Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  126  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36636828--36636852
9
2.8
9
100
0
50
80
8
0
12
0.92
36642316--36642372
17
3.7
17
68
31
56
22
33
26
17
1.96
36642312--36642370
27
2.2
27
96
0
109
20
35
27
16
1.94
36651705--36651880
94
1.9
94
97
0
334
47
4
9
38
1.56
36668048--36668099
13
3.8
13
85
9
68
19
9
0
71
1.13
36668048--36668097
15
3.5
15
91
5
77
18
8
0
74
1.06
36668048--36668102
28
2.0
28
92
0
92
21
10
0
67
1.21
36668140--36668178
11
3.6
11
89
6
62
12
0
7
79
0.93
36670746--36670813
25
2.8
25
95
4
122
14
20
11
52
1.73
36670959--36671020
28
2.2
29
83
11
76
11
12
6
69
1.36
36678257--36678291
13
2.7
13
86
0
52
80
5
2
11
1.00
36678257--36678317
14
4.5
13
79
16
70
75
4
4
14
1.14
36678321--36678360
17
2.4
17
87
8
55
72
7
15
5
1.24
36679400--36679433
18
1.9
18
88
5
52
52
2
35
8
1.47
36684867--36684907
21
2.0
21
85
0
55
43
31
2
21
1.66
36687657--36687773
54
2.5
43
70
26
110
40
10
14
35
1.80
36687673--36687781
54
2.0
54
96
0
200
38
10
13
37
1.79
36688045--36688085
14
3.0
13
85
7
55
65
0
12
21
1.25
36688122--36688149
10
2.8
10
100
0
56
75
7
0
17
1.03
36697718--36697826
54
2.0
54
98
0
209
40
11
11
36
1.78
36701266--36701319
20
2.7
20
82
0
63
24
20
18
37
1.94
36701266--36701339
30
2.5
30
86
8
98
21
20
18
39
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36701266--36701330
20
3.2
20
71
16
53
23
21
16
38
1.93
36708425--36708486
17
3.6
18
78
12
76
58
3
22
16
1.52
36708425--36708499
33
2.2
33
90
6
116
56
4
25
14
1.56
36711760--36711801
22
1.9
22
95
0
75
30
7
33
28
1.84
36712586--36712645
31
2.0
30
83
9
77
28
31
15
25
1.95
36712924--36712982
30
2.0
30
83
6
75
30
13
25
30
1.94
36714662--36714699
20
1.9
19
89
5
58
28
15
31
23
1.96
36717644--36717708
20
3.3
19
73
16
51
38
16
21
23
1.93
36718974--36719007
18
1.9
18
88
5
52
8
35
2
52
1.47
36720029--36720097
29
2.4
27
81
9
75
13
14
5
66
1.42
36721760--36721824
20
3.3
19
73
16
51
38
16
21
23
1.93
36722666--36722887
111
2.0
111
94
0
390
22
20
21
35
1.96
36728978--36729052
20
3.8
20
78
5
82
26
20
26
26
1.99
36731763--36732010
122
2.0
122
99
0
487
43
17
15
24
1.87
36732047--36732171
55
2.3
55
91
4
200
29
24
12
32
1.93
36732210--36732243
10
3.4
10
92
8
52
55
20
0
23
1.43
36740628--36740688
10
6.1
10
74
12
54
32
13
24
29
1.93
36740629--36740689
20
3.0
20
83
9
79
32
13
26
27
1.93
36742709--36742771
33
1.9
33
84
12
85
12
25
6
55
1.60
36745237--36745297
10
6.1
10
74
12
54
32
13
24
29
1.93
36745238--36745298
20
3.0
20
83
9
79
32
13
26
27
1.93
36747088--36747150
21
3.0
21
88
2
90
30
3
33
33
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36750472--36750565
46
2.0
46
93
0
161
24
21
22
31
1.98
36750909--36750976
21
3.1
21
76
12
64
30
20
14
33
1.93
36752594--36752689
33
3.2
33
68
27
102
43
14
8
33
1.75
36758272--36758389
58
2.0
58
100
0
236
29
22
16
31
1.96
36777317--36777371
20
2.8
20
88
0
83
25
29
16
29
1.97
36780203--36780240
10
3.8
10
83
13
51
28
28
15
26
1.96
36781773--36781801
14
2.1
14
93
6
51
75
6
3
13
1.13
36782904--36782950
15
3.1
15
84
9
60
70
0
17
12
1.17
36783003--36783036
15
2.3
15
89
0
50
67
0
29
2
1.05
36787848--36787893
20
2.3
20
88
7
67
15
23
4
56
1.57
36794583--36794636
23
2.2
25
78
15
60
62
3
22
11
1.43
36805779--36805834
28
2.0
28
86
10
78
67
7
10
14
1.40
36805842--36805868
14
1.9
14
100
0
54
70
7
7
14
1.32
36806586--36806619
15
2.3
15
89
0
50
35
29
32
2
1.73
36813532--36813588
24
2.4
23
73
2
60
22
3
31
42
1.71
36813486--36813681
92
2.1
92
100
0
392
