genome.fa.s19.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  156  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46108609--46108968	40	9.1	40	93	0	580	24	21	28	25	1.99
46112531--46113222	47	14.6	47	92	1	1096	33	8	29	29	1.87
46112531--46113222	96	7.3	94	91	2	1096	33	8	29	29	1.87
46112531--46113222	143	4.9	143	95	1	1185	33	8	29	29	1.87
46136945--46137132	40	4.7	40	95	0	322	21	26	20	30	1.98
46141626--46141946	40	8.1	40	90	0	482	24	21	28	26	1.99
46144561--46145341	47	16.6	47	91	4	1089	33	8	28	28	1.87
46144891--46145083	49	4.2	42	89	8	115	34	8	27	29	1.86
46145192--46145313	22	5.3	22	62	21	61	33	11	29	25	1.91
46147770--46147844	38	2.0	38	86	5	107	30	18	26	24	1.98
46147898--46148178	40	7.1	40	90	0	420	24	21	28	25	1.99
46149434--46149611	84	2.1	85	97	1	340	37	8	28	26	1.85
46150875--46151549	47	14.6	47	91	5	952	33	8	29	29	1.87
46151213--46151288	22	3.3	22	66	16	64	32	10	30	26	1.90
46151308--46151382	22	3.3	22	67	17	62	32	10	29	28	1.90
46153975--46154049	38	2.0	38	86	5	107	30	18	26	24	1.98
46154103--46154383	40	7.1	40	90	0	402	24	21	28	25	1.99
46155637--46155815	85	2.1	85	97	0	340	37	7	27	26	1.84
46157083--46158010	47	19.6	47	93	2	1319	32	8	29	28	1.88
46157720--46157794	22	3.3	22	65	17	62	32	12	29	26	1.92
46157861--46157982	22	5.3	22	62	21	61	33	11	29	25	1.91
46167545--46167576	11	2.9	11	100	0	64	28	28	9	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46169260--46169340	34	2.5	33	86	6	112	11	30	0	58	1.33
46172500--46172537	20	1.9	20	94	0	67	50	0	23	26	1.50
46174105--46174161	28	2.0	28	86	0	78	19	31	15	33	1.93
46174143--46174231	33	2.7	33	81	6	110	21	23	13	41	1.88
46174350--46174470	51	2.4	51	84	0	143	21	28	13	37	1.91
46183579--46183952	33	11.3	33	81	0	352	47	16	21	14	1.82
46187888--46187933	24	1.9	24	82	8	58	43	2	2	52	1.25
46189197--46189259	8	7.9	8	75	15	51	22	4	1	71	1.13
46204805--46204855	21	2.5	21	90	3	77	31	9	29	29	1.89
46205071--46205110	21	1.9	21	89	0	62	17	17	5	60	1.54
46219292--46219357	30	2.2	30	94	0	114	24	27	3	45	1.68
46222230--46222383	43	3.6	42	85	3	202	31	24	18	25	1.97
46228356--46228546	61	3.2	61	72	11	221	43	1	4	50	1.30
46228296--46228581	120	2.4	120	96	2	522	43	0	4	51	1.26
46228724--46228820	45	2.2	45	87	5	135	35	28	5	30	1.79
46228800--46228832	16	2.1	16	100	0	66	21	36	6	36	1.78
46230632--46230872	7	33.9	7	70	12	80	43	33	0	22	1.57
46231185--46231277	40	2.3	40	84	0	114	29	19	18	33	1.95
46231359--46231445	40	2.2	40	82	0	102	28	21	20	28	1.98
46231211--46231600	155	2.5	155	84	0	528	30	22	18	29	1.97
46231492--46231680	40	4.7	40	84	1	236	30	22	20	26	1.98
46238993--46239680	365	1.9	368	89	1	1087	36	11	16	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46243445--46243484	13	3.1	13	82	10	55	15	17	15	52	1.75
46244368--46244413	19	2.5	20	75	13	53	50	4	10	34	1.57
46248960--46249086	49	2.6	48	92	4	186	32	7	28	31	1.86
46248981--46249086	49	2.2	49	100	0	212	33	7	27	32	1.85
46249064--46249109	23	2.0	23	100	0	92	39	0	21	39	1.54
46249015--46249158	72	2.0	72	100	0	288	34	5	26	33	1.80
46248981--46249334	121	2.9	123	89	6	497	33	8	28	29	1.87
46249087--46249222	49	2.8	49	95	2	249	33	8	27	30	1.87
46249192--46249253	31	2.0	31	100	0	124	32	12	25	29	1.93
46249223--46249336	47	2.4	47	85	0	156	32	8	31	27	1.87
46249150--46249302	78	2.0	78	93	0	261	32	11	28	28	1.91
46255594--46255687	28	3.4	28	74	9	79	50	15	3	30	1.60
46269355--46269471	59	1.9	59	84	8	155	42	3	3	50	1.36
46271627--46271742	43	2.7	43	86	2	153	40	23	13	22	1.90
46278859--46279033	88	2.0	88	98	0	341	24	15	20	40	1.90
