genome.fa.s19.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  123  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35812586--35813049	100	4.4	103	78	12	505	27	22	28	21	1.99
35812738--35812949	117	1.8	117	86	0	307	27	22	27	22	1.99
35812689--35812999	167	1.9	166	87	2	462	27	22	29	20	1.98
35812620--35813055	217	2.0	216	96	1	811	27	22	28	21	1.99
35812586--35813098	266	1.9	269	84	4	696	27	22	28	21	1.99
35818529--35818688	80	2.0	80	96	2	295	35	21	14	28	1.92
35819459--35819515	24	2.4	24	81	0	60	43	21	15	19	1.87
35821658--35821697	17	2.4	17	87	8	55	2	20	2	75	1.04
35822965--35823023	5	11.4	5	82	7	55	49	1	0	49	1.11
35823556--35823664	51	2.2	50	85	8	141	43	2	3	50	1.34
35823755--35823787	16	2.0	16	94	5	57	48	0	0	51	1.00
35828665--35828689	12	2.1	12	100	0	50	44	8	8	40	1.63
35833454--35833493	20	2.0	21	90	5	64	52	0	0	47	1.00
35833424--35833518	19	5.0	19	71	6	59	41	0	2	56	1.11
35835968--35836275	102	3.0	100	85	1	409	36	19	12	31	1.89
35838942--35838993	27	1.9	27	84	7	70	36	3	11	48	1.58
35842317--35842472	27	5.8	27	78	0	168	41	20	17	20	1.90
35842325--35842472	54	2.7	54	86	0	188	41	18	18	20	1.90
35845414--35845545	55	2.4	54	80	7	151	19	25	30	25	1.98
35847128--35847208	27	3.0	27	81	3	92	22	20	25	30	1.98
35853548--35853586	18	2.2	18	85	0	51	61	2	23	12	1.43
35861280--35861393	54	2.1	54	83	3	149	19	30	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864432--35864501	25	2.7	26	84	8	90	22	25	22	28	1.99
35870299--35870435	50	2.7	50	81	0	166	28	20	29	21	1.98
35870694--35870732	20	2.0	20	90	10	62	56	5	23	15	1.59
35871178--35871580	198	2.0	198	86	4	551	38	8	18	33	1.82
35878121--35878262	50	2.9	48	85	3	149	27	23	28	21	1.99
35878137--35878314	50	3.6	49	79	11	152	28	21	28	21	1.99
35878516--35878554	20	2.0	20	90	10	62	56	5	23	15	1.59
35883237--35883267	15	2.1	15	100	0	62	25	25	25	22	2.00
35887905--35887934	7	4.3	7	100	0	60	30	0	56	13	1.37
35890726--35890773	19	2.7	18	76	20	55	52	4	2	41	1.32
35890742--35890827	37	2.3	38	82	9	97	52	5	3	38	1.43
35891233--35891272	19	2.1	19	86	9	55	32	2	5	60	1.32
35904876--35904916	21	2.0	21	90	0	64	29	21	2	46	1.64
35905062--35905124	19	3.3	18	74	17	56	31	3	1	63	1.19
35906064--35906103	7	5.7	7	100	0	80	27	0	15	57	1.38
35906063--35906109	21	2.2	22	88	11	80	27	4	14	53	1.60
35907072--35907200	59	2.1	61	88	5	192	34	4	7	53	1.50
35910241--35910312	25	2.9	25	77	8	74	22	23	1	52	1.55
35910380--35910861	123	3.9	124	85	3	603	28	15	16	39	1.89
35910411--35911033	123	5.1	124	78	11	587	28	16	15	39	1.89
35911124--35911258	28	4.7	29	75	14	109	38	16	1	43	1.57
35911160--35911226	33	2.0	33	91	5	109	41	11	0	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35914209--35914383	93	1.9	94	91	1	289	47	3	10	38	1.56
35914336--35914462	49	2.6	48	85	5	157	48	1	9	40	1.45
35915371--35915427	29	2.0	29	82	6	71	35	8	19	36	1.83
35927091--35927133	21	2.0	21	86	0	59	11	6	32	48	1.66
35931027--35931061	7	5.0	7	92	0	61	82	0	2	14	0.77
35931042--35931090	24	2.0	25	84	4	64	75	2	0	22	0.90
35931329--35931361	16	2.0	17	88	5	50	48	18	6	27	1.71
35941301--35941332	3	10.7	3	93	0	55	68	3	0	28	1.04
35943585--35943617	12	2.8	12	95	0	57	72	3	18	6	1.18
35944481--35944514	17	2.1	17	88	5	52	32	8	11	47	1.71
35945205--35945308	51	2.0	51	100	0	208	34	21	11	32	1.89
35947912--35948144	45	5.2	45	94	0	394	38	15	20	25	1.92
35948919--35949054	68	2.0	68	100	0	272	48	11	14	25	1.78
35949425--35949493	26	2.7	26	84	4	86	24	21	27	26	1.99
35950870--35950902	5	6.8	5	96	3	59	42	0	15	42	1.46
35955262--35955486	79	2.8	78	81	10	258	24	26	22	26	2.00
