genome.fa.s19.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  130  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37985586--37985625	14	2.7	15	92	7	73	17	12	5	65	1.44
38003120--38003165	20	2.3	20	84	0	56	23	19	17	39	1.92
38003112--38003185	30	2.5	30	84	8	80	22	20	18	37	1.94
38005241--38005278	10	3.8	10	83	13	51	26	15	28	28	1.96
38005243--38005289	20	2.3	20	92	0	76	23	17	34	25	1.96
38006603--38006648	20	2.3	20	85	7	58	26	19	17	36	1.94
38006595--38006668	30	2.5	30	84	8	89	24	20	18	36	1.95
38009436--38009469	18	1.9	18	88	5	52	8	35	2	52	1.47
38010483--38010546	22	3.0	21	84	6	76	4	12	3	79	1.00
38010492--38010527	10	3.8	9	89	10	54	2	8	2	86	0.77
38012181--38012245	20	3.3	19	73	16	51	38	16	21	23	1.93
38013131--38013188	10	5.7	10	76	11	64	29	27	13	29	1.94
38013131--38013191	20	3.0	20	83	9	79	27	26	13	32	1.93
38014605--38014632	8	3.5	8	100	0	56	89	0	10	0	0.49
38014569--38014642	16	4.3	18	69	19	59	74	2	16	6	1.15
38017222--38017262	21	2.0	21	85	0	55	73	4	17	4	1.19
38017243--38017277	18	1.9	18	88	0	52	80	5	11	2	1.00
38017285--38017341	13	4.3	13	76	10	53	71	1	17	8	1.19
38017285--38017341	27	2.2	26	84	9	71	71	1	17	8	1.19
38024040--38024080	17	2.4	18	80	8	50	14	24	4	56	1.58
38024011--38024064	24	2.2	25	78	15	60	11	22	3	62	1.43
38026315--38026342	13	2.2	13	100	0	56	14	7	10	67	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38028998--38029055	10	5.7	10	81	4	71	29	25	13	31	1.94
38028998--38029058	20	3.0	20	88	9	88	27	24	13	34	1.93
38031251--38031280	11	2.7	11	94	0	51	83	6	3	6	0.90
38032569--38032642	39	1.9	36	84	15	96	62	2	22	12	1.42
38032606--38032668	33	1.9	33	84	12	85	53	6	26	12	1.62
38034268--38034321	20	2.7	20	82	0	63	24	20	18	37	1.94
38034268--38034341	30	2.5	30	86	8	98	21	20	18	39	1.93
38034268--38034332	20	3.2	20	71	16	53	23	21	16	38	1.93
38036861--38036892	15	2.1	16	94	5	57	71	0	21	6	1.07
38036975--38037008	18	1.9	18	88	5	52	52	2	35	8	1.47
38038273--38038326	20	2.7	20	82	0	63	24	20	18	37	1.94
38038273--38038346	30	2.5	30	86	8	98	21	20	18	39	1.93
38038273--38038337	20	3.2	20	71	16	53	23	21	16	38	1.93
38039981--38040054	30	2.5	30	80	8	80	24	18	20	36	1.95
38048418--38048483	30	2.2	30	89	5	98	31	28	13	25	1.94
38050190--38050220	12	2.6	12	100	0	62	80	6	0	12	0.89
38051132--38051202	37	1.9	37	86	11	101	77	2	18	1	0.97
38051131--38051202	16	4.5	16	77	10	67	77	2	18	1	0.96
38051142--38051191	6	8.2	6	85	14	59	78	2	20	0	0.86
38051142--38051202	21	2.8	21	80	5	77	78	1	18	1	0.91
38051252--38051282	12	2.6	12	100	0	62	45	12	16	25	1.83
38053462--38053527	30	2.2	30	89	5	98	31	28	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38061509--38061548	11	3.9	10	87	9	55	10	7	2	80	1.00
38061511--38061550	20	2.0	20	90	0	62	12	7	5	75	1.18
38068349--38068402	24	2.2	25	78	15	60	11	22	3	62	1.43
38073643--38073704	28	2.2	29	86	11	85	11	14	6	67	1.40
38085518--38085551	18	1.9	18	88	5	52	8	35	2	52	1.47
38086588--38086660	31	2.6	27	78	16	83	9	13	6	69	1.34
38086641--38086679	13	3.0	13	88	0	60	12	7	2	76	1.09
38089527--38089579	23	2.4	22	76	20	56	9	18	1	69	1.25
38094608--38094670	29	2.2	28	84	13	85	66	6	15	11	1.42
38099913--38099969	23	2.4	25	80	14	66	63	3	22	10	1.42
38106453--38106514	10	5.9	10	74	10	52	33	32	3	30	1.74
38106453--38106515	21	3.0	21	88	2	90	33	33	3	30	1.74
38106817--38106851	13	2.8	13	91	4	54	74	5	5	14	1.19
38107849--38107887	15	2.4	15	87	12	51	66	2	20	10	1.33
38110656--38110696	15	2.7	16	74	11	50	7	26	0	65	1.18
38110854--38110892	15	2.4	15	87	12	51	10	20	2	66	1.33