29
3
30
36
1.75
36813487--36813633
45
3.2
45
64
17
122
33
2
29
34
1.72
36813664--36813727
21
2.9
22
88
4
94
26
3
32
37
1.72
36819157--36819189
15
2.3
15
89
5
50
78
3
15
3
0.99
36819160--36819220
18
3.1
20
76
19
58
70
3
21
4
1.21
36819162--36819220
20
2.9
21
74
20
63
71
3
20
5
1.20
36827490--36827528
20
2.0
20
90
10
62
15
23
5
56
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36828984--36829069
42
2.0
43
86
2
120
25
17
23
33
1.96
36832486--36832550
22
2.9
22
83
2
76
35
32
3
29
1.73
36832854--36832914
18
3.4
17
80
12
68
77
3
8
11
1.11
36832891--36832916
13
2.0
13
100
0
52
76
0
7
15
0.99
36835349--36835400
23
2.3
22
75
21
54
9
23
1
65
1.32
36842810--36842874
22
2.9
22
86
2
85
35
33
3
27
1.73
36844953--36844999
21
2.2
22
84
3
60
14
25
2
57
1.49
36847194--36847233
16
2.4
16
95
4
71
10
10
0
80
0.92
36848022--36848046
13
1.9
13
100
0
50
16
32
16
36
1.90
36849022--36849065
22
2.0
22
90
0
70
36
4
34
25
1.76
36855701--36855749
21
2.2
22
85
7
64
6
20
2
71
1.18
36856658--36856714
30
1.9
30
85
0
78
10
15
7
66
1.42
36856678--36856725
15
3.6
14
76
23
50
6
16
6
70
1.28
36856675--36856714
15
2.7
15
77
14
55
7
15
10
67
1.41
36856707--36856772
11
5.4
12
74
15
55
15
7
4
72
1.23
36859607--36859648
15
2.5
17
88
11
61
59
0
9
30
1.29
36860957--36861160
92
2.2
92
87
1
302
28
17
21
31
1.96
36865962--36866024
33
1.9
33
84
12
85
12
25
6
55
1.60
36866022--36866077
21
2.7
21
72
5
51
8
17
1
71
1.21
36866021--36866146
28
4.6
26
68
20
78
8
18
3
69
1.27
36866021--36866077
14
4.1
14
75
16
57
8
17
1
71
1.19
36866084--36866134
18
2.9
18
82
2
68
5
15
5
72
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36866039--36866134
6
15.7
6
68
6
59
7
18
3
70
1.24
36867167--36867210
16
2.8
16
78
0
52
2
18
4
75
1.09
36867213--36867248
12
3.0
12
87
0
54
13
8
2
75
1.15
36867224--36867275
14
3.6
14
78
16
61
17
5
3
73
1.19
36876506--36876558
23
2.4
22
76
20
56
9
18
1
69
1.25
36880938--36881078
43
3.2
44
62
18
110
30
17
18
34
1.94
36880921--36881119
90
2.2
90
98
0
380
30
15
17
37
1.90
36886688--36886837
55
2.8
54
80
4
149
26
15
29
28
1.96
36886660--36886837
27
6.6
27
77
6
146
25
15
28
30
1.96
36886661--36886816
82
1.9
81
81
6
190
25
16
28
30
1.96
36894668--36894817
55
2.8
54
80
4
149
26
15
29
28
1.96
36894640--36894817
27
6.6
27
77
6
146
25
15
28
30
1.96
36894641--36894796
82
1.9
81
81
6
190
25
16
28
30
1.96
36912786--36912995
40
5.3
40
92
0
314
23
20
29
26
1.99
36919748--36919957
40
5.3
40
92
0
314
23
20
29
26
1.99
36924074--36924109
18
2.0
18
94
0
63
47
5
2
44
1.41
36924558--36924707
28
5.4
28
95
0
248
26
12
28
32
1.93
36927257--36927303
20
2.3
20
85
0
67
21
12
36
29
1.91
36928525--36928584
18
3.2
18
75
11
66
6
16
3
73
1.18
36929510--36929543
11
2.8
12
86
13
52
20
0
5
73
1.04
36929515--36929543
11
2.6
11
100
0
58
13
0
6
79
0.93
36930716--36930863
72
2.0
73
84
3
192
29
29
16
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36931050--36931081
16
2.0
16
100
0
64
50
25
12
12
1.75
36941793--36941823
14
2.2
14
100
0
62
38
19
6
35
1.77
36947666--36947729
22
2.9
22
80
0
83
29
29
6
34
1.82
36955492--36955526
15
2.3
15
100
0
70
37
14
28
20
1.91
36956010--36956053
17
2.6
16
86
10
61
75
4
11
9
1.19
36967393--36967417
5
5.0
5
100
0
50
20
0
0
80
0.72
36972978--36973061
25
3.2
25
73
12
78
27
8
15
48
1.73
36973910--36973985
32
2.5
30
81
12
84
31
1
2
64
1.15
36982261--36982320
22
2.6
22
84
5
66
10
5
8
76
1.14
36985191--36985277
45
1.9
45
95
0
156
29
10
29
29
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230