genome.fa.s19.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D06
Parameters: 2 7 7 80 10 50 1000
Length:  68668488

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   

This is table  170  of  230  ( 27491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50549421--50549561	32	4.5	32	88	1	160	20	18	21	39	1.93
50553020--50553095	23	3.3	23	84	0	107	26	21	21	31	1.98
50555466--50555579	42	2.7	42	88	0	156	30	11	19	38	1.87
50555670--50555788	24	5.0	24	86	0	130	25	22	21	30	1.99
50563865--50564053	50	3.7	50	78	5	164	22	28	22	26	1.99
50576471--50576582	41	2.7	41	84	0	143	29	24	25	21	1.99
50584080--50584270	51	3.8	49	74	12	181	25	16	27	31	1.96
50584084--50584267	101	1.8	101	85	5	264	25	16	26	31	1.97
50615302--50615350	3	16.3	3	100	0	98	67	0	0	32	0.91
50615375--50615426	6	8.2	6	77	12	50	75	3	5	15	1.14
50616878--50617055	27	6.6	27	81	5	171	28	28	16	26	1.97
50616899--50617054	82	1.9	81	86	3	224	28	28	16	26	1.97
50624889--50625093	27	7.6	27	84	4	189	28	28	15	27	1.96
50624889--50625092	54	3.8	54	81	6	225	28	28	15	26	1.96
50624888--50625092	109	1.9	109	84	4	272	28	28	15	26	1.96
50628335--50628398	27	2.4	28	81	7	78	35	9	26	28	1.87
50628565--50628606	5	8.4	5	100	0	84	59	0	0	40	0.97
50628632--50628669	19	2.1	18	85	9	51	26	0	5	68	1.11
50629247--50629287	11	3.7	11	87	9	57	0	9	2	87	0.62
50629247--50629287	22	1.9	21	90	5	64	0	9	2	87	0.62
50630219--50630293	29	2.6	29	80	6	89	28	20	32	20	1.97
50630617--50630783	84	2.0	85	84	5	223	40	9	19	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50633983--50634149	59	2.8	58	85	3	217	52	8	5	33	1.56
50634512--50634547	18	2.0	18	94	0	63	41	5	27	25	1.77
50641238--50641274	8	4.8	8	96	3	67	0	24	0	75	0.80
50652358--50652390	17	2.0	17	94	5	59	48	0	0	51	1.00
50652347--50652428	19	4.2	20	73	21	77	41	0	1	57	1.06
50656894--50656918	13	1.9	13	100	0	50	56	12	0	32	1.36
50657741--50657793	21	2.5	21	90	6	81	30	35	9	24	1.87
50659804--50659870	13	5.1	13	81	3	89	29	7	25	37	1.83
50667042--50667241	41	4.9	41	82	6	217	30	21	27	21	1.98
50667429--50667490	31	2.0	31	96	0	115	27	9	27	35	1.88
50674746--50674945	41	4.9	41	83	3	224	28	21	29	20	1.98
50675133--50675194	31	2.0	31	93	0	106	27	8	27	37	1.85
50675139--50675215	31	2.4	31	84	4	91	28	10	27	33	1.90
50700538--50700686	25	6.0	25	74	12	126	22	14	26	36	1.92
50700558--50700676	50	2.4	50	88	0	184	22	15	25	36	1.93
50705438--50705473	18	2.1	18	89	5	56	44	22	0	33	1.53
50706197--50706369	85	2.0	84	98	1	337	29	15	14	41	1.86
50707301--50707346	22	2.1	22	100	0	92	36	13	4	45	1.63
50708004--50708042	19	2.1	19	95	0	69	20	7	15	56	1.63
50714907--50714958	22	2.4	22	83	0	68	15	15	17	51	1.76
50716693--50716740	25	1.9	25	82	0	60	35	18	22	22	1.96
50716782--50716830	24	2.0	25	84	4	64	30	22	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50720390--50720415	3	8.7	3	100	0	52	30	0	0	69	0.89
50721565--50721610	18	2.6	18	86	6	67	39	0	4	56	1.19
50721710--50721793	27	3.0	26	73	10	69	33	1	2	63	1.15
50724181--50724233	25	2.1	25	82	0	61	30	11	15	43	1.81
50734546--50734587	20	2.1	20	90	0	66	23	21	23	30	1.99
50754722--50754762	20	2.0	21	90	4	66	46	21	0	31	1.52
50757123--50757193	27	2.6	27	82	12	92	40	23	14	21	1.89
50757455--50757526	33	2.2	33	82	5	83	26	26	22	25	2.00
50760338--50760383	15	3.1	15	79	17	51	80	0	2	17	0.81
50765429--50765474	23	2.0	23	87	8	67	23	6	2	67	1.25
50765424--50765482	23	2.8	20	75	22	50	28	6	1	62	1.30
50779715--50779777	28	2.3	28	81	15	78	61	3	1	33	1.21
50782811--50782851	21	2.0	21	90	0	64	70	4	0	24	1.06
50792489--50792541	21	2.5	21	81	9	63	30	30	1	37	1.68