38111743--38111810	29	2.4	30	85	14	99	10	13	2	73	1.20
38111762--38111814	13	3.8	13	74	13	52	7	15	1	75	1.11
38111855--38111886	12	2.7	12	90	0	55	12	3	6	78	1.06
38111855--38111898	12	3.4	13	84	6	54	13	4	6	75	1.17
38113774--38113838	20	3.3	19	73	16	51	38	16	21	23	1.93
38115674--38115729	21	2.7	21	72	5	51	8	17	1	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38115673--38115729	14	4.1	14	75	16	57	8	17	1	71	1.19
38115691--38115793	18	5.6	18	72	7	82	6	17	3	71	1.23
38115691--38115797	6	17.7	6	68	7	65	6	17	3	71	1.22
38116829--38116894	31	2.1	31	83	10	82	4	15	4	75	1.12
38116876--38116942	11	5.6	12	74	20	52	14	7	4	73	1.22
38127226--38127294	10	6.9	11	73	23	64	28	17	27	26	1.97
38127226--38127296	20	3.6	20	90	5	110	29	16	28	25	1.97
38129744--38129798	20	2.8	20	85	0	74	25	27	16	30	1.96
38129869--38129903	13	2.7	13	90	0	52	45	0	11	42	1.40
38130123--38130184	23	2.7	24	82	7	83	25	12	19	41	1.87
38132906--38132946	15	2.7	16	74	11	50	7	26	0	65	1.18
38133104--38133142	15	2.4	15	87	12	51	10	20	5	64	1.44
38134012--38134065	13	3.8	13	75	17	54	7	14	1	75	1.09
38133992--38134060	30	2.3	30	88	11	99	10	11	2	75	1.15
38134106--38134163	12	5.1	12	79	12	59	18	5	3	72	1.18
38138903--38138954	27	1.9	27	84	0	68	65	1	25	7	1.30
38143296--38143329	11	3.1	11	86	0	50	23	5	5	64	1.38
38145242--38145288	20	2.3	20	85	0	67	21	12	36	29	1.91
38146993--38147120	18	7.4	17	67	22	61	17	27	2	53	1.56
38146956--38147060	47	2.2	47	86	8	142	15	24	0	59	1.42
38147416--38147454	20	1.9	21	89	5	62	23	28	12	35	1.91
38147844--38147869	13	2.0	13	100	0	52	46	0	7	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38151202--38151254	19	2.8	19	83	11	56	3	13	5	77	1.09
38151348--38151373	13	2.0	13	100	0	52	30	7	0	61	1.24
38154226--38154272	20	2.3	20	85	0	67	21	12	36	29	1.91
38155610--38155678	10	6.9	11	73	23	64	28	17	27	26	1.97
38155610--38155680	20	3.6	20	90	5	110	29	16	28	25	1.97
38161429--38161545	55	2.1	55	82	4	148	23	25	16	34	1.95
38162828--38162890	21	3.0	21	88	2	81	33	31	4	30	1.78
38163235--38163299	23	2.9	22	90	6	103	44	20	12	23	1.84
38163514--38163554	13	3.2	13	86	3	57	46	12	0	41	1.41
38166578--38166629	23	2.3	22	75	21	54	9	23	1	65	1.32
38168776--38168846	20	3.6	20	86	5	101	30	16	26	25	1.97
38168776--38168846	10	7.2	10	70	24	53	30	16	26	25	1.97
38170241--38170298	28	2.0	29	90	3	91	15	8	3	72	1.23
38172171--38172241	20	3.6	20	86	5	101	30	16	26	25	1.97
38172171--38172241	10	7.2	10	70	24	53	30	16	26	25	1.97
38172160--38172246	40	2.2	39	76	13	88	34	17	24	24	1.96
38176832--38176894	21	3.0	21	88	2	90	30	3	33	33	1.74
38184144--38184195	27	1.9	27	84	0	68	65	1	25	7	1.30
38189532--38189594	21	3.0	21	85	2	72	33	33	4	28	1.78
38189893--38189944	13	4.0	12	87	12	68	71	1	11	15	1.23
38189893--38189944	25	2.0	25	88	7	77	71	1	11	15	1.23
38190583--38190636	20	2.7	20	82	0	63	24	20	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38190583--38190656	30	2.5	30	86	8	98	21	20	18	39	1.93
38190583--38190647	20	3.2	20	71	16	53	23	21	16	38	1.93
38192241--38192268	10	2.8	10	100	0	56	85	7	0	7	0.73
38194532--38194628	30	3.2	29	71	8	88	28	16	26	27	1.97
38198993--38199023	12	2.6	12	100	0	62	25	16	12	45	1.83
38199084--38199133	6	8.2	6	81	16	50	2	20	2	76	0.99
38199073--38199143	37	1.9	37	86	11	101	2	18	2	76	1.04
38199069--38199129	16	3.8	16	77	14	63	3	19	1	75	1.03
38200054--38200106	12	4.3	12	80	4	70	15	5	3	75	1.13
38200054--38200106	25	2.1	25	89	0	79	15	5	3	75	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230