Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  175  of  230  ( 27491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52312883--52312942
3
20.0
3
80
0
66
60
3
5
31
1.35
52312873--52312933
21
2.9
20
81
13
70
57
1
4
36
1.30
52312875--52312937
9
6.7
9
81
13
56
58
1
4
34
1.29
52314575--52314857
92
3.1
95
71
11
298
31
19
15
33
1.93
52314483--52314869
181
2.1
181
88
0
560
31
19
16
33
1.94
52314653--52315007
137
2.6
137
87
1
525
30
19
17
32
1.95
52314338--52315187
318
2.7
315
86
2
1127
30
19
17
32
1.95
52314834--52315188
92
3.8
93
77
10
379
29
19
18
32
1.96
52314790--52315192
181
2.2
183
91
1
641
29
19
17
33
1.95
52319934--52319968
18
1.9
18
94
0
61
62
8
8
20
1.49
52327861--52327917
12
4.8
12
80
0
60
61
7
3
28
1.39
52329829--52329910
34
2.4
34
89
0
119
40
28
13
18
1.88
52336534--52336579
21
2.2
21
100
0
92
45
8
4
41
1.55
52336686--52336726
19
2.2
19
100
0
82
43
14
4
36
1.67
52356073--52356117
16
2.8
16
82
0
54
60
2
4
33
1.29
52356478--52356683
92
2.3
91
82
7
253
41
20
7
30
1.80
52356705--52356750
19
2.3
21
85
7
60
73
0
6
19
1.04
52356770--52356813
17
2.5
18
81
3
63
45
0
4
50
1.22
52356770--52356813
18
2.5
18
81
3
63
45
0
4
50
1.22
52357013--52357135
56
2.2
57
85
5
160
29
7
4
58
1.46
52357059--52357112
27
2.0
26
82
10
65
27
5
3
62
1.34
52357117--52357154
20
1.9
20
88
0
58
26
5
2
65
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52357250--52357440
89
2.1
90
86
6
280
32
10
20
35
1.88
52361473--52361528
27
2.1
27
100
0
112
37
3
30
28
1.74
52384483--52384794
40
7.8
40
92
0
498
23
27
20
29
1.98
52397755--52397991
50
4.7
50
87
2
305
27
22
29
21
1.99
52397758--52398030
50
5.5
50
85
3
192
28
21
28
21
1.99
52405504--52405604
51
2.0
51
94
0
175
24
15
25
33
1.95
52407776--52407803
12
2.3
12
100
0
56
28
42
21
7
1.79
52410162--52410227
30
2.2
30
88
0
96
18
18
37
25
1.93
52411235--52411273
20
2.0
20
89
0
60
43
20
25
10
1.83
52417833--52417939
53
2.0
53
100
0
214
28
16
13
41
1.86
52422870--52422940
20
3.6
19
77
7
61
32
16
35
15
1.91
52424128--52424973
423
2.0
424
93
0
1460
40
15
8
35
1.77
52425413--52425448
17
2.1
17
100
0
72
44
16
11
27
1.82
52425690--52425718
12
2.5
12
94
5
51
24
6
10
58
1.55
52434434--52434467
16
2.1
16
100
0
68
44
11
32
11
1.77
52440300--52440339
19
2.2
18
86
4
53
62
10
2
25
1.39
52450254--52450329
38
2.0
38
84
5
100
28
6
19
44
1.76
52450303--52450370
31
2.2
30
82
7
75
25
8
20
45
1.80
52457825--52457907
3
27.7
3
72
13
64
31
3
1
63
1.19
52457814--52457886
18
4.1
18
75
19
64
28
2
1
67
1.13
52461009--52461064
26
2.2
25
81
15
62
37
19
7
35
1.79
52469188--52469243
26
2.2
25
81
15
62
37
19
7
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52472359--52472391
5
6.6
5
92
0
57
78
3
0
18
0.87
52475810--52475872
22
2.7
23
80
11
58
14
7
4
73
1.23
52479924--52479960
18
2.1
18
100
0
74
45
21
0
32
1.52
52488256--52488315
15
4.4
15
76
21
53
18
26
28
26
1.98
52489721--52489753
17
1.9
17
88
11
50
42
9
0
48
1.35
52497844--52498061
80
2.7
82
79
8
207
34
20
21
23
1.96
52497856--52498061
27
7.7
27
78
8
170
34
19
21
23
1.96
52498101--52498182
24
3.5
24
80
5
78
20
6
25
47
1.73
52498296--52498349
26
2.1
26
89
0
81
16
20
25
37
1.93
52498356--52498566
32
6.6
33
74
11
152
20
20
22
35
1.96
52498421--52498560
64
2.2
65
84
6
187
19
20
23
37
1.94
52498578--52498624
22
2.1
22
84
0
58
21
14
14
48
1.80
52498636--52498687
26
2.0
26
84
0
68
21
25
21
32
1.98
52504264--52504466
106
1.9
106
98
0
397
36
4
14
43
1.67
52504760--52504797
20
1.9
20
100
0
76
50
13
21
15
1.78
52505421--52505471
24
2.1
24
