genome.fa.s19.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  57  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15462363--15462403	19	2.2	19	86	0	55	65	12	4	17	1.42
15476290--15476423	41	3.3	40	81	11	164	27	20	27	23	1.99
15479077--15479259	101	1.8	102	88	5	282	25	19	26	29	1.98
15479080--15479257	51	3.5	49	79	9	191	25	19	25	29	1.98
15479263--15479361	46	2.2	43	84	12	128	26	18	23	32	1.97
15489124--15489257	41	3.3	40	81	11	164	27	20	27	23	1.99
15491911--15492093	101	1.8	102	88	5	282	25	19	26	29	1.98
15491914--15492091	51	3.5	49	79	9	191	25	19	25	29	1.98
15492097--15492195	46	2.2	43	84	12	128	26	18	23	32	1.97
15506321--15506542	116	1.9	115	81	2	266	31	21	20	26	1.98
15507449--15507478	5	6.0	5	100	0	60	40	0	0	60	0.97
15509792--15509944	40	3.8	40	87	1	191	35	18	14	31	1.91
15516152--15516219	24	2.9	24	78	10	77	16	38	5	39	1.73
15517626--15517667	10	4.5	10	82	17	63	54	0	0	45	0.99
15520026--15520094	25	2.8	25	82	4	79	15	7	7	69	1.34
15520290--15520332	20	2.0	20	86	8	59	65	4	0	30	1.13
15526819--15526870	16	3.2	16	80	0	50	51	5	5	36	1.50
15527574--15527615	18	2.3	19	84	12	52	35	4	2	57	1.33
15527575--15527646	28	2.5	28	82	8	92	38	4	1	55	1.28
15527592--15527638	18	2.5	19	80	13	53	38	4	2	55	1.31
15542804--15542859	26	2.1	26	83	9	69	0	30	3	66	1.09
15542913--15542945	5	7.0	5	86	13	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15547707--15547769	33	1.9	31	81	15	74	0	28	4	66	1.12
15556143--15556180	18	2.1	18	90	0	58	44	2	0	52	1.14
15583655--15583707	23	2.4	22	76	20	56	9	18	1	69	1.25
15588178--15588237	30	2.0	30	83	3	75	40	0	36	23	1.55
15588531--15588561	9	3.4	9	90	0	53	38	22	12	25	1.90
15588725--15589096	187	2.0	187	97	0	699	14	22	12	50	1.76
15590002--15590065	33	2.0	32	90	3	101	39	25	9	26	1.86
15590282--15590375	41	2.3	41	90	7	147	27	24	20	27	1.99
15590311--15590388	41	1.9	41	94	0	138	29	23	19	28	1.98
15591463--15591487	13	1.9	13	100	0	50	68	24	0	8	1.16
15596543--15596606	33	2.0	32	90	3	101	39	25	9	26	1.86
15596821--15597017	41	4.8	41	92	5	317	27	22	20	28	1.99
15597205--15597229	2	12.5	2	100	0	50	52	0	0	48	1.00
15598088--15598112	13	1.9	13	100	0	50	68	24	0	8	1.16
15601080--15601117	18	2.1	18	100	0	76	60	0	0	39	0.97
15615345--15615391	22	2.2	22	84	3	60	25	0	42	31	1.55
15630535--15630586	20	2.6	20	85	11	63	63	7	0	28	1.22
15630874--15630923	26	1.9	26	83	0	64	26	22	10	42	1.84
15637335--15637471	49	2.8	49	77	6	152	22	24	21	31	1.98
15643114--15643150	3	12.3	3	100	0	74	35	0	0	64	0.94
15646525--15647006	69	7.0	69	80	3	486	20	19	23	36	1.95
15646525--15647006	138	3.5	138	82	1	536	20	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15646530--15647006	207	2.3	207	83	1	598	20	19	23	37	1.95
15650616--15650641	3	8.7	3	100	0	52	0	65	0	34	0.93
15652239--15652281	22	2.0	21	86	13	61	39	39	4	16	1.69
15655405--15655681	46	6.0	46	93	0	428	37	8	25	28	1.86
15658496--15658526	16	1.9	16	93	0	53	77	0	16	6	0.97
15662210--15662261	24	2.2	24	82	0	59	51	11	3	32	1.56
15664173--15664224	24	2.2	24	89	0	77	55	9	1	32	1.43
15665074--15665118	19	2.3	19	88	3	63	55	6	6	31	1.52
15665152--15665345	96	2.0	96	94	0	343	37	26	12	23	1.90
15666911--15666980	24	2.9	24	76	0	77	34	38	5	21	1.77
15667983--15668012	14	2.1	14	100	0	60	43	13	0	43	1.43
15671399--15671434	5	7.4	5	87	6	56	77	0	2	19	0.88
15671403--15671433	14	2.2	14	94	0	53	77	0	3	19	0.90
15672285--15672501	115	1.9	115	85	1	301	27	25	22	24	2.00
15674769--15674879	43	2.6	42	79	1	114	28	16	24	30	1.96
15681026--15681086	31	1.9	32	83	9	81	34	9	0	55	1.33
