genome.fa.s19.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  152  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44796542--44796589	19	2.3	22	86	13	66	39	2	4	54	1.32
44801764--44801805	16	2.5	17	80	3	50	26	40	0	33	1.56
44803655--44803688	17	1.9	18	88	5	52	50	0	0	50	1.00
44803902--44803985	21	4.1	21	86	6	109	20	1	34	44	1.59
44803904--44803994	14	6.6	14	71	12	64	19	2	35	42	1.64
44803912--44803984	7	10.7	7	71	11	53	17	1	35	45	1.58
44804471--44804582	22	4.9	22	70	13	57	59	0	2	36	1.17
44807806--44807949	72	2.0	72	94	0	252	36	9	16	36	1.82
44812292--44812469	27	6.6	27	80	3	160	28	29	15	26	1.96
44812313--44812468	82	1.9	81	85	3	215	27	29	16	26	1.96
44814229--44814286	28	2.1	28	93	0	98	34	15	15	34	1.89
44817281--44817424	72	2.0	72	94	0	252	36	9	16	36	1.82
44821773--44821950	27	6.6	27	80	3	160	28	29	15	26	1.96
44821794--44821949	82	1.9	81	85	3	215	27	29	16	26	1.96
44823710--44823767	28	2.1	28	93	0	98	34	15	15	34	1.89
44826983--44827024	22	1.9	22	85	0	57	54	4	23	16	1.61
44828361--44828430	26	2.6	27	91	6	108	42	8	1	47	1.43
44828486--44828552	27	2.5	26	88	11	100	20	26	31	20	1.98
44831125--44831267	4	35.0	4	75	18	102	0	29	0	70	0.87
44831093--44831258	18	9.0	18	69	24	89	0	30	0	69	0.88
44831103--44831266	82	2.0	79	85	8	215	0	29	0	70	0.88
44831126--44831268	48	3.0	51	81	11	146	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44831125--44831259	18	7.5	17	74	17	94	0	29	0	70	0.88
44831095--44831267	87	2.0	87	83	8	223	0	30	0	69	0.88
44831223--44831278	26	2.2	25	81	12	71	0	39	0	60	0.97
44831308--44831375	27	2.5	27	92	0	109	16	26	29	27	1.97
44831443--44831513	27	2.6	28	93	4	119	49	0	7	43	1.29
44831498--44831536	19	2.1	19	85	9	53	28	0	2	69	1.02
44841186--44841301	58	2.0	58	91	0	187	18	15	21	44	1.86
44849696--44849745	11	4.2	12	75	12	50	18	6	2	74	1.12
44849698--44849739	22	1.9	22	90	0	66	14	7	2	76	1.10
44849694--44849762	35	2.0	35	85	0	93	14	11	1	72	1.19
44852304--44852426	41	3.0	41	85	5	158	26	26	17	29	1.98
44852791--44853005	77	2.8	75	77	4	216	40	17	3	37	1.68
44855596--44855699	51	2.0	51	94	0	181	25	15	23	36	1.93
44861958--44862118	83	1.9	83	83	10	202	44	14	9	32	1.77
44862763--44862923	87	1.9	87	88	2	243	32	8	16	43	1.77
44862763--44862994	88	2.6	88	82	6	256	32	7	17	42	1.78
44865443--44865497	21	2.7	21	83	5	69	21	30	29	18	1.97
44879146--44879191	23	1.9	25	91	8	78	19	15	10	54	1.70
44880894--44880924	7	4.4	7	100	0	62	45	0	25	29	1.54
44887466--44887559	25	3.8	25	77	13	86	21	26	20	31	1.98
44887478--44887572	49	2.0	50	83	10	126	21	27	17	33	1.96
44890298--44890418	54	2.2	54	95	0	215	32	11	10	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44890582--44890610	2	14.5	2	100	0	58	51	0	48	0	1.00
44897233--44897295	20	3.2	20	68	8	56	33	17	28	20	1.95
44901522--44901600	37	2.1	37	85	0	104	26	31	18	22	1.97
44901719--44901961	47	5.1	47	90	4	369	27	30	9	32	1.89
44901719--44901961	98	2.5	94	91	2	369	27	30	9	32	1.89
44909117--44909252	20	6.8	19	72	5	74	36	20	30	13	1.91
44909105--44909265	40	4.0	40	85	0	223	36	19	29	14	1.91
44912329--44912375	16	2.9	16	96	0	85	19	8	25	46	1.77
44918091--44918199	40	2.8	40	85	1	148	15	19	23	41	1.90
44918899--44919108	103	2.0	103	97	0	393	37	4	18	39	1.72
44922047--44922107	25	2.4	25	97	0	113	40	13	19	26	1.88
44941889--44941966	34	2.3	34	88	0	111	34	11	10	43	1.75
44942141--44942221	23	3.6	23	89	1	119	33	22	25	18	1.97
44943858--44943960	27	3.8	27	87	2	136	29	27	14	29	1.95
44947041--44947066	12	2.2	12	100	0	52	23	30	7	38	1.83
44953814--44953904	27	3.4	28	80	4	98	30	20	23	25	1.98