50792506--50792560	21	2.7	21	78	15	62	36	32	0	30	1.58
50800692--50800727	15	2.4	15	90	0	54	38	13	0	47	1.44
50800735--50800770	3	12.0	3	100	0	72	33	0	0	66	0.92
50801197--50801243	18	2.7	18	86	3	60	48	4	6	40	1.48
50803188--50803332	67	2.2	67	84	0	200	37	16	23	22	1.94
50809133--50809175	10	4.1	10	82	11	50	58	6	0	34	1.25
50821946--50821988	20	2.2	20	82	0	50	41	0	23	34	1.55
50825177--50825254	20	3.9	20	82	0	93	11	28	17	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50832433--50832478	20	2.2	20	81	11	58	28	28	23	19	1.98
50843603--50843781	51	3.5	50	76	6	175	24	17	27	30	1.97
50847891--50847984	49	1.9	49	93	0	161	23	19	25	31	1.98
50848979--50849056	20	3.9	19	73	6	66	37	11	5	46	1.62
50849477--50849520	22	2.0	23	86	4	63	72	11	2	13	1.21
50863892--50863917	3	8.7	3	100	0	52	69	0	30	0	0.89
50869176--50869222	20	2.4	20	85	3	69	61	6	0	31	1.21
50869767--50869846	30	2.6	29	81	13	90	25	7	5	62	1.42
50869968--50870085	62	1.9	61	86	8	168	43	13	11	31	1.80
50870371--50870404	13	2.5	13	90	4	50	50	0	2	47	1.16
50874379--50874550	43	4.0	43	72	8	134	30	25	18	25	1.98
50878288--50878493	102	2.0	102	96	0	376	46	14	17	21	1.84
50882403--50882433	16	1.9	16	93	0	53	32	12	12	41	1.81
50897036--50897327	91	3.2	91	68	7	266	27	9	21	42	1.83
50897169--50897239	31	2.3	31	78	9	81	23	11	19	45	1.83
50896930--50897440	184	2.8	182	90	2	749	27	8	21	42	1.81
50897408--50897485	31	2.5	31	76	10	81	28	8	19	43	1.81
50898867--50898942	29	2.6	29	87	0	107	26	28	22	22	1.99
50898864--50898970	29	3.7	29	82	0	88	27	28	21	23	1.99
50899217--50899268	24	2.2	24	100	0	104	28	17	21	32	1.96
50901248--50901304	23	2.6	22	76	13	64	42	1	0	56	1.10
50901579--50901642	20	3.1	20	81	4	65	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50901654--50901691	16	2.4	16	86	4	51	34	0	7	57	1.28
50901661--50901716	28	2.0	28	89	6	87	30	0	8	60	1.27
50902001--50902076	31	2.5	31	78	6	75	31	1	15	51	1.52
50904015--50904088	31	2.3	31	79	9	78	17	45	12	24	1.82
50904037--50904097	31	1.9	32	87	9	90	14	45	16	22	1.84
50904279--50904509	76	3.1	76	90	6	355	29	9	7	54	1.59
50904313--50904548	76	3.1	75	85	6	203	31	8	7	52	1.59
50918651--50918691	21	2.0	21	85	0	55	43	34	0	21	1.53
50918700--50918752	21	2.4	23	79	17	60	30	49	1	18	1.59
50919352--50919626	41	6.7	42	79	7	246	29	26	22	21	1.99
50919372--50919626	123	2.1	123	84	2	325	29	26	22	21	1.99
50919946--50919994	18	2.8	18	87	3	64	46	4	6	42	1.47
50922107--50922132	11	2.4	11	100	0	52	38	7	0	53	1.30
50922130--50922173	9	5.0	9	78	15	56	27	0	0	72	0.85
50922129--50922174	10	5.0	10	80	20	55	28	0	0	71	0.86
50922132--50922168	16	2.2	17	90	4	58	27	0	0	72	0.84
50922107--50922245	50	2.7	52	75	10	144	35	1	0	63	1.04
50922148--50922223	12	7.4	11	78	19	67	39	0	0	60	0.97
50922180--50922214	17	2.0	18	94	5	63	42	0	0	57	0.99
50924235--50924273	21	1.9	20	84	5	51	43	0	5	51	1.24
50926631--50927195	297	1.9	293	79	6	631	39	9	13	37	1.77
50927990--50928054	21	3.1	21	75	18	73	24	1	32	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50929165--50929223	30	2.0	30	86	0	82	15	28	28	27	1.96
50932717--50932757	17	2.4	17	87	4	55	78	7	0	14	0.96
50932730--50932755	11	2.4	11	100	0	52	84	7	0	7	0.77
50936093--50936451	151	2.3	152	85	7	469	43	8	5	43	1.56
50937194--50937272	39	2.0	39	92	0	131	39	29	15	16	1.89
50937198--50937573	42	9.1	42	87	1	492	35	23	18	22	1.96
50937211--50937573	125	2.9	125	87	2	500	34	24	18	22	1.96
50937249--50937573	167	1.9	167	93	1	553	33	23	19	23	1.97
50937988--50938020	8	4.2	8	84	7	50	0	12	0	87	0.53
50937988--50938019	15	2.2	14	94	5	55	0	12	0	87	0.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230