genome.fa.s19.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  150  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44263169--44263766	47	12.6	47	91	3	844	28	29	8	33	1.87
44263169--44263766	96	6.3	96	89	4	847	28	29	8	33	1.87
44265030--44265207	85	2.1	85	98	0	347	26	27	8	37	1.85
44267735--44267968	113	2.1	113	94	1	407	46	17	9	26	1.78
44271418--44272394	47	20.6	47	92	2	1476	29	28	8	33	1.87
44272066--44272187	22	5.3	22	63	21	61	26	28	11	33	1.91
44272041--44272119	25	3.3	25	67	16	76	32	27	5	34	1.79
44275353--44275403	25	2.0	25	92	0	84	29	13	31	25	1.94
44278192--44278361	40	4.3	40	87	3	227	26	27	20	25	1.99
44278190--44278414	40	5.6	37	81	9	146	27	27	20	25	1.99
44278196--44278414	80	2.7	79	81	4	217	26	27	20	25	1.99
44278346--44278423	40	1.9	41	84	5	104	28	28	20	23	1.99
44280119--44280295	27	6.5	27	80	3	167	26	15	29	28	1.96
44280119--44280274	82	1.9	81	85	3	215	26	16	29	27	1.96
44288080--44288256	27	6.5	27	79	3	158	25	16	29	28	1.97
44288080--44288235	82	1.9	81	82	3	197	25	17	29	27	1.97
44288076--44288256	82	2.2	81	79	2	193	25	17	28	28	1.97
44305231--44305264	16	2.1	16	88	0	50	38	2	20	38	1.68
44310896--44310929	18	1.9	18	94	5	61	11	32	44	11	1.77
44314919--44314961	11	3.9	11	81	0	50	79	2	11	6	1.02
44314917--44314962	22	2.1	22	87	0	65	76	2	15	6	1.09
44315350--44315652	42	7.3	42	86	4	389	35	24	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44316055--44316131	7	10.4	8	78	16	51	0	12	5	81	0.84
44316056--44316140	20	4.3	19	75	21	68	0	11	4	83	0.79
44316070--44316139	14	4.8	14	80	16	63	0	10	5	84	0.78
44319926--44319977	19	2.7	18	77	11	59	42	11	3	42	1.59
44320314--44320354	3	13.7	3	100	0	82	0	0	31	68	0.90
44320454--44320496	22	1.9	23	85	4	61	60	2	4	32	1.30
44328142--44328252	32	3.7	30	73	16	95	52	2	3	41	1.33
44328182--44328227	19	2.2	21	85	11	60	54	2	0	43	1.12
44328144--44328270	58	2.2	58	88	2	184	51	3	3	41	1.33
44328558--44328600	20	2.2	20	91	4	70	9	16	25	48	1.75
44331695--44331787	46	2.0	46	89	0	141	22	5	11	60	1.52
44333207--44333301	46	2.1	46	84	4	120	25	6	8	60	1.50
44347602--44347650	16	3.1	16	75	18	50	57	0	2	40	1.10
44347961--44348013	24	2.2	24	83	6	63	37	7	11	43	1.69
44351415--44351499	43	2.0	43	83	0	107	25	12	25	35	1.92
44351822--44351875	19	2.8	19	88	0	90	37	11	16	35	1.84
44351822--44351898	19	3.7	22	76	13	67	36	9	16	37	1.81
44357759--44358020	39	6.6	39	87	5	320	25	22	27	24	2.00
44365765--44366026	39	6.6	39	87	5	320	25	22	27	24	2.00
44368423--44368474	24	2.2	24	89	0	77	38	1	5	53	1.36
44368440--44368486	24	2.0	24	87	8	69	40	4	10	44	1.59
44368683--44368732	24	2.1	24	92	0	82	50	6	4	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44368694--44368736	12	3.6	12	75	12	52	51	2	4	41	1.35
44369110--44369168	27	2.2	27	84	6	75	42	1	1	54	1.20
44369375--44369405	15	2.1	15	93	0	53	58	6	0	35	1.24
44369540--44369580	21	1.9	21	90	5	64	39	4	9	46	1.58
44372775--44373119	129	2.7	129	82	2	406	38	12	16	31	1.86
44374593--44374629	18	2.1	18	89	0	56	29	10	10	48	1.72
44381349--44381470	23	5.3	23	82	3	156	22	18	25	33	1.97
44381349--44381470	46	2.7	46	89	0	181	22	18	25	33	1.97
44385125--44385184	30	2.0	30	100	0	120	30	43	0	26	1.55
44400217--44400285	20	3.3	20	72	21	61	24	1	4	69	1.15
44407923--44407957	8	4.2	8	85	7	52	45	2	0	51	1.16
44409136--44409812	114	5.9	114	87	3	905	25	22	23	29	1.99
44409136--44409800	231	2.9	228	87	3	924	25	22	23	28	1.99
44410375--44410449	14	5.1	15	76	10	57	29	1	30	38	1.66
44410412--44410453	16	2.7	16	78	14	52	28	0	28	42	1.56
44410385--44410472	45	1.9	46	81	6	108	25	1	35	38	1.63