46287113--46287154	19	2.2	19	86	0	57	19	33	16	30	1.94
46288771--46288799	12	2.3	13	94	5	51	0	24	0	75	0.80
46289753--46289802	23	2.2	23	85	7	66	64	12	2	22	1.37
46291768--46291820	25	2.1	25	92	0	88	28	1	11	58	1.43
46292040--46292066	4	6.8	4	100	0	54	51	22	0	25	1.48
46299398--46299426	5	5.8	5	100	0	58	62	0	0	37	0.96
46301229--46301282	20	2.7	20	91	0	81	55	1	20	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46303748--46303789	20	2.1	20	100	0	84	38	23	19	19	1.93
46309749--46309810	30	2.1	30	87	6	90	48	11	8	32	1.68
46312687--46312728	21	2.0	20	82	13	50	50	9	7	33	1.62
46313373--46313417	22	2.0	22	83	8	56	53	0	4	42	1.21
46316463--46316958	27	18.4	27	83	2	539	19	16	22	41	1.90
46327191--46327846	47	13.8	47	96	1	1132	32	8	29	29	1.87
46327965--46328043	37	2.1	37	88	0	113	24	17	31	26	1.97
46334486--46334544	26	2.2	27	81	3	66	71	8	5	15	1.28
46336995--46337119	41	3.0	41	86	5	171	23	30	12	33	1.92
46337049--46337116	21	3.3	21	68	12	59	26	32	10	30	1.90
46338427--46338563	40	3.4	40	79	9	145	21	20	26	32	1.98
46343054--46343082	12	2.5	12	94	5	51	27	0	17	55	1.42
46344392--46344427	14	2.5	15	90	4	56	66	0	8	25	1.19
46344395--46344427	15	2.2	16	84	15	52	63	0	9	27	1.24
46347094--46347214	54	2.2	53	79	5	127	23	25	31	19	1.98
46348634--46348812	85	2.1	85	96	0	331	37	8	27	25	1.86
46350949--46351454	47	10.6	47	92	3	816	33	8	28	29	1.86
46350949--46351454	96	5.3	96	95	0	851	33	8	28	29	1.86
46350949--46351454	143	3.5	141	92	3	816	33	8	28	29	1.86
46357793--46357839	20	2.3	20	100	0	94	25	27	19	27	1.99
46358742--46358870	33	4.2	28	71	18	78	31	20	21	25	1.98
46358746--46358840	33	2.9	33	93	0	154	35	20	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46359024--46359083	27	2.2	28	85	11	81	38	21	21	18	1.94
46359268--46359510	26	9.3	26	85	3	319	24	16	20	38	1.93
46362434--46362480	24	2.0	24	82	0	58	44	17	10	27	1.81
46366642--46366701	24	2.5	24	83	2	75	20	0	25	55	1.44
46384339--46384377	19	2.1	19	95	0	69	38	10	17	33	1.84
46389246--46389352	43	2.5	43	83	6	119	30	26	17	25	1.97
46392689--46392913	40	5.6	40	82	3	263	24	23	25	26	2.00
46392689--46392887	83	2.4	83	90	2	314	24	23	26	26	2.00
46399938--46400168	40	5.7	40	84	3	284	23	22	27	27	1.99
46399938--46400168	83	2.9	82	87	4	337	23	22	27	27	1.99
46420625--46420796	46	3.7	48	79	11	164	27	19	29	23	1.98
46422000--46422038	21	1.9	21	89	5	62	12	35	30	20	1.90
46450310--46450372	27	2.3	27	83	0	81	38	31	14	15	1.88
46453264--46453302	17	2.3	17	81	0	51	28	25	17	28	1.98
46457219--46457271	26	2.0	26	82	7	63	22	16	20	39	1.92
46458147--46458246	24	4.2	24	86	6	132	20	38	6	36	1.77
46464773--46464825	26	2.0	26	85	7	72	20	16	22	39	1.92
46466072--46466172	24	4.2	24	85	7	125	20	37	4	36	1.75
46472248--46472345	27	3.5	28	90	2	135	26	13	28	31	1.94
46472276--46472358	27	3.0	27	87	5	96	30	12	25	32	1.92
46472248--46472359	28	4.0	27	83	6	98	28	12	25	33	1.92
46477104--46477160	28	2.0	28	100	0	114	17	29	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46482782--46482940	47	3.4	47	85	0	228	31	8	30	29	1.86
46489745--46489898	38	3.9	39	83	6	116	31	27	21	19	1.97
46489745--46489880	38	3.5	37	87	6	166	32	27	22	18	1.97
46499840--46500101	40	6.6	40	88	3	323	26	27	20	24	1.99
46507797--46508018	40	5.6	40	85	3	243	26	27	20	24	1.99
46513299--46513396	27	3.5	28	87	2	126	26	12	28	32	1.92
46513327--46513409	27	3.0	27	87	5	96	30	10	26	32	1.90
46515511--46515639	46	2.8	46	89	0	186	29	27	21	20	1.98
46518029--46518078	15	3.4	15	81	13	59	62	12	16	10	1.55
46521018--46521146	46	2.8	46	87	0	186	29	27	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230