83	14	66	33	11	25	28	1.91
32173621--32173652	12	2.7	12	95	0	55	18	21	0	59	1.38
32173634--32173695	27	2.3	27	83	10	74	9	19	1	69	1.25
32173658--32173777	12	10.0	12	68	19	54	8	18	3	70	1.27
32173636--32173694	14	4.3	14	74	16	52	10	16	1	71	1.22
32173701--32173759	18	3.3	18	78	0	64	5	15	6	72	1.23
32173656--32173763	6	17.7	6	67	9	58	6	18	3	71	1.23
32174782--32174818	10	3.7	10	86	13	58	2	8	8	81	0.97
32174781--32174817	11	3.5	11	78	14	51	2	8	5	83	0.88
32176211--32176258	10	4.7	10	75	14	53	29	12	29	29	1.93
32176211--32176258	20	2.3	21	86	10	64	29	12	29	29	1.93
32186788--32186845	29	2.0	30	82	3	73	55	10	3	31	1.50
32243302--32243856	27	20.6	27	79	6	536	43	19	18	17	1.88
32251187--32251399	27	8.0	27	85	4	288	42	18	21	17	1.89
32251188--32251398	80	2.6	81	86	3	293	42	18	21	18	1.89
32251179--32251403	53	4.2	53	86	5	301	43	17	20	18	1.88
32287166--32287430	50	5.3	50	83	2	302	21	29	22	27	1.99
32287402--32287457	27	2.1	27	96	0	103	21	37	14	26	1.92
32287352--32287508	77	2.0	77	96	0	287	21	34	18	25	1.96
32287429--32287724	50	5.9	50	86	5	373	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32287302--32287555	127	2.0	127	92	0	427	21	32	19	26	1.97
32287254--32287607	177	2.0	177	89	0	546	20	31	20	27	1.98
32287215--32287637	227	1.9	227	90	0	675	21	29	21	27	1.99
32290340--32290417	28	2.8	27	80	7	93	53	1	12	32	1.47
32290684--32290729	24	1.9	24	81	0	56	52	4	6	36	1.47
32291414--32291481	20	3.6	19	83	11	77	70	4	20	4	1.22
32291864--32291914	26	1.9	27	88	4	77	11	3	41	43	1.60
32291995--32292041	16	3.0	15	77	17	51	14	0	4	80	0.85
32292368--32292828	176	2.6	175	91	0	769	28	20	19	32	1.96
32293653--32293703	26	1.9	27	88	4	77	15	1	41	41	1.58
32294491--32294534	11	3.9	11	82	5	52	63	2	0	34	1.07
32296274--32296628	27	13.3	27	86	5	497	42	20	20	16	1.89
32296274--32296628	53	6.6	54	87	4	497	42	20	20	16	1.89
32296274--32296628	80	4.4	81	88	4	515	42	20	20	16	1.89
32310533--32310586	25	2.2	25	83	6	65	33	24	14	27	1.94
32312763--32312810	14	3.2	14	72	16	51	39	4	12	43	1.62
32332125--32332175	8	6.5	8	77	18	54	1	45	1	50	1.24
32332125--32332175	15	3.3	15	76	23	52	1	45	1	50	1.24
32332901--32333430	27	19.6	27	81	3	537	42	21	17	18	1.89
32333598--32333669	27	2.8	27	83	6	78	18	22	20	38	1.93
32333795--32333867	28	2.6	28	84	0	83	23	31	24	20	1.98
32340820--32341228	27	15.3	27	82	3	477	41	17	22	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32341387--32341458	26	2.8	25	85	6	83	8	22	27	41	1.82
32341572--32341659	28	3.2	27	85	6	122	22	23	23	29	1.99
32351501--32351588	28	3.1	27	87	8	113	29	19	18	32	1.95
32354957--32355038	24	3.4	24	89	0	119	48	23	6	21	1.72
32354964--32355033	11	6.0	11	69	12	50	51	24	4	20	1.65
32354957--32355090	24	5.6	24	82	3	117	46	20	6	26	1.75
32355108--32355282	27	6.5	27	84	2	199	20	20	21	37	1.94