15685535--15685571	15	2.4	15	90	4	56	56	0	5	37	1.22
15685495--15685576	25	3.2	24	74	16	76	56	0	3	40	1.17
15702545--15702652	37	2.9	37	77	18	111	41	2	3	51	1.34
15702604--15702661	31	1.9	29	82	6	71	39	3	5	51	1.41
15702695--15702735	20	2.0	21	85	4	57	51	2	0	46	1.14
15702844--15702905	31	2.0	31	90	0	97	46	4	9	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15705377--15705406	14	2.1	14	100	0	60	30	20	13	36	1.90
15705763--15705939	73	2.4	72	86	0	228	31	24	22	22	1.99
15706577--15706999	192	2.2	193	82	6	493	29	9	19	42	1.82
15707977--15708280	43	7.1	43	86	2	353	23	16	29	30	1.96
15707986--15708280	85	3.4	86	86	1	387	23	16	29	30	1.96
15708355--15708399	21	2.1	21	91	0	72	46	28	13	11	1.77
15709665--15709703	14	2.6	15	88	8	53	51	2	0	46	1.14
15709668--15709712	23	2.0	23	82	8	56	51	2	2	44	1.26
15723496--15723566	36	2.0	36	97	0	133	35	21	8	35	1.84
15730784--15731189	153	2.7	153	85	0	551	37	19	10	32	1.86
15730784--15731189	51	8.0	51	83	0	479	37	19	10	32	1.86
15742581--15742719	40	3.5	40	78	6	149	30	25	17	26	1.98
15742586--15742719	41	3.4	41	77	9	152	31	26	17	25	1.97
15747475--15747501	9	3.0	9	100	0	54	44	44	0	11	1.39
15747987--15748109	44	2.8	43	89	7	194	27	24	2	45	1.66
15764944--15765406	243	1.9	245	82	5	589	38	10	7	43	1.68
15765371--15765403	16	2.0	17	88	5	50	45	0	9	45	1.35
15766752--15766791	11	3.6	11	82	0	53	2	12	17	67	1.33
15776715--15776791	35	2.2	36	88	4	120	28	3	15	51	1.61
15778144--15778181	14	2.7	14	87	0	58	39	18	7	34	1.80
15779484--15779775	43	6.8	43	83	1	345	26	29	18	25	1.98
15779484--15779785	128	2.4	129	82	1	365	27	29	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15780313--15780392	36	2.2	36	95	0	142	47	15	12	25	1.80
15781953--15782030	39	2.0	39	97	0	147	32	24	5	38	1.77
15783993--15784082	7	12.7	7	69	2	54	33	42	1	23	1.62
15784023--15784088	28	2.4	28	87	5	89	33	40	0	25	1.56
15784072--15784193	61	2.0	63	88	3	185	47	20	0	31	1.56
15784251--15784283	14	2.3	15	94	5	59	36	33	0	30	1.58
15784636--15784679	20	2.3	19	80	7	52	63	4	6	25	1.38
15784679--15784918	114	2.2	106	82	10	281	26	22	22	28	1.99
15784836--15784992	65	2.4	65	88	5	221	26	22	23	27	1.99
15784901--15785265	113	3.3	112	82	6	392	27	22	23	27	1.99
15785189--15785306	42	2.9	41	86	7	166	26	27	21	24	1.99
15785189--15785306	41	2.9	41	88	5	166	26	27	21	24	1.99
15785274--15785412	66	2.1	65	88	5	201	24	22	23	30	1.99
15785338--15785765	113	3.9	113	83	6	499	27	22	22	26	1.99
15784794--15785701	437	2.1	436	97	0	1728	26	22	22	27	1.99
15785750--15785852	40	2.6	40	82	1	118	27	22	20	30	1.98
15785791--15785870	40	2.0	40	90	4	126	21	21	23	33	1.97
15798263--15798342	21	3.8	21	69	9	56	26	25	31	17	1.97
15801515--15801568	13	4.2	13	88	4	74	37	20	1	40	1.63
15801515--15801568	26	2.1	26	89	6	83	37	20	1	40	1.63
15801515--15801581	13	5.2	13	83	7	73	34	19	2	43	1.66
15804931--15804976	21	2.2	21	96	0	83	43	13	17	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15816819--15816932	44	2.6	44	83	4	149	29	18	21	30	1.97
15825005--15825057	24	2.2	24	84	15	74	35	9	24	30	1.87
15824749--15825090	140	2.4	141	83	7	385	36	10	21	30	1.88
15824887--15825269	199	1.9	198	82	7	481	37	10	21	31	1.87
15825086--15825395	141	2.2	141	85	2	399	34	11	21	31	1.89
15833582--15833629	17	2.8	17	74	0	51	64	8	2	25	1.32
15838713--15838766	25	2.2	25	86	0	72	40	12	14	31	1.84
15850087--15850112	12	2.2	12	100	0	52	15	23	0	61	1.33
15853325--15853412	45	2.0	45	95	0	158	26	15	22	35	1.94
15853489--15853561	37	1.9	37	84	13	96	42	1	23	32	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230