35955262--35955486	119	1.9	120	81	9	282	24	26	22	26	2.00
35955262--35955486	40	5.7	39	83	8	235	24	26	22	26	2.00
35960578--35960613	18	2.0	18	89	10	56	44	0	22	33	1.53
35967598--35967625	12	2.3	12	100	0	56	85	0	14	0	0.59
35967676--35967715	21	1.9	21	89	0	62	45	5	30	20	1.72
35969514--35969555	22	2.0	21	90	4	66	35	0	11	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35987861--35987915	21	2.7	21	78	15	71	61	5	0	32	1.19
35995982--35996006	10	2.5	10	100	0	50	48	20	0	32	1.50
35997653--35997847	42	4.6	43	79	8	213	35	25	16	22	1.95
35997653--35997861	84	2.5	84	92	0	346	36	24	15	23	1.94
36005991--36006041	24	2.1	25	88	3	77	25	21	25	27	1.99
36006006--36006060	25	2.2	25	83	0	65	25	23	21	29	1.99
36015355--36015422	25	2.7	25	95	0	127	22	27	29	20	1.98
36021355--36021532	27	6.6	27	83	3	178	30	28	14	26	1.95
36021376--36021531	82	1.9	81	86	3	224	30	28	14	26	1.95
36029428--36029604	27	6.6	27	81	5	169	30	28	14	26	1.95
36029428--36029604	55	3.3	54	81	4	196	30	28	14	26	1.95
36029449--36029603	82	1.9	80	85	5	213	30	28	14	26	1.95
36033682--36033745	31	2.1	31	96	0	119	45	15	18	20	1.86
36041008--36041117	56	2.0	56	94	0	193	22	26	16	34	1.95
36041944--36042024	42	1.9	42	87	0	117	19	29	23	27	1.98
36042740--36042803	20	3.2	20	64	16	51	26	15	37	20	1.92
36042938--36043003	20	3.3	20	62	8	53	27	16	34	21	1.95
36042716--36043005	40	7.3	40	85	1	386	33	16	28	21	1.95
36048013--36048182	47	3.6	47	90	1	250	32	8	30	28	1.86
36049607--36049752	43	3.4	43	97	0	274	23	15	34	26	1.94
36049734--36049807	29	2.6	29	89	4	105	25	16	32	25	1.96
36050120--36050395	40	6.9	40	83	3	272	24	23	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36050120--36050396	120	2.3	121	81	4	310	24	23	28	24	2.00
36064608--36064666	12	4.5	13	72	17	50	69	3	8	18	1.28
36065745--36065841	6	15.7	6	68	10	61	71	3	18	7	1.23
36065745--36065796	18	2.9	18	82	0	68	73	5	15	5	1.22
36065802--36065839	13	2.8	13	82	17	51	73	0	18	7	1.06
36065746--36065853	24	4.9	21	67	21	51	71	3	18	6	1.23
36065856--36065918	33	1.9	33	84	12	85	53	6	26	12	1.62
36072849--36072878	13	2.3	13	94	0	51	43	6	0	50	1.28
36076114--36076178	26	2.4	27	82	14	82	6	18	3	72	1.19
36076135--36076183	6	7.8	6	82	8	62	4	18	2	75	1.06
36079385--36079417	12	2.8	12	95	4	59	24	15	15	45	1.84
36079478--36079527	6	8.2	6	81	16	50	2	20	2	76	0.99
36079467--36079537	37	1.9	37	86	11	101	2	18	2	76	1.04
36079463--36079523	16	3.8	16	77	14	63	3	19	1	75	1.03
36080467--36080496	10	3.0	10	100	0	60	0	10	0	90	0.47
36082231--36082327	30	3.2	30	75	2	106	28	15	26	28	1.96
36086138--36086201	33	1.9	34	90	3	103	75	4	7	12	1.18
36086143--36086235	15	6.0	14	75	16	69	75	3	10	10	1.16
36087260--36087301	18	2.3	18	87	0	57	71	4	16	7	1.26
36099037--36099137	52	1.9	52	95	0	184	32	21	18	26	1.97
36100171--36100197	10	2.7	10	100	0	54	92	7	0	0	0.38
36114032--36114065	18	1.9	18	88	5	52	8	35	2	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36115107--36115144	17	2.3	17	86	4	51	2	13	13	71	1.26
36115136--36115194	12	4.8	12	71	20	50	16	8	3	71	1.25
36115148--36115206	12	4.5	13	78	19	61	15	5	5	74	1.17
36117194--36117245	23	2.3	22	75	21	54	9	23	1	65	1.32
36121354--36121407	20	2.7	20	82	0	63	24	20	18	37	1.94
36121354--36121427	30	2.5	30	86	8	98	21	20	18	39	1.93
36121354--36121418	20	3.2	20	71	16	53	23	21	16	38	1.93
36123011--36123040	11	2.7	11	89	0	51	80	6	0	13	0.91
36123049--36123105	11	4.8	11	78	19	53	78	3	10	7	1.05
36123046--36123106	12	5.0	12	73	15	54	77	3	11	8	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230