32355108--32355321	81	2.6	80	83	2	232	20	19	21	38	1.93
32355111--32355359	27	9.3	27	82	5	177	22	18	20	39	1.93
32366063--32366096	17	1.9	18	94	5	61	41	5	14	38	1.70
32367563--32367615	5	10.8	5	77	4	54	18	7	0	73	1.06
32367571--32367623	24	2.2	24	83	6	63	22	5	0	71	1.06
32368917--32368973	23	2.5	21	78	15	60	14	3	8	73	1.20
32372881--32372934	24	2.2	24	83	6	65	68	1	1	27	1.10
32372881--32372936	15	3.8	15	76	9	53	67	1	1	28	1.10
32373142--32373180	19	2.0	21	85	10	55	69	5	10	15	1.34
32373355--32373423	21	3.2	22	75	21	65	37	15	7	39	1.76
32373374--32373432	19	3.0	21	85	14	90	35	15	10	38	1.81
32377710--32377892	101	1.8	102	86	1	269	25	15	26	32	1.96
32377706--32377898	51	3.8	51	78	6	212	25	15	26	32	1.96
32380846--32380968	6	20.2	6	71	14	56	71	3	4	21	1.17
32380885--32380977	18	5.2	17	76	13	73	75	4	1	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32380885--32380978	12	8.0	11	78	12	73	74	4	1	20	1.05
32381704--32381777	37	2.0	37	100	0	148	64	10	8	16	1.47
32381864--32381933	4	17.0	4	74	21	56	70	0	5	24	1.09
32381864--32381933	9	8.5	8	74	17	56	70	0	5	24	1.09
32381867--32381927	26	2.3	27	81	13	74	70	0	6	22	1.10
32381876--32381943	22	3.2	21	78	18	70	69	0	8	22	1.16
32381881--32381933	19	2.7	19	85	11	63	71	0	3	24	1.02
32386860--32386909	10	4.9	10	80	20	50	30	4	6	60	1.39
32389110--32389158	22	2.2	22	88	0	80	34	0	36	28	1.58
32390571--32390755	40	4.7	40	82	6	216	25	27	21	24	1.99
32390571--32390753	79	2.3	80	82	9	214	25	27	21	25	1.99
32398484--32398668	79	2.3	81	82	9	220	25	27	23	24	2.00
32398465--32398668	40	5.1	40	80	8	220	25	26	23	25	2.00
32400453--32400675	40	5.6	40	84	3	227	26	27	21	25	1.99
32400607--32400684	40	1.9	41	82	10	97	26	28	21	23	1.99
32408405--32408627	40	5.6	40	85	3	227	26	27	20	24	1.99
32408559--32408636	40	1.9	41	82	10	97	28	28	20	23	1.99
32427847--32427899	27	2.0	27	88	0	79	15	18	22	43	1.87
32430975--32431041	21	3.2	21	79	8	82	38	19	22	19	1.93
32430981--32431050	21	3.3	21	78	7	79	42	17	22	17	1.88
32430966--32431069	42	2.5	42	83	9	131	43	16	20	20	1.88
32430971--32431078	21	5.1	21	74	12	71	43	16	18	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32439453--32439542	39	2.3	40	88	1	128	26	28	21	23	1.99
32447317--32447406	39	2.3	40	88	1	128	26	28	21	23	1.99
32455151--32455237	27	3.2	27	85	11	115	26	17	16	40	1.90
32456730--32456783	25	2.2	25	82	0	63	20	44	11	24	1.83
32460800--32460829	12	2.4	13	94	5	53	20	6	6	66	1.38
32465099--32465276	49	3.6	50	78	6	200	24	19	27	28	1.98
32465095--32465276	50	3.6	49	77	10	163	25	18	27	28	1.98
32465097--32465289	100	1.9	100	86	5	273	25	18	27	27	1.98
32468597--32468631	18	1.9	18	88	0	52	31	22	17	28	1.96
32468949--32469015	33	2.0	35	82	8	86	47	1	2	47	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230