85
7
68
50
0
29
19
1.48
52512930--52513021
20
4.2
20
67
22
69
56
2
0
41
1.11
52512930--52513066
68
2.0
67
97
2
258
54
2
0
43
1.15
52514428--52514528
49
2.1
49
86
3
141
30
26
14
27
1.95
52515308--52515530
33
6.4
33
71
23
161
32
28
19
19
1.96
52515331--52515561
102
2.3
102
94
3
403
31
29
19
19
1.97
52515576--52515774
51
4.0
51
78
9
230
30
29
17
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52515583--52515766
102
1.8
99
87
7
266
31
28
17
22
1.97
52540056--52540087
2
16.0
2
100
0
64
0
0
50
50
1.00
52543083--52543170
43
2.0
44
97
2
169
31
9
14
44
1.77
52543572--52543616
23
2.0
23
86
0
63
48
0
4
46
1.22
52543641--52543683
16
2.6
15
82
17
50
67
0
2
30
1.03
52545246--52545270
6
4.2
6
100
0
50
32
36
0
32
1.58
52547110--52547143
2
17.0
2
87
0
50
50
44
5
0
1.26
52547110--52547143
10
3.4
10
95
0
59
50
44
5
0
1.26
52551820--52551851
16
2.0
16
93
0
55
53
9
6
31
1.58
52552582--52552675
46
2.0
47
85
2
127
17
17
6
59
1.57
52552582--52552643
23
2.7
24
71
14
58
17
17
4
59
1.54
52552475--52552673
106
1.9
107
85
3
276
17
16
6
60
1.55
52552760--52552809
19
2.6
19
77
0
55
10
36
0
54
1.34
52562521--52562561
20
2.0
20
95
0
73
34
14
17
34
1.90
52564605--52564861
23
11.0
23
80
4
282
38
19
14
28
1.90
52564624--52564864
70
3.4
70
94
1
419
39
19
13
28
1.89
52567878--52567910
15
2.2
15
100
0
66
60
12
15
12
1.59
52568895--52568947
12
4.5
12
79
11
65
18
9
7
64
1.47
52568971--52569063
47
2.0
47
97
0
177
20
22
19
37
1.94
52577529--52577602
27
2.7
26
83
4
76
31
20
28
20
1.97
52580032--52580086
27
2.2
25
80
9
58
63
1
0
34
1.05
52580034--52580095
28
2.3
25
81
13
70
62
1
0
35
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52581704--52582229
263
2.0
263
99
0
1043
34
20
11
33
1.88
52582379--52582421
3
14.3
3
95
0
77
62
0
0
37
0.95
52594444--52594488
20
2.3
20
96
3
83
28
31
13
26
1.94
52595088--52595131
23
1.9
23
86
9
63
9
0
34
56
1.31
52595714--52595772
30
2.0
30
86
0
82
22
10
44
23
1.83
52615803--52615855
16
3.3
16
73
17
56
45
3
3
47
1.39
52618467--52618511
23
2.0
23
86
4
65
40
17
6
35
1.76
52618490--52618545
21
2.8
19
82
10
76
37
16
8
37
1.80
52618501--52618544
21
2.1
21
100
0
88
38
13
9
38
1.77
52618774--52619075
44
6.9
45
65
14
128
30
23
17
29
1.97
52618774--52619076
132
2.3
132
88
3
432
30
23
17
29
1.97
52619244--52619739
132
3.8
132
87
2
597
30
25
15
27
1.96
52619245--52619739
220
2.2
220
88
1
706
30
25
15
27
1.96
52619244--52619751
44
11.5
45
79
5
520
30
25
15
28
1.96
52620958--52620989
6
5.7
6
89
10
50
0
15
0
84
0.63
52620958--52620988
11
2.8
11
100
0
62
0
16
0
83
0.64
52626221--52626297
19
3.7
21
80
13
77
40
16
6
36
1.75
52626221--52626278
22
2.6
22
84
7
73
41
17
5
36
1.72
52626234--52626310
19
3.8
19
89
6
91
37
16
9
36
1.81
52633448--52633500
17
3.1
16
76
10
52
56
1
0
41
1.10
52634601--52634630
15
2.0
15
93
0
51
43
0
0
56
0.99
52634610--52634647
20
1.9
20
88
0
58
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52636185--52636320
63
2.1
64
83
4
168
17
48
6
27
1.72
52637728--52637791
27
2.4
27
84
5
78
39
28
15
17
1.90
52646684--52646748
22
3.0
22
81
0
85
32
16
15
35
1.91
52657082--52657122
21
2.0
20
85
4
55
26
4
14
53
1.61
52672025--52672053
13
2.1
14
93
6
51
13
0
20
65
1.26
52674790--52674834
21
2.1
22
84
12
58
66
8
11
13
1.44
52679838--52680030
32
5.8
32
90
3
251
39
17
25
18
1.91
52684985--52685177
32
5.8
32
90
3
251
39
17
25
18
1.91
52690924--52691020
32
2.9
32
87
4
131
17
24
17
40
1.91
52691678--52691733
20
2.7
21
81
13
53
69
7
12
10
1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230