44410572--44410608	7	5.3	7	93	0	65	16	0	56	27	1.40
44410568--44410608	14	2.9	14	92	0	73	19	0	51	29	1.47
44410491--44410723	109	2.1	108	84	5	301	24	0	32	42	1.59
44410589--44410852	90	3.0	89	89	2	395	28	0	27	43	1.60
44411277--44411442	84	2.0	84	85	2	226	29	16	21	31	1.96
44412962--44412990	12	2.4	12	100	0	58	48	10	0	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44412986--44413329	9	39.8	9	65	20	130	47	18	2	31	1.62
44412986--44413337	25	14.0	25	66	21	96	47	18	2	31	1.61
44413012--44413136	34	3.7	34	68	16	98	46	19	2	32	1.63
44413052--44413325	41	6.8	41	71	17	114	46	18	2	32	1.62
44413110--44413325	16	13.1	16	67	21	108	48	18	1	31	1.59
44413121--44413207	44	2.0	44	100	0	174	50	16	1	32	1.52
44413262--44413340	25	3.2	24	82	13	97	45	18	1	34	1.58
44413521--44413584	25	2.5	26	89	2	103	43	15	1	39	1.56
44415269--44415494	43	5.3	43	84	3	276	29	18	27	24	1.98
44418479--44418528	26	1.9	26	87	0	73	54	4	6	36	1.44
44418479--44418528	13	3.8	13	78	0	55	54	4	6	36	1.44
44425366--44425399	17	1.9	18	88	5	52	55	20	2	20	1.56
44427442--44427543	44	2.4	42	82	8	118	28	19	21	30	1.98
44427588--44427694	42	2.5	44	83	8	130	28	24	19	27	1.99
44427273--44427922	223	2.9	225	81	3	645	29	20	18	31	1.96
44427716--44428101	184	2.1	179	87	3	540	30	19	16	32	1.95
44427716--44428017	92	3.3	91	70	9	270	31	19	16	32	1.94
44427487--44428324	407	2.1	402	87	1	1192	29	20	16	32	1.95
44428032--44428144	44	2.6	43	82	6	131	29	19	20	30	1.97
44427894--44428598	223	3.2	223	87	1	1000	30	20	17	32	1.95
44429821--44429947	45	2.7	45	82	4	155	13	24	21	40	1.89
44430909--44430961	11	4.8	11	77	9	54	7	20	0	71	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44435768--44435801	17	1.9	18	88	5	52	55	20	2	20	1.56
44436277--44436316	21	1.9	21	84	0	53	62	2	2	32	1.22
44438143--44438193	10	4.3	12	78	16	54	5	15	1	76	1.07
44445980--44446009	15	1.9	16	93	6	53	73	0	3	23	0.98
44452041--44452097	28	2.0	28	100	0	114	24	17	24	33	1.96
44457506--44457593	27	3.3	27	81	9	108	18	19	18	44	1.87
44463516--44463559	22	2.0	23	86	4	63	43	13	6	36	1.71
44466490--44466650	72	2.2	72	85	3	218	28	19	22	29	1.98
44466544--44466760	114	1.9	114	88	0	328	26	17	26	28	1.98
44466664--44466823	73	2.2	73	87	0	230	27	19	25	28	1.99
44466488--44467274	187	4.2	187	85	4	963	28	19	24	26	1.99
44466851--44467022	73	2.4	73	87	0	245	29	18	26	26	1.98
44466921--44467142	114	1.9	114	91	1	365	27	19	27	25	1.99
44467059--44467226	84	2.0	84	89	0	255	28	21	24	25	1.99
44467579--44467640	21	2.9	21	78	2	70	19	0	37	43	1.51
44467652--44467693	21	2.0	20	95	4	75	11	0	35	52	1.38
44467958--44468030	21	3.5	20	83	9	83	26	0	39	34	1.56
44471947--44472193	43	5.8	43	75	8	119	23	17	32	26	1.97
44471974--44472206	43	5.5	44	77	5	176	24	18	30	27	1.98
44480125--44480172	16	3.1	15	80	16	53	77	0	4	18	0.93
44482996--44483092	41	2.4	41	89	0	140	31	21	18	27	1.97
44483304--44483490	65	3.0	61	72	14	148	40	16	7	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44491445--44491541	41	2.4	41	89	0	140	34	21	16	27	1.95
44498707--44498737	15	2.1	15	93	0	53	41	12	6	38	1.69
44498746--44498809	27	2.4	27	81	0	74	23	23	14	39	1.91
44498976--44499086	26	4.2	26	79	6	91	32	23	14	29	1.94
44498976--44499218	53	4.6	53	76	5	206	32	22	13	32	1.92
44504846--44504900	27	2.0	27	89	0	83	30	18	16	34	1.93
44514643--44514683	21	2.0	21	100	0	82	46	19	4	29	1.71
44519042--44519103	24	2.7	22	74	13	63	67	1	6	24	1.23
44522016--44522157	43	3.3	43	86	1	187	30	23	18	27	1.97
44523690--44523748	30	2.0	30	86	0	82	55	6	13	23	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230