44954007--44954061	26	2.1	26	89	0	83	38	21	16	23	1.93
44954258--44954343	27	3.2	26	85	8	111	17	13	20	47	1.82
44961565--44961677	27	4.2	27	85	4	79	21	13	23	42	1.87
44961577--44961681	27	3.9	27	91	0	156	19	13	22	44	1.85
44973033--44973103	7	10.4	7	77	17	51	36	0	49	14	1.43
44973061--44973090	14	2.1	14	100	0	60	30	0	56	13	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44979988--44980032	23	2.0	23	86	4	65	42	2	13	42	1.56
44980834--44980903	28	2.5	28	88	0	95	25	20	14	40	1.90
44983327--44983461	61	2.2	61	85	2	173	32	17	24	25	1.96
44983351--44983489	61	2.3	61	81	5	147	32	16	26	24	1.96
45003603--45003681	26	2.9	27	80	12	99	21	13	5	59	1.54
45005501--45005541	3	13.7	3	100	0	82	34	0	0	65	0.93
45010074--45010124	23	2.2	23	89	0	75	27	11	21	39	1.88
45017179--45017225	23	2.0	23	83	0	58	38	12	17	31	1.87
45020231--45020582	98	3.6	97	87	1	434	28	20	20	29	1.98
45020474--45020991	143	3.6	143	86	0	667	30	18	22	28	1.98
45023748--45024072	86	3.8	86	80	4	325	32	20	17	29	1.95
45025454--45025514	22	2.5	26	82	17	78	34	14	26	24	1.94
45027404--45027453	25	2.0	26	96	4	93	54	8	8	30	1.58
45031721--45032018	145	2.0	146	92	0	499	38	4	8	48	1.53
45035978--45036011	16	2.1	17	88	5	52	32	17	8	41	1.80
45039941--45040006	29	2.3	28	82	12	80	57	10	7	24	1.58
45044797--45044890	30	3.1	30	90	0	152	24	32	15	26	1.96
45044865--45044952	42	2.1	42	86	0	122	20	29	23	26	1.99
45047608--45047678	37	1.9	37	85	0	97	28	16	38	16	1.91
45049421--45049464	18	2.4	18	92	0	70	40	40	2	15	1.60
45049571--45049637	9	7.4	9	91	0	89	23	7	25	43	1.80
45049571--45049638	27	2.5	27	90	0	109	23	7	25	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45050193--45050279	21	3.9	22	72	15	72	50	3	1	44	1.26
45050379--45050426	24	2.0	24	83	0	60	41	0	0	58	0.98
45050415--45050463	25	1.9	26	83	4	64	44	4	0	51	1.20
45070086--45070407	44	7.3	44	64	9	163	30	21	24	23	1.99
45070083--45070463	132	2.9	132	95	0	681	30	21	24	23	1.99
45071113--45071145	14	2.4	14	85	15	50	84	6	9	0	0.76
45071114--45071149	12	2.8	13	91	8	56	83	5	11	0	0.80
45075296--45075383	25	3.6	25	78	4	81	23	23	20	31	1.98
45075533--45075592	31	1.9	31	83	6	77	40	1	18	40	1.60
45090179--45090362	40	4.6	39	77	9	142	25	20	27	27	1.99
45098240--45098424	40	4.6	39	83	5	203	24	22	28	25	1.99
45098240--45098422	79	2.3	81	83	7	223	24	22	27	25	2.00
45098293--45098457	79	2.1	79	82	6	192	26	20	27	26	1.99
45105576--45105627	21	2.5	21	90	0	86	23	7	38	30	1.83
45105890--45105941	22	2.3	22	78	15	54	50	3	1	44	1.31
45113847--45113880	9	3.8	9	88	0	50	47	14	8	29	1.75
45114184--45114236	16	3.1	15	78	21	52	22	30	0	47	1.52
45114178--45114237	19	3.4	18	78	19	63	21	28	0	50	1.49
45114206--45114245	20	2.0	20	85	9	55	22	30	0	47	1.52
45114739--45114795	5	11.2	5	83	10	71	22	24	15	36	1.94
45119280--45119323	15	2.9	15	77	12	54	79	0	4	15	0.89
45120039--45120561	44	11.2	44	64	22	142	27	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45120000--45120660	142	4.7	142	94	0	1162	27	19	19	33	1.96
45120211--45120392	98	1.9	98	81	6	226	28	19	19	32	1.96
45120485--45120577	44	2.1	44	86	2	125	25	21	22	30	1.99
45130673--45130733	30	2.0	30	90	0	95	19	8	34	37	1.82
45133292--45133328	18	2.1	18	89	0	56	51	13	8	27	1.69
45148246--45148429	78	2.3	81	85	6	243	23	22	27	25	2.00
45148246--45148429	40	4.7	40	83	8	225	23	22	27	25	2.00
45148299--45148462	78	2.1	77	85	5	213	25	21	27	25	1.99
45149963--45150475	100	5.1	100	91	0	760	31	20	23	24	1.98
45149963--45150403	50	8.8	49	69	4	274	31	20	23	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230